Csa7G447840 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa7G447840
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr7 : 18062009 .. 18062398 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTAATTCTGGCCGACGGTTATGCTATTTCTGGAAGAGCGATGAAATTGGGGGAATGAGTAGTAGAAAAAAAAGGAGCGATCACATACCAAATTTAGGAAACAATAGAGAAGCGAAACGGTGGGACTGGTGCTTGAAACTGAATAATGCACGTAACTGCGTAAGGCAATGGCAGCCAAATTGGTGTGGTGGCCGTGTATCTGAGACTGCGAGATGACCACTCCATTGATCTTCAAAAGGAAGGTCTAGAGAAAAAGGCAAAGCAGAAAATCGGCATGAAAATGGAGATCCATTGGAGCTCCGAGCTGGATGAGCACGAAACTGATCTGTACACTGTCCTCAGTGTTATCGTTCCTCTTCCAATGCGAAATTTCGAAGAAACTTCCTAA

mRNA sequence

ATGTTAATTCTGGCCGACGGCAATGGCAGCCAAATTGGTGTGGTGGCCGTGTATCTGAGACTGCGAGATGACCACTCCATTGATCTTCAAAAGGAAGGTCTAGAGAAAAAGGCAAAGCAGAAAATCGGCATGAAAATGGAGATCCATTGGAGCTCCGAGCTGGATGAGCACGAAACTGATCTGTACACTGTCCTCAGTGTTATCGTTCCTCTTCCAATGCGAAATTTCGAAGAAACTTCCTAA

Coding sequence (CDS)

ATGTTAATTCTGGCCGACGGCAATGGCAGCCAAATTGGTGTGGTGGCCGTGTATCTGAGACTGCGAGATGACCACTCCATTGATCTTCAAAAGGAAGGTCTAGAGAAAAAGGCAAAGCAGAAAATCGGCATGAAAATGGAGATCCATTGGAGCTCCGAGCTGGATGAGCACGAAACTGATCTGTACACTGTCCTCAGTGTTATCGTTCCTCTTCCAATGCGAAATTTCGAAGAAACTTCCTAA

Protein sequence

MLILADGNGSQIGVVAVYLRLRDDHSIDLQKEGLEKKAKQKIGMKMEIHWSSELDEHETDLYTVLSVIVPLPMRNFEETS*
Homology
[Close]
BLAST of Csa7G447840 vs. TrEMBL
Match: A0A0A0KAK9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G447840 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 6.1e-37
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 1 

Query: 1  MLILADGNGSQIGVVAVYLRLRDDHSIDLQKEGLEKKAKQKIGMKMEIHWSSELDEHETD 60
          MLILADGNGSQIGVVAVYLRLRDDHSIDLQKEGLEKKAKQKIGMKMEIHWSSELDEHETD
Sbjct: 1  MLILADGNGSQIGVVAVYLRLRDDHSIDLQKEGLEKKAKQKIGMKMEIHWSSELDEHETD 60

Query: 61 LYTVLSVIVPLPMRNFEETS 81
          LYTVLSVIVPLPMRNFEETS
Sbjct: 61 LYTVLSVIVPLPMRNFEETS 80

[Close]
BLAST of Csa7G447840 vs. NCBI nr
Match: gi|700190189|gb|KGN45422.1| (hypothetical protein Csa_7G447840 [Cucumis sativus])

HSP 1 Score: 161.0 bits (406), Expect = 8.7e-37
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 1 

Query: 1  MLILADGNGSQIGVVAVYLRLRDDHSIDLQKEGLEKKAKQKIGMKMEIHWSSELDEHETD 60
          MLILADGNGSQIGVVAVYLRLRDDHSIDLQKEGLEKKAKQKIGMKMEIHWSSELDEHETD
Sbjct: 1  MLILADGNGSQIGVVAVYLRLRDDHSIDLQKEGLEKKAKQKIGMKMEIHWSSELDEHETD 60

Query: 61 LYTVLSVIVPLPMRNFEETS 81
          LYTVLSVIVPLPMRNFEETS
Sbjct: 61 LYTVLSVIVPLPMRNFEETS 80

The following BLAST results are available for this feature:
BLAST of Csa7G447840 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KAK9_CUCSA6.1e-37100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_7G447840 PE=4 SV=1[more]
BLAST of Csa7G447840 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700190189|gb|KGN45422.1|8.7e-37100.00hypothetical protein Csa_7G447840 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU138221cucumber EST collection version 3.0transcribed_cluster
CU144029cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa7G447840.1Csa7G447840.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU138221CU138221transcribed_cluster
CU144029CU144029transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa7G447840Watermelon (97103) v2cuwmbB570
Csa7G447840Wax gourdcuwgoB690
Csa7G447840Cucumber (Gy14) v1cgycuB508
Csa7G447840Cucurbita maxima (Rimu)cmacuB383
Csa7G447840Cucurbita maxima (Rimu)cmacuB919
Csa7G447840Cucurbita moschata (Rifu)cmocuB373
Csa7G447840Cucurbita moschata (Rifu)cmocuB905
Csa7G447840Melon (DHL92) v3.5.1cumeB521
Csa7G447840Watermelon (Charleston Gray)cuwcgB524
Csa7G447840Watermelon (97103) v1cuwmB566
Csa7G447840Cucurbita pepo (Zucchini)cpecuB156
Csa7G447840Cucurbita pepo (Zucchini)cpecuB336
Csa7G447840Bottle gourd (USVL1VR-Ls)culsiB503
Csa7G447840Cucumber (Gy14) v2cgybcuB323
Csa7G447840Melon (DHL92) v3.6.1cumedB501
Csa7G447840Silver-seed gourdcarcuB0632
Csa7G447840Silver-seed gourdcarcuB0787