Csa7G342760 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa7G342760
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Translin, putative; contains IPR016068 (Translin, N-terminal)
Location	Chr7 : 12382663 .. 12383154 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAAGGGCATGTTTGGTCCGTGGGATGGAGTGTGCTATTATATCTCACTTTCAAGTCTGGCCCACCAATTAACATAAATGGGGATAAAGTTTATTATAACCCCCGAGTGTTCACTACTCGCTCTCACTCCTTCCCTCTCCCTTACTTCTCTAAATCCCTCCCTCACTCATCTAGTTCTATGCTTGCATTGCTTCCTCGTCTTCTACTGTGTATCAACCTTCAAGAAGAACCTTATCATTCGACCTTTACTTATTTATCTTGTTCCTCTTCCAACATGGCTAGCACTGACGCAGATGCTCTTGCCTCATCTTTTTCGGTAGAGAAACAATTTGAGCATTTCAGAGCTCAACTTCAAGATTCTGGGAGCTTATGTGACTGCATTCGAAGTGTGGCTATGGAGATCGAGTCATCCACGAGGTTGATGCACGCTAGCTTGCTTTTGATTCATCATTCTCGTCTCACTCGTGGAATTGAATTTTTATTTGCATGA

mRNA sequence

ATGCAAGGGCATGTTTGGTCCGTGGGATGGAGTGTGCTATTATATCTCACTTTCAAGTCTGGCCCACCAATTAACATAAATGGGGATAAAGTTTATTATAACCCCCGAGTGTTCACTACTCGCTCTCACTCCTTCCCTCTCCCTTACTTCTCTAAATCCCTCCCTCACTCATCTAGTTCTATGCTTGCATTGCTTCCTCGTCTTCTACTGTGTATCAACCTTCAAGAAGAACCTTATCATTCGACCTTTACTTATTTATCTTGTTCCTCTTCCAACATGGCTAGCACTGACGCAGATGCTCTTGCCTCATCTTTTTCGGTAGAGAAACAATTTGAGCATTTCAGAGCTCAACTTCAAGATTCTGGGAGCTTATGTGACTGCATTCGAAGTGTGGCTATGGAGATCGAGTCATCCACGAGGTTGATGCACGCTAGCTTGCTTTTGATTCATCATTCTCGTCTCACTCGTGGAATTGAATTTTTATTTGCATGA

Coding sequence (CDS)

ATGCAAGGGCATGTTTGGTCCGTGGGATGGAGTGTGCTATTATATCTCACTTTCAAGTCTGGCCCACCAATTAACATAAATGGGGATAAAGTTTATTATAACCCCCGAGTGTTCACTACTCGCTCTCACTCCTTCCCTCTCCCTTACTTCTCTAAATCCCTCCCTCACTCATCTAGTTCTATGCTTGCATTGCTTCCTCGTCTTCTACTGTGTATCAACCTTCAAGAAGAACCTTATCATTCGACCTTTACTTATTTATCTTGTTCCTCTTCCAACATGGCTAGCACTGACGCAGATGCTCTTGCCTCATCTTTTTCGGTAGAGAAACAATTTGAGCATTTCAGAGCTCAACTTCAAGATTCTGGGAGCTTATGTGACTGCATTCGAAGTGTGGCTATGGAGATCGAGTCATCCACGAGGTTGATGCACGCTAGCTTGCTTTTGATTCATCATTCTCGTCTCACTCGTGGAATTGAATTTTTATTTGCATGA

Protein sequence

MQGHVWSVGWSVLLYLTFKSGPPININGDKVYYNPRVFTTRSHSFPLPYFSKSLPHSSSSMLALLPRLLLCINLQEEPYHSTFTYLSCSSSNMASTDADALASSFSVEKQFEHFRAQLQDSGSLCDCIRSVAMEIESSTRLMHASLLLIHHSRLTRGIEFLFA*

Homology

[Close]

BLAST of Csa7G342760 vs. TrEMBL
Match: A0A0A0K567_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G342760 PE=4 SV=1)

HSP 1 Score: 331.6 bits (849), Expect = 5.3e-88
Identity = 163/163 (100.00%), Postives = 163/163 (100.00%), Query Frame = 1


Query: 1   MQGHVWSVGWSVLLYLTFKSGPPININGDKVYYNPRVFTTRSHSFPLPYFSKSLPHSSSS 60
           MQGHVWSVGWSVLLYLTFKSGPPININGDKVYYNPRVFTTRSHSFPLPYFSKSLPHSSSS
Sbjct: 1   MQGHVWSVGWSVLLYLTFKSGPPININGDKVYYNPRVFTTRSHSFPLPYFSKSLPHSSSS 60

Query: 61  MLALLPRLLLCINLQEEPYHSTFTYLSCSSSNMASTDADALASSFSVEKQFEHFRAQLQD 120
           MLALLPRLLLCINLQEEPYHSTFTYLSCSSSNMASTDADALASSFSVEKQFEHFRAQLQD
Sbjct: 61  MLALLPRLLLCINLQEEPYHSTFTYLSCSSSNMASTDADALASSFSVEKQFEHFRAQLQD 120

Query: 121 SGSLCDCIRSVAMEIESSTRLMHASLLLIHHSRLTRGIEFLFA 164
           SGSLCDCIRSVAMEIESSTRLMHASLLLIHHSRLTRGIEFLFA
Sbjct: 121 SGSLCDCIRSVAMEIESSTRLMHASLLLIHHSRLTRGIEFLFA 163

[Close]

BLAST of Csa7G342760 vs. TrEMBL
Match: A0A0A0LE08_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G740110 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 6.3e-25
Identity = 72/112 (64.29%), Postives = 81/112 (72.32%), Query Frame = 1


Query: 44  SFPLPYFSKSLPHSSSSMLALLPRLLLCINLQEEPYHSTFTYLSCSSSNMASTDADALAS 103
           +FPL +   SLP  S S      RL L ++ QE+P  S  T   CSSS MA TDA++LAS
Sbjct: 24  AFPLIFCLHSLPFISVS------RLPLRVSRQEQPSRSVRTSTFCSSSTMAGTDANSLAS 83

Query: 104 SFSVEKQFEHFRAQLQDSGSLCDCIRSVAMEIESSTRLMHASLLLIHHSRLT 156
           S SVEKQFEHFR QLQDSGSL D IRSVAMEIESSTRL+ ASLLL+H SRLT
Sbjct: 84  SSSVEKQFEHFRTQLQDSGSLRDRIRSVAMEIESSTRLIQASLLLVHQSRLT 129

[Close]

BLAST of Csa7G342760 vs. TrEMBL
Match: A0A061ESQ4_THECC (Translin family protein isoform 2 OS=Theobroma cacao GN=TCM_022191 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.9e-13
Identity = 46/76 (60.53%), Postives = 58/76 (76.32%), Query Frame = 1


Query: 78  PYHSTFTYLSCSSSNMASTDADALASSFSVEKQFEHFRAQLQDSGSLCDCIRSVAMEIES 137
           P+ S  T   CS+S MAS D+DA  +S S+EKQFE FR QL+DSGSL + IR+V +EIES
Sbjct: 46  PFRSPVTATLCSTS-MASGDSDAPQTSPSLEKQFEKFRVQLEDSGSLRERIRAVVLEIES 105

Query: 138 STRLMHASLLLIHHSR 154
           +TRLM ASLLL+H S+
Sbjct: 106 ATRLMQASLLLVHQSK 120

[Close]

BLAST of Csa7G342760 vs. TrEMBL
Match: A0A061ES44_THECC (Translin family protein isoform 1 OS=Theobroma cacao GN=TCM_022191 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.9e-13
Identity = 46/76 (60.53%), Postives = 58/76 (76.32%), Query Frame = 1


Query: 78  PYHSTFTYLSCSSSNMASTDADALASSFSVEKQFEHFRAQLQDSGSLCDCIRSVAMEIES 137
           P+ S  T   CS+S MAS D+DA  +S S+EKQFE FR QL+DSGSL + IR+V +EIES
Sbjct: 46  PFRSPVTATLCSTS-MASGDSDAPQTSPSLEKQFEKFRVQLEDSGSLRERIRAVVLEIES 105

Query: 138 STRLMHASLLLIHHSR 154
           +TRLM ASLLL+H S+
Sbjct: 106 ATRLMQASLLLVHQSK 120

[Close]

BLAST of Csa7G342760 vs. TrEMBL
Match: F6HR38_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0040g01630 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 3.1e-11
Identity = 44/99 (44.44%), Postives = 63/99 (63.64%), Query Frame = 1


Query: 55  PHSSSSMLALLPRLLLCINLQEEPYHSTFTYLSCSSSNMASTDADALASSFSVEKQFEHF 114
           PHSS  +  L     + +     P+ +    L  ++S+ +S   D  +SS  VEKQFE F
Sbjct: 20  PHSSIFLPTLRTFSSIILPPSPFPFRNNAFRLLSATSHSSSMAEDGTSSS--VEKQFESF 79

Query: 115 RAQLQDSGSLCDCIRSVAMEIESSTRLMHASLLLIHHSR 154
           R QL++SG L + +R++AMEIES+TRLMHA+LLL+H SR
Sbjct: 80  RCQLEESGGLRERVRAIAMEIESATRLMHANLLLVHQSR 116

[Close]

BLAST of Csa7G342760 vs. TAIR10
Match: AT2G37020.2 (AT2G37020.2 Translin family protein)

HSP 1 Score: 65.1 bits (157), Expect = 4.7e-11
Identity = 39/78 (50.00%), Postives = 50/78 (64.10%), Query Frame = 1


Query: 81  STFTYLSCSSSN-----MASTDADALASSFSVEKQFEHFRAQLQDSGSLCDCIRSVAMEI 140
           S+F + S SS +     MA  D      S S+EKQFE FR QL++S +L + IR+V MEI
Sbjct: 55  SSFPFCSTSSFSSFYIPMAGGDGQV---SHSLEKQFESFRVQLEESAALREQIRAVVMEI 114

Query: 141 ESSTRLMHASLLLIHHSR 154
           ES+TRL+ A+LLL+H SR
Sbjct: 115 ESATRLIQANLLLVHQSR 129

[Close]

BLAST of Csa7G342760 vs. NCBI nr
Match: gi|700189375|gb|KGN44608.1| (hypothetical protein Csa_7G342760 [Cucumis sativus])

HSP 1 Score: 331.6 bits (849), Expect = 7.6e-88
Identity = 163/163 (100.00%), Postives = 163/163 (100.00%), Query Frame = 1


Query: 1   MQGHVWSVGWSVLLYLTFKSGPPININGDKVYYNPRVFTTRSHSFPLPYFSKSLPHSSSS 60
           MQGHVWSVGWSVLLYLTFKSGPPININGDKVYYNPRVFTTRSHSFPLPYFSKSLPHSSSS
Sbjct: 1   MQGHVWSVGWSVLLYLTFKSGPPININGDKVYYNPRVFTTRSHSFPLPYFSKSLPHSSSS 60

Query: 61  MLALLPRLLLCINLQEEPYHSTFTYLSCSSSNMASTDADALASSFSVEKQFEHFRAQLQD 120
           MLALLPRLLLCINLQEEPYHSTFTYLSCSSSNMASTDADALASSFSVEKQFEHFRAQLQD
Sbjct: 61  MLALLPRLLLCINLQEEPYHSTFTYLSCSSSNMASTDADALASSFSVEKQFEHFRAQLQD 120

Query: 121 SGSLCDCIRSVAMEIESSTRLMHASLLLIHHSRLTRGIEFLFA 164
           SGSLCDCIRSVAMEIESSTRLMHASLLLIHHSRLTRGIEFLFA
Sbjct: 121 SGSLCDCIRSVAMEIESSTRLMHASLLLIHHSRLTRGIEFLFA 163

[Close]

BLAST of Csa7G342760 vs. NCBI nr
Match: gi|449440117|ref|XP_004137831.1| (PREDICTED: translin [Cucumis sativus])

HSP 1 Score: 122.1 bits (305), Expect = 9.1e-25
Identity = 72/112 (64.29%), Postives = 81/112 (72.32%), Query Frame = 1


Query: 44  SFPLPYFSKSLPHSSSSMLALLPRLLLCINLQEEPYHSTFTYLSCSSSNMASTDADALAS 103
           +FPL +   SLP  S S      RL L ++ QE+P  S  T   CSSS MA TDA++LAS
Sbjct: 24  AFPLIFCLHSLPFISVS------RLPLRVSRQEQPSRSVRTSTFCSSSTMAGTDANSLAS 83

Query: 104 SFSVEKQFEHFRAQLQDSGSLCDCIRSVAMEIESSTRLMHASLLLIHHSRLT 156
           S SVEKQFEHFR QLQDSGSL D IRSVAMEIESSTRL+ ASLLL+H SRLT
Sbjct: 84  SSSVEKQFEHFRTQLQDSGSLRDRIRSVAMEIESSTRLIQASLLLVHQSRLT 129

[Close]

BLAST of Csa7G342760 vs. NCBI nr
Match: gi|659084066|ref|XP_008442689.1| (PREDICTED: translin [Cucumis melo])

HSP 1 Score: 107.1 bits (266), Expect = 3.0e-20
Identity = 61/79 (77.22%), Postives = 64/79 (81.01%), Query Frame = 1


Query: 79  YHSTFTYLSCSSSNMAST--DADALASSFSVEKQFEHFRAQLQDSGSLCDCIRSVAMEIE 138
           + ST T   CSSS MA T  D DALASS SVEKQFEHFRAQLQDSGSL D IRSVAMEIE
Sbjct: 49  HRSTRTSSFCSSSTMAGTNADTDALASSSSVEKQFEHFRAQLQDSGSLRDRIRSVAMEIE 108

Query: 139 SSTRLMHASLLLIHHSRLT 156
           SSTRL+ ASLLL+H SRLT
Sbjct: 109 SSTRLIQASLLLVHQSRLT 127

[Close]

BLAST of Csa7G342760 vs. NCBI nr
Match: gi|590630758|ref|XP_007027368.1| (Translin family protein isoform 1 [Theobroma cacao])

HSP 1 Score: 84.0 bits (206), Expect = 2.7e-13
Identity = 46/76 (60.53%), Postives = 58/76 (76.32%), Query Frame = 1


Query: 78  PYHSTFTYLSCSSSNMASTDADALASSFSVEKQFEHFRAQLQDSGSLCDCIRSVAMEIES 137
           P+ S  T   CS+S MAS D+DA  +S S+EKQFE FR QL+DSGSL + IR+V +EIES
Sbjct: 46  PFRSPVTATLCSTS-MASGDSDAPQTSPSLEKQFEKFRVQLEDSGSLRERIRAVVLEIES 105

Query: 138 STRLMHASLLLIHHSR 154
           +TRLM ASLLL+H S+
Sbjct: 106 ATRLMQASLLLVHQSK 120

[Close]

BLAST of Csa7G342760 vs. NCBI nr
Match: gi|590630761|ref|XP_007027369.1| (Translin family protein isoform 2 [Theobroma cacao])

HSP 1 Score: 84.0 bits (206), Expect = 2.7e-13
Identity = 46/76 (60.53%), Postives = 58/76 (76.32%), Query Frame = 1


Query: 78  PYHSTFTYLSCSSSNMASTDADALASSFSVEKQFEHFRAQLQDSGSLCDCIRSVAMEIES 137
           P+ S  T   CS+S MAS D+DA  +S S+EKQFE FR QL+DSGSL + IR+V +EIES
Sbjct: 46  PFRSPVTATLCSTS-MASGDSDAPQTSPSLEKQFEKFRVQLEDSGSLRERIRAVVLEIES 105

Query: 138 STRLMHASLLLIHHSR 154
           +TRLM ASLLL+H S+
Sbjct: 106 ATRLMQASLLLVHQSK 120

The following BLAST results are available for this feature:

BLAST of Csa7G342760 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K567_CUCSA	5.3e-88	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G342760 PE=4 SV=1	[more]
A0A0A0LE08_CUCSA	6.3e-25	64.29	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G740110 PE=4 SV=1	[more]
A0A061ESQ4_THECC	1.9e-13	60.53	Translin family protein isoform 2 OS=Theobroma cacao GN=TCM_022191 PE=4 SV=1	[more]
A0A061ES44_THECC	1.9e-13	60.53	Translin family protein isoform 1 OS=Theobroma cacao GN=TCM_022191 PE=4 SV=1	[more]
F6HR38_VITVI	3.1e-11	44.44	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0040g01630 PE=4 SV=...	[more]

BLAST of Csa7G342760 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G37020.2	4.7e-11	50.00	Translin family protein	[more]

BLAST of Csa7G342760 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700189375\|gb\|KGN44608.1\|	7.6e-88	100.00	hypothetical protein Csa_7G342760 [Cucumis sativus]	[more]
gi\|449440117\|ref\|XP_004137831.1\|	9.1e-25	64.29	PREDICTED: translin [Cucumis sativus]	[more]
gi\|659084066\|ref\|XP_008442689.1\|	3.0e-20	77.22	PREDICTED: translin [Cucumis melo]	[more]
gi\|590630758\|ref\|XP_007027368.1\|	2.7e-13	60.53	Translin family protein isoform 1 [Theobroma cacao]	[more]
gi\|590630761\|ref\|XP_007027369.1\|	2.7e-13	60.53	Translin family protein isoform 2 [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002848	Translin_fam
IPR016068	Translin_N

Vocabulary: **Molecular Function**
Term	Definition
GO:0043565	sequence-specific DNA binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0043565	sequence-specific DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa7G342760.1	Csa7G342760.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002848	Translin	PANTHER	PTHR10741	TRANSLIN AND TRANSLIN ASSOCIATED PROTEIN X	coord: 52..150 score: 1.9
IPR016068	Translin, N-terminal	GENE3D	G3DSA:1.20.58.190		coord: 98..153 score: 1.
None	No IPR available	PANTHER	PTHR10741:SF2	TRANSLIN	coord: 52..150 score: 1.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa7G342760	CSPI07G14340	Wild cucumber (PI 183967)	cpicuB354

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa7G342760	Cucurbita maxima (Rimu)	cmacuB384
Csa7G342760	Cucurbita maxima (Rimu)	cmacuB531
Csa7G342760	Cucurbita maxima (Rimu)	cmacuB647
Csa7G342760	Cucurbita maxima (Rimu)	cmacuB914
Csa7G342760	Cucurbita moschata (Rifu)	cmocuB374
Csa7G342760	Cucurbita moschata (Rifu)	cmocuB522
Csa7G342760	Cucurbita moschata (Rifu)	cmocuB900
Csa7G342760	Melon (DHL92) v3.5.1	cumeB523
Csa7G342760	Watermelon (Charleston Gray)	cuwcgB525
Csa7G342760	Watermelon (Charleston Gray)	cuwcgB565
Csa7G342760	Watermelon (97103) v1	cuwmB567
Csa7G342760	Watermelon (97103) v1	cuwmB587
Csa7G342760	Cucurbita pepo (Zucchini)	cpecuB157
Csa7G342760	Cucurbita pepo (Zucchini)	cpecuB337
Csa7G342760	Cucurbita pepo (Zucchini)	cpecuB769
Csa7G342760	Bottle gourd (USVL1VR-Ls)	culsiB503
Csa7G342760	Bottle gourd (USVL1VR-Ls)	culsiB526
Csa7G342760	Cucumber (Gy14) v2	cgybcuB152
Csa7G342760	Cucumber (Gy14) v2	cgybcuB323
Csa7G342760	Melon (DHL92) v3.6.1	cumedB502
Csa7G342760	Silver-seed gourd	carcuB0095
Csa7G342760	Watermelon (97103) v2	cuwmbB550
Csa7G342760	Watermelon (97103) v2	cuwmbB571
Csa7G342760	Wax gourd	cuwgoB705
Csa7G342760	Cucumber (Chinese Long) v2	cucuB132
Csa7G342760	Cucumber (Gy14) v1	cgycuB076