CSPI07G14340 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI07G14340
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionTranslin
LocationChr7 : 12881077 .. 12881388 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTGCATTGCTTCCTCGTCTTCTACTGTGTATCAACCTTCAAGAAGAACCTTATCATTCGACCTTTACTTATTTATCTTGTTCCTCTTCCAACATGGCTAGCACTGACGTAGATGCTCTTGCCTCATCTTTTTCGGTGGAGAAACAATTTGAGCATTTCAGAGCTCAACTTCAAGATTCTGGGAGCTTATGTGACCGCATTCGAAGTGTGGCTATGGAGATCGAGTCATCCACGAGGTTGATGCACGCTAGCTTGCTTTTGATTCATCATTCTCGTCTCACTCCTGGAATTGAATTTTTATTTGCATGA

mRNA sequence

ATGCTTGCATTGCTTCCTCGTCTTCTACTGTGTATCAACCTTCAAGAAGAACCTTATCATTCGACCTTTACTTATTTATCTTGTTCCTCTTCCAACATGGCTAGCACTGACGTAGATGCTCTTGCCTCATCTTTTTCGGTGGAGAAACAATTTGAGCATTTCAGAGCTCAACTTCAAGATTCTGGGAGCTTATGTGACCGCATTCGAAGTGTGGCTATGGAGATCGAGTCATCCACGAGGTTGATGCACGCTAGCTTGCTTTTGATTCATCATTCTCGTCTCACTCCTGGAATTGAATTTTTATTTGCATGA

Coding sequence (CDS)

ATGCTTGCATTGCTTCCTCGTCTTCTACTGTGTATCAACCTTCAAGAAGAACCTTATCATTCGACCTTTACTTATTTATCTTGTTCCTCTTCCAACATGGCTAGCACTGACGTAGATGCTCTTGCCTCATCTTTTTCGGTGGAGAAACAATTTGAGCATTTCAGAGCTCAACTTCAAGATTCTGGGAGCTTATGTGACCGCATTCGAAGTGTGGCTATGGAGATCGAGTCATCCACGAGGTTGATGCACGCTAGCTTGCTTTTGATTCATCATTCTCGTCTCACTCCTGGAATTGAATTTTTATTTGCATGA
Homology
[Close]
BLAST of CSPI07G14340 vs. TrEMBL
Match: A0A0A0K567_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G342760 PE=4 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 7.0e-46
Identity = 100/103 (97.09%), Postives = 100/103 (97.09%), Query Frame = 1 

Query: 1   MLALLPRLLLCINLQEEPYHSTFTYLSCSSSNMASTDVDALASSFSVEKQFEHFRAQLQD 60
           MLALLPRLLLCINLQEEPYHSTFTYLSCSSSNMASTD DALASSFSVEKQFEHFRAQLQD
Sbjct: 61  MLALLPRLLLCINLQEEPYHSTFTYLSCSSSNMASTDADALASSFSVEKQFEHFRAQLQD 120

Query: 61  SGSLCDRIRSVAMEIESSTRLMHASLLLIHHSRLTPGIEFLFA 104
           SGSLCD IRSVAMEIESSTRLMHASLLLIHHSRLT GIEFLFA
Sbjct: 121 SGSLCDCIRSVAMEIESSTRLMHASLLLIHHSRLTRGIEFLFA 163

[Close]
BLAST of CSPI07G14340 vs. TrEMBL
Match: A0A0A0LE08_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G740110 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 7.6e-24
Identity = 65/92 (70.65%), Postives = 73/92 (79.35%), Query Frame = 1 

Query: 7   RLLLCINLQEEPYHSTFTYLSCSSSNMASTDVDALASSFSVEKQFEHFRAQLQDSGSLCD 66
           RL L ++ QE+P  S  T   CSSS MA TD ++LASS SVEKQFEHFR QLQDSGSL D
Sbjct: 41  RLPLRVSRQEQPSRSVRTSTFCSSSTMAGTDANSLASSSSVEKQFEHFRTQLQDSGSLRD 100

Query: 67  RIRSVAMEIESSTRLMHASLLLIHHSRLTPGI 99
           RIRSVAMEIESSTRL+ ASLLL+H SRLTP +
Sbjct: 101 RIRSVAMEIESSTRLIQASLLLVHQSRLTPEV 132

[Close]
BLAST of CSPI07G14340 vs. TrEMBL
Match: A0A061ESQ4_THECC (Translin family protein isoform 2 OS=Theobroma cacao GN=TCM_022191 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 5.4e-14
Identity = 48/81 (59.26%), Postives = 60/81 (74.07%), Query Frame = 1 

Query: 18  PYHSTFTYLSCSSSNMASTDVDALASSFSVEKQFEHFRAQLQDSGSLCDRIRSVAMEIES 77
           P+ S  T   CS+S MAS D DA  +S S+EKQFE FR QL+DSGSL +RIR+V +EIES
Sbjct: 46  PFRSPVTATLCSTS-MASGDSDAPQTSPSLEKQFEKFRVQLEDSGSLRERIRAVVLEIES 105

Query: 78  STRLMHASLLLIHHSRLTPGI 99
           +TRLM ASLLL+H S+  P +
Sbjct: 106 ATRLMQASLLLVHQSKPIPEV 125

[Close]
BLAST of CSPI07G14340 vs. TrEMBL
Match: A0A061ES44_THECC (Translin family protein isoform 1 OS=Theobroma cacao GN=TCM_022191 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 5.4e-14
Identity = 48/81 (59.26%), Postives = 60/81 (74.07%), Query Frame = 1 

Query: 18  PYHSTFTYLSCSSSNMASTDVDALASSFSVEKQFEHFRAQLQDSGSLCDRIRSVAMEIES 77
           P+ S  T   CS+S MAS D DA  +S S+EKQFE FR QL+DSGSL +RIR+V +EIES
Sbjct: 46  PFRSPVTATLCSTS-MASGDSDAPQTSPSLEKQFEKFRVQLEDSGSLRERIRAVVLEIES 105

Query: 78  STRLMHASLLLIHHSRLTPGI 99
           +TRLM ASLLL+H S+  P +
Sbjct: 106 ATRLMQASLLLVHQSKPIPEV 125

[Close]
BLAST of CSPI07G14340 vs. TrEMBL
Match: F6HR38_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0040g01630 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.5e-11
Identity = 41/81 (50.62%), Postives = 58/81 (71.60%), Query Frame = 1 

Query: 18  PYHSTFTYLSCSSSNMASTDVDALASSFSVEKQFEHFRAQLQDSGSLCDRIRSVAMEIES 77
           P+ +    L  ++S+ +S   D  +SS  VEKQFE FR QL++SG L +R+R++AMEIES
Sbjct: 43  PFRNNAFRLLSATSHSSSMAEDGTSSS--VEKQFESFRCQLEESGGLRERVRAIAMEIES 102

Query: 78  STRLMHASLLLIHHSRLTPGI 99
           +TRLMHA+LLL+H SR  P +
Sbjct: 103 ATRLMHANLLLVHQSRSVPEV 121

[Close]
BLAST of CSPI07G14340 vs. TAIR10
Match: AT2G37020.2 (AT2G37020.2 Translin family protein)

HSP 1 Score: 65.5 bits (158), Expect = 2.3e-11
Identity = 36/75 (48.00%), Postives = 52/75 (69.33%), Query Frame = 1 

Query: 28  CSSSNMASTDVDALAS----SFSVEKQFEHFRAQLQDSGSLCDRIRSVAMEIESSTRLMH 87
           CS+S+ +S  +         S S+EKQFE FR QL++S +L ++IR+V MEIES+TRL+ 
Sbjct: 60  CSTSSFSSFYIPMAGGDGQVSHSLEKQFESFRVQLEESAALREQIRAVVMEIESATRLIQ 119

Query: 88  ASLLLIHHSRLTPGI 99
           A+LLL+H SR  P +
Sbjct: 120 ANLLLVHQSRPIPEV 134

[Close]
BLAST of CSPI07G14340 vs. NCBI nr
Match: gi|700189375|gb|KGN44608.1| (hypothetical protein Csa_7G342760 [Cucumis sativus])

HSP 1 Score: 191.0 bits (484), Expect = 1.0e-45
Identity = 100/103 (97.09%), Postives = 100/103 (97.09%), Query Frame = 1 

Query: 1   MLALLPRLLLCINLQEEPYHSTFTYLSCSSSNMASTDVDALASSFSVEKQFEHFRAQLQD 60
           MLALLPRLLLCINLQEEPYHSTFTYLSCSSSNMASTD DALASSFSVEKQFEHFRAQLQD
Sbjct: 61  MLALLPRLLLCINLQEEPYHSTFTYLSCSSSNMASTDADALASSFSVEKQFEHFRAQLQD 120

Query: 61  SGSLCDRIRSVAMEIESSTRLMHASLLLIHHSRLTPGIEFLFA 104
           SGSLCD IRSVAMEIESSTRLMHASLLLIHHSRLT GIEFLFA
Sbjct: 121 SGSLCDCIRSVAMEIESSTRLMHASLLLIHHSRLTRGIEFLFA 163

[Close]
BLAST of CSPI07G14340 vs. NCBI nr
Match: gi|449440117|ref|XP_004137831.1| (PREDICTED: translin [Cucumis sativus])

HSP 1 Score: 117.9 bits (294), Expect = 1.1e-23
Identity = 65/92 (70.65%), Postives = 73/92 (79.35%), Query Frame = 1 

Query: 7   RLLLCINLQEEPYHSTFTYLSCSSSNMASTDVDALASSFSVEKQFEHFRAQLQDSGSLCD 66
           RL L ++ QE+P  S  T   CSSS MA TD ++LASS SVEKQFEHFR QLQDSGSL D
Sbjct: 41  RLPLRVSRQEQPSRSVRTSTFCSSSTMAGTDANSLASSSSVEKQFEHFRTQLQDSGSLRD 100

Query: 67  RIRSVAMEIESSTRLMHASLLLIHHSRLTPGI 99
           RIRSVAMEIESSTRL+ ASLLL+H SRLTP +
Sbjct: 101 RIRSVAMEIESSTRLIQASLLLVHQSRLTPEV 132

[Close]
BLAST of CSPI07G14340 vs. NCBI nr
Match: gi|659084066|ref|XP_008442689.1| (PREDICTED: translin [Cucumis melo])

HSP 1 Score: 110.5 bits (275), Expect = 1.7e-21
Identity = 63/82 (76.83%), Postives = 67/82 (81.71%), Query Frame = 1 

Query: 19  YHSTFTYLSCSSSNMAST--DVDALASSFSVEKQFEHFRAQLQDSGSLCDRIRSVAMEIE 78
           + ST T   CSSS MA T  D DALASS SVEKQFEHFRAQLQDSGSL DRIRSVAMEIE
Sbjct: 49  HRSTRTSSFCSSSTMAGTNADTDALASSSSVEKQFEHFRAQLQDSGSLRDRIRSVAMEIE 108

Query: 79  SSTRLMHASLLLIHHSRLTPGI 99
           SSTRL+ ASLLL+H SRLTP +
Sbjct: 109 SSTRLIQASLLLVHQSRLTPEV 130

[Close]
BLAST of CSPI07G14340 vs. NCBI nr
Match: gi|590630758|ref|XP_007027368.1| (Translin family protein isoform 1 [Theobroma cacao])

HSP 1 Score: 85.1 bits (209), Expect = 7.8e-14
Identity = 48/81 (59.26%), Postives = 60/81 (74.07%), Query Frame = 1 

Query: 18  PYHSTFTYLSCSSSNMASTDVDALASSFSVEKQFEHFRAQLQDSGSLCDRIRSVAMEIES 77
           P+ S  T   CS+S MAS D DA  +S S+EKQFE FR QL+DSGSL +RIR+V +EIES
Sbjct: 46  PFRSPVTATLCSTS-MASGDSDAPQTSPSLEKQFEKFRVQLEDSGSLRERIRAVVLEIES 105

Query: 78  STRLMHASLLLIHHSRLTPGI 99
           +TRLM ASLLL+H S+  P +
Sbjct: 106 ATRLMQASLLLVHQSKPIPEV 125

[Close]
BLAST of CSPI07G14340 vs. NCBI nr
Match: gi|590630761|ref|XP_007027369.1| (Translin family protein isoform 2 [Theobroma cacao])

HSP 1 Score: 85.1 bits (209), Expect = 7.8e-14
Identity = 48/81 (59.26%), Postives = 60/81 (74.07%), Query Frame = 1 

Query: 18  PYHSTFTYLSCSSSNMASTDVDALASSFSVEKQFEHFRAQLQDSGSLCDRIRSVAMEIES 77
           P+ S  T   CS+S MAS D DA  +S S+EKQFE FR QL+DSGSL +RIR+V +EIES
Sbjct: 46  PFRSPVTATLCSTS-MASGDSDAPQTSPSLEKQFEKFRVQLEDSGSLRERIRAVVLEIES 105

Query: 78  STRLMHASLLLIHHSRLTPGI 99
           +TRLM ASLLL+H S+  P +
Sbjct: 106 ATRLMQASLLLVHQSKPIPEV 125

The following BLAST results are available for this feature:
BLAST of CSPI07G14340 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI07G14340 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K567_CUCSA7.0e-4697.09Uncharacterized protein OS=Cucumis sativus GN=Csa_7G342760 PE=4 SV=1[more]
A0A0A0LE08_CUCSA7.6e-2470.65Uncharacterized protein OS=Cucumis sativus GN=Csa_3G740110 PE=4 SV=1[more]
A0A061ESQ4_THECC5.4e-1459.26Translin family protein isoform 2 OS=Theobroma cacao GN=TCM_022191 PE=4 SV=1[more]
A0A061ES44_THECC5.4e-1459.26Translin family protein isoform 1 OS=Theobroma cacao GN=TCM_022191 PE=4 SV=1[more]
F6HR38_VITVI1.5e-1150.62Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0040g01630 PE=4 SV=... [more]
BLAST of CSPI07G14340 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G37020.22.3e-1148.00 Translin family protein[more]
BLAST of CSPI07G14340 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700189375|gb|KGN44608.1|1.0e-4597.09hypothetical protein Csa_7G342760 [Cucumis sativus][more]
gi|449440117|ref|XP_004137831.1|1.1e-2370.65PREDICTED: translin [Cucumis sativus][more]
gi|659084066|ref|XP_008442689.1|1.7e-2176.83PREDICTED: translin [Cucumis melo][more]
gi|590630758|ref|XP_007027368.1|7.8e-1459.26Translin family protein isoform 1 [Theobroma cacao][more]
gi|590630761|ref|XP_007027369.1|7.8e-1459.26Translin family protein isoform 2 [Theobroma cacao][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002848Translin_fam
IPR016068Translin_N
Vocabulary: Molecular Function
TermDefinition
GO:0043565sequence-specific DNA binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0043565 sequence-specific DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI07G14340.1CSPI07G14340.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002848TranslinPANTHERPTHR10741TRANSLIN AND TRANSLIN ASSOCIATED PROTEIN Xcoord: 12..90
score: 8.7
IPR016068Translin, N-terminalGENE3DG3DSA:1.20.58.190coord: 41..93
score: 8.
NoneNo IPR availablePANTHERPTHR10741:SF2TRANSLINcoord: 12..90
score: 8.7

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI07G14340Csa7G342760Cucumber (Chinese Long) v2cpicuB354
CSPI07G14340CsaV3_7G026110Cucumber (Chinese Long) v3cpicucB414
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI07G14340Wax gourdcpiwgoB717
CSPI07G14340Cucurbita maxima (Rimu)cmacpiB934
CSPI07G14340Cucumber (Gy14) v1cgycpiB079
CSPI07G14340Cucurbita maxima (Rimu)cmacpiB388
CSPI07G14340Cucurbita moschata (Rifu)cmocpiB377
CSPI07G14340Cucurbita moschata (Rifu)cmocpiB913
CSPI07G14340Melon (DHL92) v3.5.1cpimeB536
CSPI07G14340Melon (DHL92) v3.5.1cpimeB527
CSPI07G14340Watermelon (Charleston Gray)cpiwcgB554
CSPI07G14340Watermelon (97103) v1cpiwmB586
CSPI07G14340Cucurbita pepo (Zucchini)cpecpiB159
CSPI07G14340Cucurbita pepo (Zucchini)cpecpiB338
CSPI07G14340Bottle gourd (USVL1VR-Ls)cpilsiB517
CSPI07G14340Melon (DHL92) v3.6.1cpimedB513
CSPI07G14340Cucumber (Gy14) v2cgybcpiB331
CSPI07G14340Silver-seed gourdcarcpiB0099
CSPI07G14340Watermelon (97103) v2cpiwmbB597