Csa7G298830 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa7G298830
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Nucleolar protein 58
Location	Chr7 : 10468959 .. 10469694 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGCACAAAATTCAACCACATGAGATAGAGAAGCTGAAGGGCAGTGAGATGGATCAAGATATTAACGTAGAATCCAACTATGGCTACTGTGAAAGGAATCAGACAGTAAAAGTAGCAACAAAAACTACTGACTGAGGCCACAGAAAAATGTTAATGAAGAAATCAAGGTTCCCAAGATTAGGAGTACGGAAGGGATAGAAGTGGCTGAAGTAACATCGAAAGGCACAGCCAATCATAAAAAAGAAACACAACTCAATGCTGAAGCACGTAATGGCGATAAAGCAACCATGATAAATAAGAAACCATATGTTAAAACACAAGCACAAGCTTCTATTGATCGAGAGGCACAAGTATTAGACTGAGAATTTCCGCAGCCAAATCAAATAACTCGACCAGAATCAGGGAAGCAGGAAACATATAGAATATTCAGGAGTTGAAATAGCTTGAAACCGATAAAGAACCTGAAGATATAGGAAGTCCATATTTTCACAGACCGGTAAATCAGCATGAACAAAAAGAAGCTGATAAAAAAGGAAGAAGTTTCCAAACAAAAGATGAGATAAAAGACGCAAGAGAAGAATGGAAATTAACACATGAAGACTCCAGCAAGGAAGCAAAACAAGAGAAGAAACAAGATTCAAAACAGTTTAAAATGCGCACTTTAATCATCATTGCAGGGTCAGCTCTTCTTGCCTCCGTTGTAATTGTAGCGTTTAACTTTGGTGAAAAGTAA

mRNA sequence

ATGCAGCACAAAATTCAACCACATGAGATAGAGAAGCTGAAGGGCAGTGAGATGGATCAAGATATTAACGTAGAATCCAACTATGGCTACTGTGAAAGGAATCAGACAGTTCCCAAGATTAGGAGTACGGAAGGGATAGAAGTGGCTGAAGTAACATCGAAAGGCACAGCCAATCATAAAAAAGAAACACAACTCAATGCTGAAGCACGTAATGGCGATAAAGCAACCATGATAAATAAGAAACCATATGTTAAAACACAAGCACAAGCTTCTATTGATCGAGAGGCACAACTTGAAACCGATAAAGAACCTGAAGATATAGGAAGTCCATATTTTCACAGACCGGTAAATCAGCATGAACAAAAAGAAGCTGATAAAAAAGGAAGAAGTTTCCAAACAAAAGATGAGATAAAAGACGCAAGAGAAGAATGGAAATTAACACATGAAGACTCCAGCAAGGAAGCAAAACAAGAGAAGAAACAAGATTCAAAACAGTTTAAAATGCGCACTTTAATCATCATTGCAGGGTCAGCTCTTCTTGCCTCCGTTGTAATTGTAGCGTTTAACTTTGGTGAAAAGTAA

Coding sequence (CDS)

ATGCAGCACAAAATTCAACCACATGAGATAGAGAAGCTGAAGGGCAGTGAGATGGATCAAGATATTAACGTAGAATCCAACTATGGCTACTGTGAAAGGAATCAGACAGTTCCCAAGATTAGGAGTACGGAAGGGATAGAAGTGGCTGAAGTAACATCGAAAGGCACAGCCAATCATAAAAAAGAAACACAACTCAATGCTGAAGCACGTAATGGCGATAAAGCAACCATGATAAATAAGAAACCATATGTTAAAACACAAGCACAAGCTTCTATTGATCGAGAGGCACAACTTGAAACCGATAAAGAACCTGAAGATATAGGAAGTCCATATTTTCACAGACCGGTAAATCAGCATGAACAAAAAGAAGCTGATAAAAAAGGAAGAAGTTTCCAAACAAAAGATGAGATAAAAGACGCAAGAGAAGAATGGAAATTAACACATGAAGACTCCAGCAAGGAAGCAAAACAAGAGAAGAAACAAGATTCAAAACAGTTTAAAATGCGCACTTTAATCATCATTGCAGGGTCAGCTCTTCTTGCCTCCGTTGTAATTGTAGCGTTTAACTTTGGTGAAAAGTAA

Protein sequence

MQHKIQPHEIEKLKGSEMDQDINVESNYGYCERNQTVPKIRSTEGIEVAEVTSKGTANHKKETQLNAEARNGDKATMINKKPYVKTQAQASIDREAQLETDKEPEDIGSPYFHRPVNQHEQKEADKKGRSFQTKDEIKDAREEWKLTHEDSSKEAKQEKKQDSKQFKMRTLIIIAGSALLASVVIVAFNFGEK*

Homology

[Close]

BLAST of Csa7G298830 vs. TrEMBL
Match: A0A0A0K807_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G298830 PE=4 SV=1)

HSP 1 Score: 386.3 bits (991), Expect = 2.1e-104
Identity = 193/193 (100.00%), Postives = 193/193 (100.00%), Query Frame = 1


Query: 1   MQHKIQPHEIEKLKGSEMDQDINVESNYGYCERNQTVPKIRSTEGIEVAEVTSKGTANHK 60
           MQHKIQPHEIEKLKGSEMDQDINVESNYGYCERNQTVPKIRSTEGIEVAEVTSKGTANHK
Sbjct: 1   MQHKIQPHEIEKLKGSEMDQDINVESNYGYCERNQTVPKIRSTEGIEVAEVTSKGTANHK 60

Query: 61  KETQLNAEARNGDKATMINKKPYVKTQAQASIDREAQLETDKEPEDIGSPYFHRPVNQHE 120
           KETQLNAEARNGDKATMINKKPYVKTQAQASIDREAQLETDKEPEDIGSPYFHRPVNQHE
Sbjct: 61  KETQLNAEARNGDKATMINKKPYVKTQAQASIDREAQLETDKEPEDIGSPYFHRPVNQHE 120

Query: 121 QKEADKKGRSFQTKDEIKDAREEWKLTHEDSSKEAKQEKKQDSKQFKMRTLIIIAGSALL 180
           QKEADKKGRSFQTKDEIKDAREEWKLTHEDSSKEAKQEKKQDSKQFKMRTLIIIAGSALL
Sbjct: 121 QKEADKKGRSFQTKDEIKDAREEWKLTHEDSSKEAKQEKKQDSKQFKMRTLIIIAGSALL 180

Query: 181 ASVVIVAFNFGEK 194
           ASVVIVAFNFGEK
Sbjct: 181 ASVVIVAFNFGEK 193

[Close]

BLAST of Csa7G298830 vs. NCBI nr
Match: gi|700189234|gb|KGN44467.1| (hypothetical protein Csa_7G298830 [Cucumis sativus])

HSP 1 Score: 386.3 bits (991), Expect = 3.1e-104
Identity = 193/193 (100.00%), Postives = 193/193 (100.00%), Query Frame = 1


Query: 1   MQHKIQPHEIEKLKGSEMDQDINVESNYGYCERNQTVPKIRSTEGIEVAEVTSKGTANHK 60
           MQHKIQPHEIEKLKGSEMDQDINVESNYGYCERNQTVPKIRSTEGIEVAEVTSKGTANHK
Sbjct: 1   MQHKIQPHEIEKLKGSEMDQDINVESNYGYCERNQTVPKIRSTEGIEVAEVTSKGTANHK 60

Query: 61  KETQLNAEARNGDKATMINKKPYVKTQAQASIDREAQLETDKEPEDIGSPYFHRPVNQHE 120
           KETQLNAEARNGDKATMINKKPYVKTQAQASIDREAQLETDKEPEDIGSPYFHRPVNQHE
Sbjct: 61  KETQLNAEARNGDKATMINKKPYVKTQAQASIDREAQLETDKEPEDIGSPYFHRPVNQHE 120

Query: 121 QKEADKKGRSFQTKDEIKDAREEWKLTHEDSSKEAKQEKKQDSKQFKMRTLIIIAGSALL 180
           QKEADKKGRSFQTKDEIKDAREEWKLTHEDSSKEAKQEKKQDSKQFKMRTLIIIAGSALL
Sbjct: 121 QKEADKKGRSFQTKDEIKDAREEWKLTHEDSSKEAKQEKKQDSKQFKMRTLIIIAGSALL 180

Query: 181 ASVVIVAFNFGEK 194
           ASVVIVAFNFGEK
Sbjct: 181 ASVVIVAFNFGEK 193

The following BLAST results are available for this feature:

BLAST of Csa7G298830 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K807_CUCSA	2.1e-104	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G298830 PE=4 SV=1	[more]

BLAST of Csa7G298830 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700189234\|gb\|KGN44467.1\|	3.1e-104	100.00	hypothetical protein Csa_7G298830 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa7G298830.1	Csa7G298830.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa7G298830	Cla016397	Watermelon (97103) v1	cuwmB567
Csa7G298830	ClCG09G010170	Watermelon (Charleston Gray)	cuwcgB525
Csa7G298830	Lsi02G019710	Bottle gourd (USVL1VR-Ls)	culsiB503
Csa7G298830	Bhi09G001289	Wax gourd	cuwgoB707
Csa7G298830	CmaCh01G009720	Cucurbita maxima (Rimu)	cmacuB489
Csa7G298830	CmoCh01G010100	Cucurbita moschata (Rifu)	cmocuB478
Csa7G298830	Carg27781	Silver-seed gourd	carcuB0674

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa7G298830	Cucumber (Gy14) v1	cgycuB076
Csa7G298830	Cucurbita maxima (Rimu)	cmacuB043
Csa7G298830	Cucurbita maxima (Rimu)	cmacuB317
Csa7G298830	Cucurbita maxima (Rimu)	cmacuB777
Csa7G298830	Cucurbita moschata (Rifu)	cmocuB032
Csa7G298830	Cucurbita moschata (Rifu)	cmocuB305
Csa7G298830	Cucurbita moschata (Rifu)	cmocuB771
Csa7G298830	Melon (DHL92) v3.5.1	cumeB525
Csa7G298830	Cucurbita pepo (Zucchini)	cpecuB473
Csa7G298830	Cucurbita pepo (Zucchini)	cpecuB592
Csa7G298830	Cucurbita pepo (Zucchini)	cpecuB801
Csa7G298830	Cucumber (Gy14) v2	cgybcuB323
Csa7G298830	Melon (DHL92) v3.6.1	cumedB503
Csa7G298830	Silver-seed gourd	carcuB0069
Csa7G298830	Silver-seed gourd	carcuB0303
Csa7G298830	Silver-seed gourd	carcuB0853
Csa7G298830	Watermelon (97103) v2	cuwmbB571