Csa7G279800 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa7G279800
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr7 : 9893098 .. 9893765 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATATTAGAATTTGCATGAGGATCTCTCGACTCTCGCTCGGTATCAAAATCTTCTTTGGGAACTCTCGACTCTCAACTGAAGCCCTAATACAATCACTCGTAGAAAATAGGAGAGCCAAGTCATTTTGAGCTAGAATGCATCAAGTTCCTTCGGTATCAAAACCTTAGTGGGGAACTCTCGATATTCAACATAAGCCACAATACAATTGCCCGTAGAAAGTAGGAGACCCAAGCCGCTTCGAGCTAGAATGTGTCAGGTTCCTTCGGTATAAGAAACTGCGTGGTAACTCTCGACTCTTGGCTGAAGCCATATTACAATTACCCGTAGAAAGAAAGAGAGCCAAGCCGTTTCAGGCCAGAATGCGTTGGGTTCTTTCGATATTAGAACTACGTGAAGAACTTCGACTCTTGACCGAAGCTACATTACTATCGCTCGTAGAAATTAGGAGAGCCAGGCCGCTTTAGGCCATAGTGCATTGGGTTTCTTTGATATTGGAAAATGCGTGGGGAACTCTCGACTTTTGGCTGAAGCCACATTACAATTGCACGTAGAAAGTAGGAGAGACGAGCCGTTTCGGGCCAGAATGAGTCAAGTTCATTTCGTGTCAGAATCTACTTTAAGAACTCTCGACTCTCAACTGAAGCCACAATACAATCACTCGTAG

mRNA sequence

ATGGATATTAGAATTTGCATGAGGATCTCTCGACTCTCGCTCGGTATCAAAATCTTCTTTGGGAACTCTCGACTCTCAACTGAAGCCCTAATACAATCACTCAAAGTAGGAGACCCAAGCCGCTTCGAGCTAGAATGTGTCAGGTTCCTTCGGTATAAGAAACTGCGTGGTAACTCTCGACTCTTGGCTGAAGCCATATTACAATTACCCGTAGAAAGAAAGAGAGCCAAGCCGTTTCAGGCCAGAATGCGTTGGGAGAGCCAGGCCGCTTTAGGCCATAGTGCATTGGGTTTCTTTGATATTGGAAAATGCGTGGGGAACTCTCGACTTTTGGCTGAAGCCACATTACAATTGCACGTAGAAAGTAGGAGAGACGAGCCGTTTCGGGCCAGAATGAGTCAAGTTCATTTCGTGTCAGAATCTACTTTAAGAACTCTCGACTCTCAACTGAAGCCACAATACAATCACTCGTAG

Coding sequence (CDS)

ATGGATATTAGAATTTGCATGAGGATCTCTCGACTCTCGCTCGGTATCAAAATCTTCTTTGGGAACTCTCGACTCTCAACTGAAGCCCTAATACAATCACTCAAAGTAGGAGACCCAAGCCGCTTCGAGCTAGAATGTGTCAGGTTCCTTCGGTATAAGAAACTGCGTGGTAACTCTCGACTCTTGGCTGAAGCCATATTACAATTACCCGTAGAAAGAAAGAGAGCCAAGCCGTTTCAGGCCAGAATGCGTTGGGAGAGCCAGGCCGCTTTAGGCCATAGTGCATTGGGTTTCTTTGATATTGGAAAATGCGTGGGGAACTCTCGACTTTTGGCTGAAGCCACATTACAATTGCACGTAGAAAGTAGGAGAGACGAGCCGTTTCGGGCCAGAATGAGTCAAGTTCATTTCGTGTCAGAATCTACTTTAAGAACTCTCGACTCTCAACTGAAGCCACAATACAATCACTCGTAG

Protein sequence

MDIRICMRISRLSLGIKIFFGNSRLSTEALIQSLKVGDPSRFELECVRFLRYKKLRGNSRLLAEAILQLPVERKRAKPFQARMRWESQAALGHSALGFFDIGKCVGNSRLLAEATLQLHVESRRDEPFRARMSQVHFVSESTLRTLDSQLKPQYNHS*

Homology

[Close]

BLAST of Csa7G279800 vs. TrEMBL
Match: A0A0A0K4I4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G279800 PE=4 SV=1)

HSP 1 Score: 309.7 bits (792), Expect = 2.1e-81
Identity = 157/157 (100.00%), Postives = 157/157 (100.00%), Query Frame = 1


Query: 1   MDIRICMRISRLSLGIKIFFGNSRLSTEALIQSLKVGDPSRFELECVRFLRYKKLRGNSR 60
           MDIRICMRISRLSLGIKIFFGNSRLSTEALIQSLKVGDPSRFELECVRFLRYKKLRGNSR
Sbjct: 1   MDIRICMRISRLSLGIKIFFGNSRLSTEALIQSLKVGDPSRFELECVRFLRYKKLRGNSR 60

Query: 61  LLAEAILQLPVERKRAKPFQARMRWESQAALGHSALGFFDIGKCVGNSRLLAEATLQLHV 120
           LLAEAILQLPVERKRAKPFQARMRWESQAALGHSALGFFDIGKCVGNSRLLAEATLQLHV
Sbjct: 61  LLAEAILQLPVERKRAKPFQARMRWESQAALGHSALGFFDIGKCVGNSRLLAEATLQLHV 120

Query: 121 ESRRDEPFRARMSQVHFVSESTLRTLDSQLKPQYNHS 158
           ESRRDEPFRARMSQVHFVSESTLRTLDSQLKPQYNHS
Sbjct: 121 ESRRDEPFRARMSQVHFVSESTLRTLDSQLKPQYNHS 157

[Close]

BLAST of Csa7G279800 vs. TrEMBL
Match: A0A0A0K4H8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G279750 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 3.3e-10
Identity = 48/101 (47.52%), Postives = 57/101 (56.44%), Query Frame = 1


Query: 57  GNSRLLAEAILQLPVERKRAKPFQARMRWESQAALGHSALGFFDIGKCVGNSRLLAEATL 116
           G S +     LQ PVE    K  QARMR      +  +A   FDI K V N+RLL EATL
Sbjct: 19  GRSHITIAPTLQSPVESSIIKTLQARMR-----QVPSNASSSFDIRKYVENTRLLVEATL 78

Query: 117 QLHVESRRDEPFRARMSQVHFVSESTLRTLDSQLKPQYNHS 158
           Q  VE RR +P RARM +V  + +    TLDS+LK QYN S
Sbjct: 79  QSPVERRRAKPIRARMHRVPSILKLVWSTLDSRLKLQYNCS 114

[Close]

BLAST of Csa7G279800 vs. TrEMBL
Match: A0A0A0K4H8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G279750 PE=4 SV=1)

HSP 1 Score: 41.2 bits (95), Expect = 1.4e+00
Identity = 20/31 (64.52%), Postives = 24/31 (77.42%), Query Frame = 1


Query: 53 KKLRGNSRLLAEAILQLPVERKRAKPFQARM 84
          +K   N+RLL EA LQ PVER+RAKP +ARM
Sbjct: 59 RKYVENTRLLVEATLQSPVERRRAKPIRARM 89

[Close]

BLAST of Csa7G279800 vs. NCBI nr
Match: gi|700189165|gb|KGN44398.1| (hypothetical protein Csa_7G279800 [Cucumis sativus])

HSP 1 Score: 309.7 bits (792), Expect = 3.0e-81
Identity = 157/157 (100.00%), Postives = 157/157 (100.00%), Query Frame = 1


Query: 1   MDIRICMRISRLSLGIKIFFGNSRLSTEALIQSLKVGDPSRFELECVRFLRYKKLRGNSR 60
           MDIRICMRISRLSLGIKIFFGNSRLSTEALIQSLKVGDPSRFELECVRFLRYKKLRGNSR
Sbjct: 1   MDIRICMRISRLSLGIKIFFGNSRLSTEALIQSLKVGDPSRFELECVRFLRYKKLRGNSR 60

Query: 61  LLAEAILQLPVERKRAKPFQARMRWESQAALGHSALGFFDIGKCVGNSRLLAEATLQLHV 120
           LLAEAILQLPVERKRAKPFQARMRWESQAALGHSALGFFDIGKCVGNSRLLAEATLQLHV
Sbjct: 61  LLAEAILQLPVERKRAKPFQARMRWESQAALGHSALGFFDIGKCVGNSRLLAEATLQLHV 120

Query: 121 ESRRDEPFRARMSQVHFVSESTLRTLDSQLKPQYNHS 158
           ESRRDEPFRARMSQVHFVSESTLRTLDSQLKPQYNHS
Sbjct: 121 ESRRDEPFRARMSQVHFVSESTLRTLDSQLKPQYNHS 157

[Close]

BLAST of Csa7G279800 vs. NCBI nr
Match: gi|700189160|gb|KGN44393.1| (hypothetical protein Csa_7G279750 [Cucumis sativus])

HSP 1 Score: 73.2 bits (178), Expect = 4.7e-10
Identity = 48/101 (47.52%), Postives = 57/101 (56.44%), Query Frame = 1


Query: 57  GNSRLLAEAILQLPVERKRAKPFQARMRWESQAALGHSALGFFDIGKCVGNSRLLAEATL 116
           G S +     LQ PVE    K  QARMR      +  +A   FDI K V N+RLL EATL
Sbjct: 19  GRSHITIAPTLQSPVESSIIKTLQARMR-----QVPSNASSSFDIRKYVENTRLLVEATL 78

Query: 117 QLHVESRRDEPFRARMSQVHFVSESTLRTLDSQLKPQYNHS 158
           Q  VE RR +P RARM +V  + +    TLDS+LK QYN S
Sbjct: 79  QSPVERRRAKPIRARMHRVPSILKLVWSTLDSRLKLQYNCS 114

[Close]

BLAST of Csa7G279800 vs. NCBI nr
Match: gi|700189160|gb|KGN44393.1| (hypothetical protein Csa_7G279750 [Cucumis sativus])

HSP 1 Score: 41.2 bits (95), Expect = 2.0e+00
Identity = 20/31 (64.52%), Postives = 24/31 (77.42%), Query Frame = 1


Query: 53 KKLRGNSRLLAEAILQLPVERKRAKPFQARM 84
          +K   N+RLL EA LQ PVER+RAKP +ARM
Sbjct: 59 RKYVENTRLLVEATLQSPVERRRAKPIRARM 89

The following BLAST results are available for this feature:

BLAST of Csa7G279800 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K4I4_CUCSA	2.1e-81	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G279800 PE=4 SV=1	[more]
A0A0A0K4H8_CUCSA	3.3e-10	47.52	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G279750 PE=4 SV=1	[more]
A0A0A0K4H8_CUCSA	1.4e+00	64.52	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G279750 PE=4 SV=1	[more]

BLAST of Csa7G279800 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700189165\|gb\|KGN44398.1\|	3.0e-81	100.00	hypothetical protein Csa_7G279800 [Cucumis sativus]	[more]
gi\|700189160\|gb\|KGN44393.1\|	4.7e-10	47.52	hypothetical protein Csa_7G279750 [Cucumis sativus]	[more]
gi\|700189160\|gb\|KGN44393.1\|	2.0e+00	64.52	hypothetical protein Csa_7G279750 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU150407	cucumber EST collection version 3.0	transcribed_cluster
CU157171	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa7G279800.1	Csa7G279800.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU150407	CU150407	transcribed_cluster
CU157171	CU157171	transcribed_cluster

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa7G279800	Watermelon (Charleston Gray)	cuwcgB525
Csa7G279800	Watermelon (97103) v1	cuwmB567
Csa7G279800	Bottle gourd (USVL1VR-Ls)	culsiB503
Csa7G279800	Cucumber (Gy14) v2	cgybcuB323
Csa7G279800	Watermelon (97103) v2	cuwmbB571
Csa7G279800	Wax gourd	cuwgoB707
Csa7G279800	Cucumber (Gy14) v1	cgycuB348