Csa7G238960 (gene) Cucumber (Chinese Long) v2
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GGCGGTCACCGACTGCCTGAATCGGTCATCGAAGCTCCAATCACGAATCACCCAATTTCACGATCTTCGTTCAATTTTGCTATGGCCGGAAGCGAAAGGAAATCCAAGGAGAAAAGGAAGCATAGAAAATCGGTTTCATCTTCTGATGGTTACTCATATCTGTTCTTCTTTCCTCTATGCACCTCCCCTCTTTTAATATGTTTTTACTCAACTATTTTCAAGAATTTCTACCAAATACAAGCAGTGCTCCTACAGACATTTGCTTTTTTGCTTTTCTTGGACTGTATTCTTCACTAATCTATGGTGGATTGCACTGTGTGCTGTGTTAATGCTATTGTTTGTAAAAATTCAGACGACAAGAGAAGCAAGAGACCAAGAGCTGCAGAAGATGAGGAAAGGGAAAGCAGAAGGAGTGATAAGAGAGAGAAGCGGAAGGAGAAGAAATCTCACAAGCACTCTAAACGCCACTCAGGTAAACTCGAATTGCCAATTTGCAGAAATATGCATGTTACGGTTCCTGTTTGATATCATTATGTTTCATCTCATAGCTGGTCGACTGGTTGTTTTTTGGTATTAAACTGACTTTGAAATGTGGATACTATGGCTAGGTTATGTACAAATCAAAATCCTTTTATTTTCTTATATTCTTCAAATTTATTATCTCTGCTATTTTTTCAATCTCTTTCTCCAAATTAATGTTTGAAAGGAACTTGTGGTTTCAAGAAAGACGCAGATGCAGATGCAGATGTAAACTTTTACTTGTTTTACTTTTTGATCCGGATTGTGAAGAAGTACTTTATAAATATGTTTTCAAAGTAAAGTTTTGTCATGCCCTGCATTTTTCTCTCAGAGAAGAAGTCGAAGGATCTTCACAAAGGCAAGCATCACAAGGGCGATCACCTTTCAGTGAGTTCTTCTGTAATGATAAAGCATGCACATAGTTTATGTGTTTTACTTTTTCTACTTGATTATCCCTGCATTTCTCCTCTGTTTATTATTCTTTAATGGGTTTGGGAAGTACAGACGTAGGAAATGGATTGCAATGCTCTATATAAGAAGTTTTGATTTATCATGCTTTTGTTGTTTTCCCCCCCTACTTTCACTGTCTTAATTTTTAGTGTTATATCTTTAGGTATTCAAATCCAGCAAATTTTGTTATAGATTATCCTATTTCGAGATCATCTTAAATGTCCTTGAGATATGTTAACTCAAACATATTGTAGGTAGTGAAGATGTCTGGAAAATTTTGGATTGTTTTTCACTCTTTACTATTTCTAATTCATGGGTCTGTGCAGCTCAACTCAATTTATGGGATCACTGGATGTGAGTGAGGTTGCACAAGGATATAACTGAGGAGAGTTGTTATAGATTATGGAAAGTTACCTGGTGTCTAAGGTTTTGGTTCAGGTTTGTAGAGGGCTAGAAATTACTAATATAAGTTGCACAAGGGGAAGGTGCTTGCAAATTTGCAATCTAAAATCCAGCTTGTCATAACTTAGGATTCCTATTCTTTATTATTTTTCTTTTGCTTTTTGACATGAAAGAACCAGTTTTCATATCAAATTATTTGGTGCTATTTCACTGTATTAGGCTACTTGAATATAGAAGTTAATTTTAATATAGTTGCAATAAGGTTGCCCTATCACCACTTCTGAAGTATATTAACCATGTACTCCATTCCTTAGTTTTAGACAGAGTCTTATACAGAAAATTAAGCACAATCATGATACATGGTTCTAGAAAAGTGAATTATTTAGCAGGTGTGGTTACCCTGAAGAATTAAATCAACCAATTCCTTTTCAAAGTGAATTATGGTGTCTAGACTGGACAAAATAGGAGAAACATCTGGGTTTTATCCATATTTTTTTGTAGTTTAGCTTCTACCGAACTTCCTGTTTCTATAAATTTCTTTCCTGCCTCATCCGATTGTTGTGAACCTTGCATACTACATGATTCAGCCGGCTAATTACTGCGACTGGCATGGTCTTTGGGGATGTTTAGAAAATGTCAAGGACTAGCAATCATTGTTCAAATTCAACTTCACGTCATTGTTTTCCACTTAAACCTTGTTTTGTTTGCTACTTCTACAGAACTCCTTGCAAGATTTGTTCATCGTAGTATTTTTCTATTGCTTTTTCAGAAATTAAATGTAATGCCCTAGTTTATTTATTTATCATTATTACTTTTTTTTGGAATTGCAAGGTATATACTATCTCCTATTTCTTGTTATTGAGCTATGACCCTCTGGTTCTCTGGGTTTAATATTACTTTTGTTGATCTAGAGAGCCAAAATTCAAGAACTGTCCAAGGAAGACTATTTCTCAAAGAATAATGAGTTTGCTACCTGGTTGAAAGATGTGAAGAATGTGTATTTTTCTGATCTTTCTTCAGAGTCTGCTCGCGAACTTTTCTCAGATTTTGTTGAACTGTGGAATGACAGAAAGCTTGAATCTCGATATTACGAGGGTATTTCAAGTGGGCCTCGGACATCCCATAACTGGAAAATCAAGGGGTGATAACTTAGCAAGCATGGATTGAAGTAACAAAGAATTGAATGAACAAGATTGTCTGAATTATTGCATTTTGGTTTTCCGCTATACTAGTAGTTTCTAGCCAGCGGATTGTATCCTCTTACAAACACCGGATGCATAAGAGAATTCAATGTTCTCCGTAGAATTATAGTCTTACCCTTGCTTCTGATATGGAGTGTATTACTTTTCTTATTTCGATGTATCGGAAAACGTAGAAATGAATCTTTGTTTATAAACTAGAGTATTTAGAAACTTCTATTCTTTTTATCATTGAAGGATTTGTGGC ATGGCCGGAAGCGAAAGGAAATCCAAGGAGAAAAGGAAGCATAGAAAATCGGTTTCATCTTCTGATGACGACAAGAGAAGCAAGAGACCAAGAGCTGCAGAAGATGAGGAAAGGGAAAGCAGAAGGAGTGATAAGAGAGAGAAGCGGAAGGAGAAGAAATCTCACAAGCACTCTAAACGCCACTCAGAGAAGAAGTCGAAGGATCTTCACAAAGGCAAGCATCACAAGGGCGATCACCTTTCAAGAGCCAAAATTCAAGAACTGTCCAAGGAAGACTATTTCTCAAAGAATAATGAGTTTGCTACCTGGTTGAAAGATGTGAAGAATGTGTATTTTTCTGATCTTTCTTCAGAGTCTGCTCGCGAACTTTTCTCAGATTTTGTTGAACTGTGGAATGACAGAAAGCTTGAATCTCGATATTACGAGGGTATTTCAAGTGGGCCTCGGACATCCCATAACTGGAAAATCAAGGGGTGA ATGGCCGGAAGCGAAAGGAAATCCAAGGAGAAAAGGAAGCATAGAAAATCGGTTTCATCTTCTGATGACGACAAGAGAAGCAAGAGACCAAGAGCTGCAGAAGATGAGGAAAGGGAAAGCAGAAGGAGTGATAAGAGAGAGAAGCGGAAGGAGAAGAAATCTCACAAGCACTCTAAACGCCACTCAGAGAAGAAGTCGAAGGATCTTCACAAAGGCAAGCATCACAAGGGCGATCACCTTTCAAGAGCCAAAATTCAAGAACTGTCCAAGGAAGACTATTTCTCAAAGAATAATGAGTTTGCTACCTGGTTGAAAGATGTGAAGAATGTGTATTTTTCTGATCTTTCTTCAGAGTCTGCTCGCGAACTTTTCTCAGATTTTGTTGAACTGTGGAATGACAGAAAGCTTGAATCTCGATATTACGAGGGTATTTCAAGTGGGCCTCGGACATCCCATAACTGGAAAATCAAGGGGTGA MAGSERKSKEKRKHRKSVSSSDDDKRSKRPRAAEDEERESRRSDKREKRKEKKSHKHSKRHSEKKSKDLHKGKHHKGDHLSRAKIQELSKEDYFSKNNEFATWLKDVKNVYFSDLSSESARELFSDFVELWNDRKLESRYYEGISSGPRTSHNWKIKG*
BLAST of Csa7G238960 vs. Swiss-Prot
Match: PXR1_YARLI (Protein PXR1 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=PXR1 PE=3 SV=1) HSP 1 Score: 56.2 bits (134), Expect = 3.7e-07 Identity = 31/79 (39.24%), Postives = 42/79 (53.16%), Query Frame = 1
HSP 2 Score: 49.7 bits (117), Expect = 3.5e-05 Identity = 35/107 (32.71%), Postives = 52/107 (48.60%), Query Frame = 1
HSP 3 Score: 43.5 bits (101), Expect = 2.5e-03 Identity = 37/115 (32.17%), Postives = 52/115 (45.22%), Query Frame = 1
BLAST of Csa7G238960 vs. Swiss-Prot
Match: NKAP_HUMAN (NF-kappa-B-activating protein OS=Homo sapiens GN=NKAP PE=1 SV=1) HSP 1 Score: 54.3 bits (129), Expect = 1.4e-06 Identity = 23/63 (36.51%), Postives = 38/63 (60.32%), Query Frame = 1
HSP 2 Score: 45.8 bits (107), Expect = 5.0e-04 Identity = 27/82 (32.93%), Postives = 43/82 (52.44%), Query Frame = 1
HSP 3 Score: 39.7 bits (91), Expect = 3.6e-02 Identity = 26/88 (29.55%), Postives = 41/88 (46.59%), Query Frame = 1
HSP 4 Score: 35.0 bits (79), Expect = 8.9e-01 Identity = 33/133 (24.81%), Postives = 59/133 (44.36%), Query Frame = 1
HSP 5 Score: 28.9 bits (63), Expect = 6.4e+01 Identity = 30/136 (22.06%), Postives = 52/136 (38.24%), Query Frame = 1
BLAST of Csa7G238960 vs. Swiss-Prot
Match: NKAP_RAT (NF-kappa-B-activating protein OS=Rattus norvegicus GN=Nkap PE=2 SV=1) HSP 1 Score: 53.5 bits (127), Expect = 2.4e-06 Identity = 22/63 (34.92%), Postives = 37/63 (58.73%), Query Frame = 1
HSP 2 Score: 50.1 bits (118), Expect = 2.7e-05 Identity = 33/107 (30.84%), Postives = 46/107 (42.99%), Query Frame = 1
HSP 3 Score: 45.1 bits (105), Expect = 8.6e-04 Identity = 36/129 (27.91%), Postives = 54/129 (41.86%), Query Frame = 1
BLAST of Csa7G238960 vs. Swiss-Prot
Match: F133A_HUMAN (Protein FAM133A OS=Homo sapiens GN=FAM133A PE=1 SV=1) HSP 1 Score: 53.1 bits (126), Expect = 3.2e-06 Identity = 42/137 (30.66%), Postives = 63/137 (45.99%), Query Frame = 1
HSP 2 Score: 37.7 bits (86), Expect = 1.4e-01 Identity = 23/77 (29.87%), Postives = 40/77 (51.95%), Query Frame = 1
BLAST of Csa7G238960 vs. Swiss-Prot
Match: CWC22_DROME (Pre-mRNA-splicing factor CWC22 homolog OS=Drosophila melanogaster GN=ncm PE=1 SV=3) HSP 1 Score: 52.8 bits (125), Expect = 4.1e-06 Identity = 28/98 (28.57%), Postives = 52/98 (53.06%), Query Frame = 1
HSP 2 Score: 38.9 bits (89), Expect = 6.1e-02 Identity = 36/131 (27.48%), Postives = 52/131 (39.69%), Query Frame = 1
HSP 3 Score: 37.7 bits (86), Expect = 1.4e-01 Identity = 24/97 (24.74%), Postives = 43/97 (44.33%), Query Frame = 1
BLAST of Csa7G238960 vs. TrEMBL
Match: A0A0A0K434_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G238960 PE=4 SV=1) HSP 1 Score: 323.9 bits (829), Expect = 1.1e-85 Identity = 158/158 (100.00%), Postives = 158/158 (100.00%), Query Frame = 1
BLAST of Csa7G238960 vs. TrEMBL
Match: M5WI24_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012587mg PE=4 SV=1) HSP 1 Score: 224.6 bits (571), Expect = 8.8e-56 Identity = 110/161 (68.32%), Postives = 135/161 (83.85%), Query Frame = 1
BLAST of Csa7G238960 vs. TrEMBL
Match: A0A0D2VFA7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G142800 PE=4 SV=1) HSP 1 Score: 206.8 bits (525), Expect = 1.9e-50 Identity = 102/159 (64.15%), Postives = 125/159 (78.62%), Query Frame = 1
BLAST of Csa7G238960 vs. TrEMBL
Match: W9R2W8_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_016229 PE=4 SV=1) HSP 1 Score: 206.1 bits (523), Expect = 3.2e-50 Identity = 103/161 (63.98%), Postives = 132/161 (81.99%), Query Frame = 1
BLAST of Csa7G238960 vs. TrEMBL
Match: A0A0B0PHK7_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_29903 PE=4 SV=1) HSP 1 Score: 203.8 bits (517), Expect = 1.6e-49 Identity = 101/159 (63.52%), Postives = 124/159 (77.99%), Query Frame = 1
BLAST of Csa7G238960 vs. TAIR10
Match: AT1G79200.1 (AT1G79200.1 unknown protein) HSP 1 Score: 166.4 bits (420), Expect = 1.4e-41 Identity = 89/156 (57.05%), Postives = 107/156 (68.59%), Query Frame = 1
BLAST of Csa7G238960 vs. TAIR10
Match: AT5G53800.1 (AT5G53800.1 unknown protein) HSP 1 Score: 69.7 bits (169), Expect = 1.8e-12 Identity = 41/147 (27.89%), Postives = 69/147 (46.94%), Query Frame = 1
HSP 2 Score: 65.5 bits (158), Expect = 3.5e-11 Identity = 51/166 (30.72%), Postives = 69/166 (41.57%), Query Frame = 1
BLAST of Csa7G238960 vs. TAIR10
Match: AT3G28770.1 (AT3G28770.1 Protein of unknown function (DUF1216)) HSP 1 Score: 50.4 bits (119), Expect = 1.2e-06 Identity = 34/121 (28.10%), Postives = 59/121 (48.76%), Query Frame = 1
HSP 2 Score: 45.1 bits (105), Expect = 4.8e-05 Identity = 26/96 (27.08%), Postives = 51/96 (53.12%), Query Frame = 1
HSP 3 Score: 41.2 bits (95), Expect = 7.0e-04 Identity = 29/93 (31.18%), Postives = 44/93 (47.31%), Query Frame = 1
BLAST of Csa7G238960 vs. TAIR10
Match: AT4G15030.2 (AT4G15030.2 FUNCTIONS IN: molecular_function unknown) HSP 1 Score: 48.5 bits (114), Expect = 4.4e-06 Identity = 25/73 (34.25%), Postives = 39/73 (53.42%), Query Frame = 1
HSP 2 Score: 39.3 bits (90), Expect = 2.7e-03 Identity = 24/82 (29.27%), Postives = 40/82 (48.78%), Query Frame = 1
HSP 3 Score: 33.1 bits (74), Expect = 1.9e-01 Identity = 16/59 (27.12%), Postives = 27/59 (45.76%), Query Frame = 1
BLAST of Csa7G238960 vs. NCBI nr
Match: gi|449444142|ref|XP_004139834.1| (PREDICTED: protein FAM133B [Cucumis sativus]) HSP 1 Score: 323.9 bits (829), Expect = 1.5e-85 Identity = 158/158 (100.00%), Postives = 158/158 (100.00%), Query Frame = 1
BLAST of Csa7G238960 vs. NCBI nr
Match: gi|659092525|ref|XP_008447104.1| (PREDICTED: protein PXR1 isoform X2 [Cucumis melo]) HSP 1 Score: 313.9 bits (803), Expect = 1.6e-82 Identity = 152/158 (96.20%), Postives = 154/158 (97.47%), Query Frame = 1
BLAST of Csa7G238960 vs. NCBI nr
Match: gi|659092523|ref|XP_008447103.1| (PREDICTED: protein FAM133A isoform X1 [Cucumis melo]) HSP 1 Score: 264.2 bits (674), Expect = 1.4e-67 Identity = 137/168 (81.55%), Postives = 141/168 (83.93%), Query Frame = 1
BLAST of Csa7G238960 vs. NCBI nr
Match: gi|595875362|ref|XP_007212175.1| (hypothetical protein PRUPE_ppa012587mg [Prunus persica]) HSP 1 Score: 224.6 bits (571), Expect = 1.3e-55 Identity = 110/161 (68.32%), Postives = 135/161 (83.85%), Query Frame = 1
BLAST of Csa7G238960 vs. NCBI nr
Match: gi|645239419|ref|XP_008226116.1| (PREDICTED: protein PXR1 [Prunus mume]) HSP 1 Score: 223.8 bits (569), Expect = 2.2e-55 Identity = 110/161 (68.32%), Postives = 135/161 (83.85%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
This gene is associated with the following unigenes:
The following mRNA feature(s) are a part of this gene:
The following transcribed_cluster feature(s) are associated with this gene:
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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