Csa7G209550 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa7G209550
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	RING finger family protein; contains IPR013083 (Zinc finger, RING/FYVE/PHD-type)
Location	Chr7 : 7437486 .. 7439667 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAATTCTTCAAACTCTTTGACATGTTCCTGATTTCTTGTTCTGAGTTTACCATGCTGGTTCTTGAGTTTAAGGAGCAGCTTTTTTTCCATAAACCTCTTCGCTTCCTCACCGAAGCTTTGAAGATGATCACCTTCGCTTTGTTCCTCTCTCTTCTCGCTCTAGGTATGATGTCTCATCTCAATAAACTATTTGATACACGATAACACACCATAGATTGGGGTTTAATTAATAATATGGTTGCGAAAATATATAGTAAAAGAATCAGTATAATTGTTTTTGTTTTTCCGCCCTAAATTTAATTTGTACAGTTGGTGCGTCTGTGGGAACTGTGATCGGAGCCTTCAAAGGGCATGGCACGGGGATAGGCGCTATTGCCGGCGCGGCCGTAGCCCTTCAGATATTCAGCTCCAGTGCATCCGGGCATAGATATTGTTTATCAAGGGTAGGCTTTTCAGTATATCAAAGGTTAGAAGGAAAAATGTCATTTGAAATAATGGATATGTTTTTCTAGTCAAATTCATAAAACTTTAAAACTTCAAGTTATAGGTTTATTTCTTTAATTGTGTGTTTAAAATTAACACATAACTAAACTCTAAAAATGGCTAACAACCTTTTATATTTAATACATTTATATTTTGGATTTAATTTTTTAAAAAAAATGAAGTGATGTATATTAATTATAAAAGTAAATTTGGACCTATATTTTTAATTTTGTATTAAGTGGATAGATGAAATATTTATGAACCAAAATAAAATAAAGTAAAATACCTATTAGATATAAAATTAAAAGTTTTAAGAACCAATCATTACACTCTAAAATTTGGAGAACAATTAGGTAATATTTTATAGACTAAATTTATTTGCTAATTTACAGCAATATTTACTATTGGATTGAGCCTAGCTAATTGCTATATTTACGATGTATTTTAAAAAAATATATCAAATAATTAACTTTTAATATCAATGTTTTTATCCTTTTTTCCCTCTTCCTTAGACTGCATTTGATTGTGGCAGGAAGCAATAATGGAGAGGCTGATGGATGGGAAGGGGTTGATGAACTGGGTAAGTGAAAAAGCTTGAATAATGCTACCTTTAATGGCAGATTTTAAGATTCAATATTTTTCTAAAGATAAAAAATTTCAGGCAAGCAACTTCTCTGAGTATATGTATCGAGAGATATCGGAGTTTGTCGACGTTGCCGGAGAAAGTTGTGTAGAAGGGTTGTCGATGGAGAGTGTCCAAATGTTACCTGTTTGTGAATATGATCACACCACTGTCAACTCAATTTCTTGTTCTATTTGCTTAGAGGTAAATATTTATATATATATAATTATATTCTTTTGTCTAAAATATATTAAAGGCGTGTTTGAATTAACTTTCTTAAAGAAAGAATGTTTGGAGTAAGTAATAATTTATTGTAGTTTTGAGTTATTATCGTTGAATTATAATAGATTGTGTTTGAGTCATAGATTATTGTTTGAAATAACACAATATTTTTTAAAACAAAGAACTAAAATGGAATTTTTATCAATTTTTTTTTATTAAAAAAAGAAAGCTTACATGAATGTTTACAAATTTCTTCAGCCATGCAGAGAATTCTAATTGCTGTTGATTAAATGGAAAATAATTCAAAATAATTGTTTTTGTCTAAACTTTGGAATCTAATACAAATGGTTAAAAAAAAAATGAAAATTATAGCCTAAATAAAAATATTTGAAAATGGAGAGTAAAAACCAACCATTTCAAAGTTGAAAGAAAATATAATATATACTAAATAAAATNTACTAAATAAAATAAATTTTCAAATAATCTAAAATAAGTGAAACTATTTATAAATATAACCATAGGTGAAATTTTTTTTATAGATACAAAAGTTTTATTATATTGGAGAGAATGGACCTAATTAATTAAAAAGAAATCCAGTTACATTGATGGTTATGTGTATGTAATGTTTAAAAAATAAGAAAAGGTCAATTAATGTCTTTTAAAGCCAATGATTTCTTTCAAACTTTTCTTTTTAAAAGAATATTTATGTTTGGTCACATTTTTCAGGAATTTGAAGATGGAGAAATTGGTAGGATACTTCCAAATTGTGATCATTTCTTTCATGTGGTTTGCATAGACCAATGGCTACACTTGCATGGATCTTGCCCATTTTGTAGGAAATTTTGTATTTAA

mRNA sequence

ATGCAATTCTTCAAACTCTTTGACATGTTCCTGATTTCTTGTTCTGAGTTTACCATGCTGGTTCTTGAGTTTAAGGAGCAGCTTTTTTTCCATAAACCTCTTCGCTTCCTCACCGAAGCTTTGAAGATGATCACCTTCGCTTTGTTCCTCTCTCTTCTCGCTCTAGTTGGTGCGTCTGTGGGAACTGTGATCGGAGCCTTCAAAGGGCATGGCACGGGGATAGGCGCTATTGCCGGCGCGGCCGTAGCCCTTCAGATATTCAGCTCCAGTGCATCCGGGCATAGATATTGTTTATCAAGGGAAGCAATAATGGAGAGGCTGATGGATGGGAAGGGGTTGATGAACTGGGCAAGCAACTTCTCTGAGTATATGTATCGAGAGATATCGGAGTTTGTCGACGTTGCCGGAGAAAGTTGTGTAGAAGGGTTGTCGATGGAGAGTGTCCAAATGTTACCTGTTTGTGAATATGATCACACCACTGTCAACTCAATTTCTTGTTCTATTTGCTTAGAGGAATTTGAAGATGGAGAAATTGGTAGGATACTTCCAAATTGTGATCATTTCTTTCATGTGGTTTGCATAGACCAATGGCTACACTTGCATGGATCTTGCCCATTTTGTAGGAAATTTTGTATTTAA

Coding sequence (CDS)

ATGCAATTCTTCAAACTCTTTGACATGTTCCTGATTTCTTGTTCTGAGTTTACCATGCTGGTTCTTGAGTTTAAGGAGCAGCTTTTTTTCCATAAACCTCTTCGCTTCCTCACCGAAGCTTTGAAGATGATCACCTTCGCTTTGTTCCTCTCTCTTCTCGCTCTAGTTGGTGCGTCTGTGGGAACTGTGATCGGAGCCTTCAAAGGGCATGGCACGGGGATAGGCGCTATTGCCGGCGCGGCCGTAGCCCTTCAGATATTCAGCTCCAGTGCATCCGGGCATAGATATTGTTTATCAAGGGAAGCAATAATGGAGAGGCTGATGGATGGGAAGGGGTTGATGAACTGGGCAAGCAACTTCTCTGAGTATATGTATCGAGAGATATCGGAGTTTGTCGACGTTGCCGGAGAAAGTTGTGTAGAAGGGTTGTCGATGGAGAGTGTCCAAATGTTACCTGTTTGTGAATATGATCACACCACTGTCAACTCAATTTCTTGTTCTATTTGCTTAGAGGAATTTGAAGATGGAGAAATTGGTAGGATACTTCCAAATTGTGATCATTTCTTTCATGTGGTTTGCATAGACCAATGGCTACACTTGCATGGATCTTGCCCATTTTGTAGGAAATTTTGTATTTAA

Protein sequence

MQFFKLFDMFLISCSEFTMLVLEFKEQLFFHKPLRFLTEALKMITFALFLSLLALVGASVGTVIGAFKGHGTGIGAIAGAAVALQIFSSSASGHRYCLSREAIMERLMDGKGLMNWASNFSEYMYREISEFVDVAGESCVEGLSMESVQMLPVCEYDHTTVNSISCSICLEEFEDGEIGRILPNCDHFFHVVCIDQWLHLHGSCPFCRKFCI*

Homology

[Close]

BLAST of Csa7G209550 vs. Swiss-Prot
Match: NIPL1_ARATH (NEP1-interacting protein-like 1 OS=Arabidopsis thaliana GN=ATL27 PE=2 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 1.8e-20
Identity = 57/186 (30.65%), Postives = 91/186 (48.92%), Query Frame = 1


Query: 47  ALFLSLLALVGASVGTVIGAFKGH--------GTGIGAIAGAAVALQIFSSS-------A 106
           ALF    ALVG  +G + GA  G         G  +GAI+GA  ++++F SS        
Sbjct: 34  ALFTFFFALVGTLLGALTGALIGQETESGFIRGAAVGAISGAVFSIEVFESSLLLWQSDE 93

Query: 107 SGHRYCLSREAIMERLMDGK--------GLMNWASNFSEYMYREISEFVDVAGESCVEGL 166
           SG    L    ++  L+ G+         +++   +    +  +  +  D+   +  +GL
Sbjct: 94  SGIGCLLYLIDVIASLLSGRLVRERIGPAMLSAVQSQMGAVESQFQDHTDIFDTAISKGL 153

Query: 167 SMESVQMLPVCEYDHTTVNSISCSICLEEFEDGEIGRILPNCDHFFHVVCIDQWLHLHGS 210
           + +S+  +P      T+   +SCS+CL++F+ GE  R LP+C H FH+ CID+WL  H S
Sbjct: 154 TGDSLNRIPKVRITDTSPEIVSCSVCLQDFQVGETVRSLPHCHHMFHLPCIDKWLRRHAS 213

[Close]

BLAST of Csa7G209550 vs. Swiss-Prot
Match: NIPL2_ARATH (NEP1-interacting protein-like 2 OS=Arabidopsis thaliana GN=ATL24 PE=1 SV=2)

HSP 1 Score: 100.9 bits (250), Expect = 1.8e-20
Identity = 65/186 (34.95%), Postives = 92/186 (49.46%), Query Frame = 1


Query: 52  LLALVGASVGTVIGAFKGH--------GTGIGAIAGAAVALQIFSSSA-------SGHRY 111
           + A+ GA  G V GA  G         G  +GA+AGA +++++  +S        SG R 
Sbjct: 37  IFAMAGAFTGAVTGAVAGRAAQYGVLRGAALGAVAGAILSVEVLEASRAYWYLELSGSRG 96

Query: 112 CLSREAIMERLMDGK----GLMN-------WASNFSEYMYREISEFVDVAGESCVEGLSM 171
             S    +E+L  G+     LM+       W    S+  Y E     DV GE    GLS 
Sbjct: 97  PSSMADFVEQLFRGRLVDEQLMSTMINSHHWQLRISDVSYEERE---DVYGELEARGLSG 156

Query: 172 ESVQMLP--VCEYDHTTVNSISCSICLEEFEDGEIGRILPNCDHFFHVVCIDQWLHLHGS 210
           +S++ LP  +   +        C+ICL++ + GEI R LP CDH FH+VC+D+WL  HGS
Sbjct: 157 DSLRKLPCYIMSSEMVRRQVTHCTICLQDIKTGEITRSLPKCDHTFHLVCVDKWLIRHGS 216

[Close]

BLAST of Csa7G209550 vs. Swiss-Prot
Match: NIP1_ARATH (NEP1-interacting protein 1 OS=Arabidopsis thaliana GN=NIP1 PE=1 SV=2)

HSP 1 Score: 92.8 bits (229), Expect = 4.8e-18
Identity = 59/201 (29.35%), Postives = 92/201 (45.77%), Query Frame = 1


Query: 37  LTEALKMITFALFLSLLALVGASVGTVIGAFKGH--------GTGIGAIAGAAVALQIFS 96
           L+  L  I  A+     ALVG  +G + GA  G         G  +GAI+GA  ++++F 
Sbjct: 34  LSAVLGTILSAVLTFFFALVGTLLGALTGALIGQETESGFIRGAAVGAISGAVFSIEVFE 93

Query: 97  SSASGHRYCLSREAIMERLMD---------------GKGLMNWASNFS---EYMYREISE 156
           SS    +   SR   +  L+D               G  +++   +     +  + E+S 
Sbjct: 94  SSLVLWKSNESRFGCLLYLIDVIVSLISGRLVRERIGPAMLSAVQSQMGAVDSTFEELSS 153

Query: 157 FVDVAGESCVEGLSMESVQMLPVCEYDHTTV--NSISCSICLEEFEDGEIGRILPNCDHF 210
             D  G   + G  ++ +  + +   ++     N  SCS+CL++F+ GE  R LP+C H 
Sbjct: 154 IFDTGGSKGLTGDLVDKIPKIKITGKNNLDASGNKDSCSVCLQDFQLGETVRSLPHCHHM 213

[Close]

BLAST of Csa7G209550 vs. Swiss-Prot
Match: NIP2_ARATH (NEP1-interacting protein 2 OS=Arabidopsis thaliana GN=NIP2 PE=1 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.4e-17
Identity = 62/203 (30.54%), Postives = 92/203 (45.32%), Query Frame = 1


Query: 36  FLTEA-LKMITFALFLSLLALVGASVGTVIGAFKGH--------GTGIGAIAGAAVALQI 95
           FL  A L  I  A+     ALVG  +G + GA  G         G  IGAI+GA  ++++
Sbjct: 37  FLVSAVLGTIISAILTFFFALVGTLLGALTGALIGQETESGFIRGAAIGAISGAVFSIEV 96

Query: 96  FSSSA-------SGHRYCLSREAIMERLMDGK-----------GLMNWASNFSEYMYREI 155
           F SS        SG    L    ++  L+ G+             +       +  + + 
Sbjct: 97  FESSLDLWKSDESGFGCFLYLIDVIVSLLSGRLVRERIGPAMLSAVQSQMGAVDTAFDDH 156

Query: 156 SEFVDVAGESCVEGLSMESVQMLPVCEYDHTTV--NSISCSICLEEFEDGEIGRILPNCD 210
           +   D  G   + G  +E +  + +   ++T    N+ SCS+CL++F+ GE  R LP+C 
Sbjct: 157 TSLFDTGGSKGLTGDLVEKIPKMTITGNNNTDASENTDSCSVCLQDFQLGETVRSLPHCH 216

[Close]

BLAST of Csa7G209550 vs. Swiss-Prot
Match: ATL2_ARATH (RING-H2 finger protein ATL2 OS=Arabidopsis thaliana GN=ATL2 PE=2 SV=2)

HSP 1 Score: 84.3 bits (207), Expect = 1.7e-15
Identity = 35/68 (51.47%), Postives = 42/68 (61.76%), Query Frame = 1


Query: 142 GLSMESVQMLPVCEY-DHTTVNSISCSICLEEFEDGEIGRILPNCDHFFHVVCIDQWLHL 201
           GL    ++ LPV  + D T  + I C++CL EFE+ E GR+LPNC H FHV CID W H 
Sbjct: 94  GLDPNVIKSLPVFTFSDETHKDPIECAVCLSEFEESETGRVLPNCQHTFHVDCIDMWFHS 153

Query: 202 HGSCPFCR 209
           H +CP CR
Sbjct: 154 HSTCPLCR 161

[Close]

BLAST of Csa7G209550 vs. TrEMBL
Match: A0A0A0K5D1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G209550 PE=4 SV=1)

HSP 1 Score: 436.0 bits (1120), Expect = 2.6e-119
Identity = 212/212 (100.00%), Postives = 212/212 (100.00%), Query Frame = 1


Query: 1   MQFFKLFDMFLISCSEFTMLVLEFKEQLFFHKPLRFLTEALKMITFALFLSLLALVGASV 60
           MQFFKLFDMFLISCSEFTMLVLEFKEQLFFHKPLRFLTEALKMITFALFLSLLALVGASV
Sbjct: 1   MQFFKLFDMFLISCSEFTMLVLEFKEQLFFHKPLRFLTEALKMITFALFLSLLALVGASV 60

Query: 61  GTVIGAFKGHGTGIGAIAGAAVALQIFSSSASGHRYCLSREAIMERLMDGKGLMNWASNF 120
           GTVIGAFKGHGTGIGAIAGAAVALQIFSSSASGHRYCLSREAIMERLMDGKGLMNWASNF
Sbjct: 61  GTVIGAFKGHGTGIGAIAGAAVALQIFSSSASGHRYCLSREAIMERLMDGKGLMNWASNF 120

Query: 121 SEYMYREISEFVDVAGESCVEGLSMESVQMLPVCEYDHTTVNSISCSICLEEFEDGEIGR 180
           SEYMYREISEFVDVAGESCVEGLSMESVQMLPVCEYDHTTVNSISCSICLEEFEDGEIGR
Sbjct: 121 SEYMYREISEFVDVAGESCVEGLSMESVQMLPVCEYDHTTVNSISCSICLEEFEDGEIGR 180

Query: 181 ILPNCDHFFHVVCIDQWLHLHGSCPFCRKFCI 213
           ILPNCDHFFHVVCIDQWLHLHGSCPFCRKFCI
Sbjct: 181 ILPNCDHFFHVVCIDQWLHLHGSCPFCRKFCI 212

[Close]

BLAST of Csa7G209550 vs. TrEMBL
Match: A0A067F9B8_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g024603mg PE=4 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 7.4e-34
Identity = 83/185 (44.86%), Postives = 110/185 (59.46%), Query Frame = 1


Query: 37  LTEALKMITFALFLSLLALVGASVGTVIGAFKG--------HGTGIGAIAGAAVALQIFS 96
           L  A+K + +A    + AL GA VGT+ GA KG        HG GIGA+AGA  ALQ+  
Sbjct: 36  LIRAMKRVLYAALTCIFALGGAIVGTIFGAMKGQTTETGFLHGAGIGAVAGAITALQLLE 95

Query: 97  SSASGHRYCLSREAIMERLMDGKGLMNWASNFSEYMYREISEFVDVAGESCVEGLSMESV 156
           S+A G    LS+ A++  L++GK  M W S   E  YRE+S+  DV G   V+GLS + +
Sbjct: 96  SAADGES--LSKAALLSSLVNGKVFMEWVSTL-ETAYREVSDVYDVTG---VKGLSEDMI 155

Query: 157 QMLPVCEYDHTTV----NSISCSICLEEFEDGEIGRILPNCDHFFHVVCIDQWLHLHGSC 210
           Q LP C      +    N I CSICLE+FE+G+  R LP+C H FH  C+D+WL  +GSC
Sbjct: 156 QKLPECALHSEELIQLDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSC 214

[Close]

BLAST of Csa7G209550 vs. TrEMBL
Match: V4TYA4_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10009352mg PE=4 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 7.4e-34
Identity = 83/185 (44.86%), Postives = 110/185 (59.46%), Query Frame = 1


Query: 37  LTEALKMITFALFLSLLALVGASVGTVIGAFKG--------HGTGIGAIAGAAVALQIFS 96
           L  A+K + +A    + AL GA VGT+ GA KG        HG GIGA+AGA  ALQ+  
Sbjct: 36  LIRAMKRVLYAALTCIFALGGAIVGTIFGAMKGQTTETGFLHGAGIGAVAGAITALQLLE 95

Query: 97  SSASGHRYCLSREAIMERLMDGKGLMNWASNFSEYMYREISEFVDVAGESCVEGLSMESV 156
           S+A G    LS+ A++  L++GK  M W S   E  YRE+S+  DV G   V+GLS + +
Sbjct: 96  SAADGES--LSKAALLSSLVNGKVFMEWVSTL-ETAYREVSDVYDVTG---VKGLSEDMI 155

Query: 157 QMLPVCEYDHTTV----NSISCSICLEEFEDGEIGRILPNCDHFFHVVCIDQWLHLHGSC 210
           Q LP C      +    N I CSICLE+FE+G+  R LP+C H FH  C+D+WL  +GSC
Sbjct: 156 QKLPECALHSEELIQLDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSC 214

[Close]

BLAST of Csa7G209550 vs. TrEMBL
Match: V4UHG6_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10009352mg PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 2.4e-32
Identity = 83/196 (42.35%), Postives = 111/196 (56.63%), Query Frame = 1


Query: 37  LTEALKMITFALFLSLLALVGASVGTVIGAFKG--------HGTGIGAIAGAAVALQIFS 96
           L  A+K + +A    + AL GA VGT+ GA KG        HG GIGA+AGA  ALQ+  
Sbjct: 36  LIRAMKRVLYAALTCIFALGGAIVGTIFGAMKGQTTETGFLHGAGIGAVAGAITALQLLE 95

Query: 97  SSASGHRYCLSREAIMERLMDGKGLMNWAS-----------NFSEYMYREISEFVDVAGE 156
           S+A G    LS+ A++  L++GK  M W S           +  E  YRE+S+  DV G 
Sbjct: 96  SAADGES--LSKAALLSSLVNGKVFMEWVSPAVLKAYQWQVSTLETAYREVSDVYDVTG- 155

Query: 157 SCVEGLSMESVQMLPVCEYDHTTV----NSISCSICLEEFEDGEIGRILPNCDHFFHVVC 210
             V+GLS + +Q LP C      +    N I CSICLE+FE+G+  R LP+C H FH  C
Sbjct: 156 --VKGLSEDMIQKLPECALHSEELIQLDNEIGCSICLEKFEEGDSARKLPSCGHCFHSEC 215

[Close]

BLAST of Csa7G209550 vs. TrEMBL
Match: A0A067FHR5_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g024603mg PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 2.4e-32
Identity = 83/196 (42.35%), Postives = 111/196 (56.63%), Query Frame = 1


Query: 37  LTEALKMITFALFLSLLALVGASVGTVIGAFKG--------HGTGIGAIAGAAVALQIFS 96
           L  A+K + +A    + AL GA VGT+ GA KG        HG GIGA+AGA  ALQ+  
Sbjct: 36  LIRAMKRVLYAALTCIFALGGAIVGTIFGAMKGQTTETGFLHGAGIGAVAGAITALQLLE 95

Query: 97  SSASGHRYCLSREAIMERLMDGKGLMNWAS-----------NFSEYMYREISEFVDVAGE 156
           S+A G    LS+ A++  L++GK  M W S           +  E  YRE+S+  DV G 
Sbjct: 96  SAADGES--LSKAALLSSLVNGKVFMEWVSPAVLKAYQWQVSTLETAYREVSDVYDVTG- 155

Query: 157 SCVEGLSMESVQMLPVCEYDHTTV----NSISCSICLEEFEDGEIGRILPNCDHFFHVVC 210
             V+GLS + +Q LP C      +    N I CSICLE+FE+G+  R LP+C H FH  C
Sbjct: 156 --VKGLSEDMIQKLPECALHSEELIQLDNEIGCSICLEKFEEGDSARKLPSCGHCFHSEC 215

[Close]

BLAST of Csa7G209550 vs. TAIR10
Match: AT3G20395.1 (AT3G20395.1 RING/U-box superfamily protein)

HSP 1 Score: 102.8 bits (255), Expect = 2.6e-22
Identity = 61/191 (31.94%), Postives = 91/191 (47.64%), Query Frame = 1


Query: 37  LTEALKMITFALFLSLLALVGASVGTVIGAFKGHGTGIG--------AIAGAAVALQIFS 96
           ++  +K      F+ +LA     V  ++GA +GH T IG         +AG   A+Q+F 
Sbjct: 26  MSRTIKRALLGSFIFILASASVVVAAIVGAIEGHTTDIGFLQGSVLGVVAGVITAVQLFG 85

Query: 97  SSASGHRYCLSREAIMERLMDGKGLMN-----------WASNFSEYMYREISEFVDVAGE 156
                 +  LS+ A++ R+++GK +M            W     +  Y E S   D   E
Sbjct: 86  PVLHSDQP-LSKVALLRRVVNGKAIMGLVRPFVLKAYQWQIIALDTSYMESSNLYDFNHE 145

Query: 157 SCVEGLSMESVQMLPVCEYDHTTVNSISCSICLEEFEDGEIGRILPNCDHFFHVVCIDQW 209
              +GLS  S+Q +P+           SCSICL+++E+GE+GR L  C H FH+ CID+W
Sbjct: 146 K--KGLSKSSIQNIPMFYNRSEHQTKSSCSICLQDWEEGEVGRKLARCGHTFHMNCIDEW 205

[Close]

BLAST of Csa7G209550 vs. TAIR10
Match: AT1G74410.1 (AT1G74410.1 RING/U-box superfamily protein)

HSP 1 Score: 100.9 bits (250), Expect = 9.9e-22
Identity = 65/186 (34.95%), Postives = 92/186 (49.46%), Query Frame = 1


Query: 52  LLALVGASVGTVIGAFKGH--------GTGIGAIAGAAVALQIFSSSA-------SGHRY 111
           + A+ GA  G V GA  G         G  +GA+AGA +++++  +S        SG R 
Sbjct: 37  IFAMAGAFTGAVTGAVAGRAAQYGVLRGAALGAVAGAILSVEVLEASRAYWYLELSGSRG 96

Query: 112 CLSREAIMERLMDGK----GLMN-------WASNFSEYMYREISEFVDVAGESCVEGLSM 171
             S    +E+L  G+     LM+       W    S+  Y E     DV GE    GLS 
Sbjct: 97  PSSMADFVEQLFRGRLVDEQLMSTMINSHHWQLRISDVSYEERE---DVYGELEARGLSG 156

Query: 172 ESVQMLP--VCEYDHTTVNSISCSICLEEFEDGEIGRILPNCDHFFHVVCIDQWLHLHGS 210
           +S++ LP  +   +        C+ICL++ + GEI R LP CDH FH+VC+D+WL  HGS
Sbjct: 157 DSLRKLPCYIMSSEMVRRQVTHCTICLQDIKTGEITRSLPKCDHTFHLVCVDKWLIRHGS 216

[Close]

BLAST of Csa7G209550 vs. TAIR10
Match: AT4G35840.1 (AT4G35840.1 RING/U-box superfamily protein)

HSP 1 Score: 92.8 bits (229), Expect = 2.7e-19
Identity = 59/201 (29.35%), Postives = 92/201 (45.77%), Query Frame = 1


Query: 37  LTEALKMITFALFLSLLALVGASVGTVIGAFKGH--------GTGIGAIAGAAVALQIFS 96
           L+  L  I  A+     ALVG  +G + GA  G         G  +GAI+GA  ++++F 
Sbjct: 34  LSAVLGTILSAVLTFFFALVGTLLGALTGALIGQETESGFIRGAAVGAISGAVFSIEVFE 93

Query: 97  SSASGHRYCLSREAIMERLMD---------------GKGLMNWASNFS---EYMYREISE 156
           SS    +   SR   +  L+D               G  +++   +     +  + E+S 
Sbjct: 94  SSLVLWKSNESRFGCLLYLIDVIVSLISGRLVRERIGPAMLSAVQSQMGAVDSTFEELSS 153

Query: 157 FVDVAGESCVEGLSMESVQMLPVCEYDHTTV--NSISCSICLEEFEDGEIGRILPNCDHF 210
             D  G   + G  ++ +  + +   ++     N  SCS+CL++F+ GE  R LP+C H 
Sbjct: 154 IFDTGGSKGLTGDLVDKIPKIKITGKNNLDASGNKDSCSVCLQDFQLGETVRSLPHCHHM 213

[Close]

BLAST of Csa7G209550 vs. TAIR10
Match: AT3G16720.1 (AT3G16720.1 TOXICOS EN LEVADURA 2)

HSP 1 Score: 84.3 bits (207), Expect = 9.6e-17
Identity = 35/68 (51.47%), Postives = 42/68 (61.76%), Query Frame = 1


Query: 142 GLSMESVQMLPVCEY-DHTTVNSISCSICLEEFEDGEIGRILPNCDHFFHVVCIDQWLHL 201
           GL    ++ LPV  + D T  + I C++CL EFE+ E GR+LPNC H FHV CID W H 
Sbjct: 94  GLDPNVIKSLPVFTFSDETHKDPIECAVCLSEFEESETGRVLPNCQHTFHVDCIDMWFHS 153

Query: 202 HGSCPFCR 209
           H +CP CR
Sbjct: 154 HSTCPLCR 161

[Close]

BLAST of Csa7G209550 vs. TAIR10
Match: AT4G15975.1 (AT4G15975.1 RING/U-box superfamily protein)

HSP 1 Score: 82.0 bits (201), Expect = 4.8e-16
Identity = 33/68 (48.53%), Postives = 44/68 (64.71%), Query Frame = 1


Query: 142 GLSMESVQMLPVCEYDH-TTVNSISCSICLEEFEDGEIGRILPNCDHFFHVVCIDQWLHL 201
           GL+   ++ LP+  +   T + ++ CS+CL EF+D E GR++PNC H FHV CID W H 
Sbjct: 51  GLNPSIIKSLPIFTFSAVTALFAMECSVCLSEFKDNESGRVMPNCKHTFHVDCIDMWFHS 110

Query: 202 HGSCPFCR 209
           H SCP CR
Sbjct: 111 HSSCPLCR 118

[Close]

BLAST of Csa7G209550 vs. NCBI nr
Match: gi|700188926|gb|KGN44159.1| (hypothetical protein Csa_7G209550 [Cucumis sativus])

HSP 1 Score: 436.0 bits (1120), Expect = 3.7e-119
Identity = 212/212 (100.00%), Postives = 212/212 (100.00%), Query Frame = 1


Query: 1   MQFFKLFDMFLISCSEFTMLVLEFKEQLFFHKPLRFLTEALKMITFALFLSLLALVGASV 60
           MQFFKLFDMFLISCSEFTMLVLEFKEQLFFHKPLRFLTEALKMITFALFLSLLALVGASV
Sbjct: 1   MQFFKLFDMFLISCSEFTMLVLEFKEQLFFHKPLRFLTEALKMITFALFLSLLALVGASV 60

Query: 61  GTVIGAFKGHGTGIGAIAGAAVALQIFSSSASGHRYCLSREAIMERLMDGKGLMNWASNF 120
           GTVIGAFKGHGTGIGAIAGAAVALQIFSSSASGHRYCLSREAIMERLMDGKGLMNWASNF
Sbjct: 61  GTVIGAFKGHGTGIGAIAGAAVALQIFSSSASGHRYCLSREAIMERLMDGKGLMNWASNF 120

Query: 121 SEYMYREISEFVDVAGESCVEGLSMESVQMLPVCEYDHTTVNSISCSICLEEFEDGEIGR 180
           SEYMYREISEFVDVAGESCVEGLSMESVQMLPVCEYDHTTVNSISCSICLEEFEDGEIGR
Sbjct: 121 SEYMYREISEFVDVAGESCVEGLSMESVQMLPVCEYDHTTVNSISCSICLEEFEDGEIGR 180

Query: 181 ILPNCDHFFHVVCIDQWLHLHGSCPFCRKFCI 213
           ILPNCDHFFHVVCIDQWLHLHGSCPFCRKFCI
Sbjct: 181 ILPNCDHFFHVVCIDQWLHLHGSCPFCRKFCI 212

[Close]

BLAST of Csa7G209550 vs. NCBI nr
Match: gi|778725640|ref|XP_011658973.1| (PREDICTED: NEP1-interacting protein-like 1 [Cucumis sativus])

HSP 1 Score: 419.5 bits (1077), Expect = 3.6e-114
Identity = 204/204 (100.00%), Postives = 204/204 (100.00%), Query Frame = 1


Query: 9   MFLISCSEFTMLVLEFKEQLFFHKPLRFLTEALKMITFALFLSLLALVGASVGTVIGAFK 68
           MFLISCSEFTMLVLEFKEQLFFHKPLRFLTEALKMITFALFLSLLALVGASVGTVIGAFK
Sbjct: 1   MFLISCSEFTMLVLEFKEQLFFHKPLRFLTEALKMITFALFLSLLALVGASVGTVIGAFK 60

Query: 69  GHGTGIGAIAGAAVALQIFSSSASGHRYCLSREAIMERLMDGKGLMNWASNFSEYMYREI 128
           GHGTGIGAIAGAAVALQIFSSSASGHRYCLSREAIMERLMDGKGLMNWASNFSEYMYREI
Sbjct: 61  GHGTGIGAIAGAAVALQIFSSSASGHRYCLSREAIMERLMDGKGLMNWASNFSEYMYREI 120

Query: 129 SEFVDVAGESCVEGLSMESVQMLPVCEYDHTTVNSISCSICLEEFEDGEIGRILPNCDHF 188
           SEFVDVAGESCVEGLSMESVQMLPVCEYDHTTVNSISCSICLEEFEDGEIGRILPNCDHF
Sbjct: 121 SEFVDVAGESCVEGLSMESVQMLPVCEYDHTTVNSISCSICLEEFEDGEIGRILPNCDHF 180

Query: 189 FHVVCIDQWLHLHGSCPFCRKFCI 213
           FHVVCIDQWLHLHGSCPFCRKFCI
Sbjct: 181 FHVVCIDQWLHLHGSCPFCRKFCI 204

[Close]

BLAST of Csa7G209550 vs. NCBI nr
Match: gi|659093829|ref|XP_008447740.1| (PREDICTED: NEP1-interacting protein-like 2 isoform X2 [Cucumis melo])

HSP 1 Score: 348.6 bits (893), Expect = 7.8e-93
Identity = 172/195 (88.21%), Postives = 177/195 (90.77%), Query Frame = 1


Query: 19  MLVLEFKEQLFFHKPLRFLTEALKMITFALFLSLLALVGASVGTVIGAFKGHGTGIGAIA 78
           MLV+EFKEQLFF K LRFL EALK I  AL LSLLALVGA VGTVIGAFKGHG  IGAIA
Sbjct: 1   MLVVEFKEQLFFDKALRFLAEALKTIALALLLSLLALVGACVGTVIGAFKGHGAAIGAIA 60

Query: 79  GAAVALQIFSSSASGHRY-CLSREAIMERLMDGKGLMNWASNFSEYMYREISEFVDVAGE 138
           GAAVALQI S +ASG RY CLSREAIME LMDGKGLMNWASNFSEYM+REISEFVDVAGE
Sbjct: 61  GAAVALQIVSCTASGQRYYCLSREAIMESLMDGKGLMNWASNFSEYMHREISEFVDVAGE 120

Query: 139 SCVEGLSMESVQMLPVCEYDHTTVNSISCSICLEEFEDGEIGRILPNCDHFFHVVCIDQW 198
           SC EGLSMESVQMLPVCEYDH+T+NSISCSICLEEFEDGEIGRILPNCDHFFHV CIDQW
Sbjct: 121 SCAEGLSMESVQMLPVCEYDHSTINSISCSICLEEFEDGEIGRILPNCDHFFHVGCIDQW 180

Query: 199 LHLHGSCPFCRKFCI 213
           LHLHGSCP CRKFCI
Sbjct: 181 LHLHGSCPICRKFCI 195

[Close]

BLAST of Csa7G209550 vs. NCBI nr
Match: gi|659093827|ref|XP_008447739.1| (PREDICTED: NEP1-interacting protein-like 2 isoform X1 [Cucumis melo])

HSP 1 Score: 343.6 bits (880), Expect = 2.5e-91
Identity = 172/197 (87.31%), Postives = 177/197 (89.85%), Query Frame = 1


Query: 19  MLVLEFKEQLFFHKPLRFLTEALKMITFALFLSLLALVGASVGTVIGAFKGHGTGIGAIA 78
           MLV+EFKEQLFF K LRFL EALK I  AL LSLLALVGA VGTVIGAFKGHG  IGAIA
Sbjct: 1   MLVVEFKEQLFFDKALRFLAEALKTIALALLLSLLALVGACVGTVIGAFKGHGAAIGAIA 60

Query: 79  GAAVALQIFSSSASGHRY-CLSR--EAIMERLMDGKGLMNWASNFSEYMYREISEFVDVA 138
           GAAVALQI S +ASG RY CLSR  EAIME LMDGKGLMNWASNFSEYM+REISEFVDVA
Sbjct: 61  GAAVALQIVSCTASGQRYYCLSRWQEAIMESLMDGKGLMNWASNFSEYMHREISEFVDVA 120

Query: 139 GESCVEGLSMESVQMLPVCEYDHTTVNSISCSICLEEFEDGEIGRILPNCDHFFHVVCID 198
           GESC EGLSMESVQMLPVCEYDH+T+NSISCSICLEEFEDGEIGRILPNCDHFFHV CID
Sbjct: 121 GESCAEGLSMESVQMLPVCEYDHSTINSISCSICLEEFEDGEIGRILPNCDHFFHVGCID 180

Query: 199 QWLHLHGSCPFCRKFCI 213
           QWLHLHGSCP CRKFCI
Sbjct: 181 QWLHLHGSCPICRKFCI 197

[Close]

BLAST of Csa7G209550 vs. NCBI nr
Match: gi|567920674|ref|XP_006452343.1| (hypothetical protein CICLE_v10009352mg [Citrus clementina])

HSP 1 Score: 152.1 bits (383), Expect = 1.1e-33
Identity = 83/185 (44.86%), Postives = 110/185 (59.46%), Query Frame = 1


Query: 37  LTEALKMITFALFLSLLALVGASVGTVIGAFKG--------HGTGIGAIAGAAVALQIFS 96
           L  A+K + +A    + AL GA VGT+ GA KG        HG GIGA+AGA  ALQ+  
Sbjct: 36  LIRAMKRVLYAALTCIFALGGAIVGTIFGAMKGQTTETGFLHGAGIGAVAGAITALQLLE 95

Query: 97  SSASGHRYCLSREAIMERLMDGKGLMNWASNFSEYMYREISEFVDVAGESCVEGLSMESV 156
           S+A G    LS+ A++  L++GK  M W S   E  YRE+S+  DV G   V+GLS + +
Sbjct: 96  SAADGES--LSKAALLSSLVNGKVFMEWVSTL-ETAYREVSDVYDVTG---VKGLSEDMI 155

Query: 157 QMLPVCEYDHTTV----NSISCSICLEEFEDGEIGRILPNCDHFFHVVCIDQWLHLHGSC 210
           Q LP C      +    N I CSICLE+FE+G+  R LP+C H FH  C+D+WL  +GSC
Sbjct: 156 QKLPECALHSEELIQLDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSC 214

The following BLAST results are available for this feature:

BLAST of Csa7G209550 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NIPL1_ARATH	1.8e-20	30.65	NEP1-interacting protein-like 1 OS=Arabidopsis thaliana GN=ATL27 PE=2 SV=1	[more]
NIPL2_ARATH	1.8e-20	34.95	NEP1-interacting protein-like 2 OS=Arabidopsis thaliana GN=ATL24 PE=1 SV=2	[more]
NIP1_ARATH	4.8e-18	29.35	NEP1-interacting protein 1 OS=Arabidopsis thaliana GN=NIP1 PE=1 SV=2	[more]
NIP2_ARATH	1.4e-17	30.54	NEP1-interacting protein 2 OS=Arabidopsis thaliana GN=NIP2 PE=1 SV=1	[more]
ATL2_ARATH	1.7e-15	51.47	RING-H2 finger protein ATL2 OS=Arabidopsis thaliana GN=ATL2 PE=2 SV=2	[more]

BLAST of Csa7G209550 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K5D1_CUCSA	2.6e-119	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G209550 PE=4 SV=1	[more]
A0A067F9B8_CITSI	7.4e-34	44.86	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g024603mg PE=4 SV=1	[more]
V4TYA4_9ROSI	7.4e-34	44.86	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10009352mg PE=4 SV=1	[more]
V4UHG6_9ROSI	2.4e-32	42.35	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10009352mg PE=4 SV=1	[more]
A0A067FHR5_CITSI	2.4e-32	42.35	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g024603mg PE=4 SV=1	[more]

BLAST of Csa7G209550 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G20395.1	2.6e-22	31.94	RING/U-box superfamily protein	[more]
AT1G74410.1	9.9e-22	34.95	RING/U-box superfamily protein	[more]
AT4G35840.1	2.7e-19	29.35	RING/U-box superfamily protein	[more]
AT3G16720.1	9.6e-17	51.47	TOXICOS EN LEVADURA 2	[more]
AT4G15975.1	4.8e-16	48.53	RING/U-box superfamily protein	[more]

BLAST of Csa7G209550 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700188926\|gb\|KGN44159.1\|	3.7e-119	100.00	hypothetical protein Csa_7G209550 [Cucumis sativus]	[more]
gi\|778725640\|ref\|XP_011658973.1\|	3.6e-114	100.00	PREDICTED: NEP1-interacting protein-like 1 [Cucumis sativus]	[more]
gi\|659093829\|ref\|XP_008447740.1\|	7.8e-93	88.21	PREDICTED: NEP1-interacting protein-like 2 isoform X2 [Cucumis melo]	[more]
gi\|659093827\|ref\|XP_008447739.1\|	2.5e-91	87.31	PREDICTED: NEP1-interacting protein-like 2 isoform X1 [Cucumis melo]	[more]
gi\|567920674\|ref\|XP_006452343.1\|	1.1e-33	44.86	hypothetical protein CICLE_v10009352mg [Citrus clementina]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001841	Znf_RING
IPR013083	Znf_RING/FYVE/PHD

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding
GO:0008270	zinc ion binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa7G209550.1	Csa7G209550.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 165..208 score: 1.4
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 166..207 score: 3.
IPR001841	Zinc finger, RING-type	PROFILE	PS50089	ZF_RING_2	coord: 166..208 score: 12
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 164..209 score: 1.8
None	No IPR available	PANTHER	PTHR14155	RING FINGER DOMAIN-CONTAINING	coord: 142..208 score: 2.6
None	No IPR available	unknown	SSF57850	RING/U-box	coord: 152..211 score: 1.13

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa7G209550	MELO3C028997.2	Melon (DHL92) v3.6.1	cumedB513
Csa7G209550	Cla97C09G173540	Watermelon (97103) v2	cuwmbB562
Csa7G209550	Bhi09G001376	Wax gourd	cuwgoB692
Csa7G209550	CSPI07G09760	Wild cucumber (PI 183967)	cpicuB354
Csa7G209550	Cucsa.007210	Cucumber (Gy14) v1	cgycuB127
Csa7G209550	Cp4.1LG06g08890	Cucurbita pepo (Zucchini)	cpecuB799
Csa7G209550	Cp4.1LG02g01060	Cucurbita pepo (Zucchini)	cpecuB587
Csa7G209550	CsGy7G009270	Cucumber (Gy14) v2	cgybcuB323
Csa7G209550	Carg12822	Silver-seed gourd	carcuB0922

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa7G209550	Cucurbita maxima (Rimu)	cmacuB040
Csa7G209550	Cucurbita maxima (Rimu)	cmacuB499
Csa7G209550	Cucurbita moschata (Rifu)	cmocuB028
Csa7G209550	Cucurbita moschata (Rifu)	cmocuB487
Csa7G209550	Melon (DHL92) v3.5.1	cumeB534
Csa7G209550	Watermelon (Charleston Gray)	cuwcgB518
Csa7G209550	Watermelon (97103) v1	cuwmB555
Csa7G209550	Bottle gourd (USVL1VR-Ls)	culsiB510