Csa7G201840 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa7G201840
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr7 : 7213518 .. 7213825 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGCGGGGAATGAGCCTCTCGCACCGTCCTCCTACTCCTCGTTAGTTCTTAATGTGACTACGACGACTCTCACGGCTGGCTCATGCATGTTTGTAACTCTTCGCTAGTTCACTTGGCCTCTGATCATAGCAACCTCCAATCCTCCTCCACTTCATCTTCATCAACATCTTCATCTCTATTTCCGACAACGATTTTGATCAAACCCACCGACCCTGTGGGGAAAGGTTACCACTACAAGATGAATTTCAGCAACAAACAAAGGCAGATGAGTGACATGCCATATCGCCATATCCACTCCATTTAA

mRNA sequence

ATGGATGCGGGGAATGAGCCTCTCGCACCGTCCTCCTACTCCTCGTTAGTTCTTAATGTGACTACGACGACTCTCACGGCTGGCTCATGCATCAACCTCCAATCCTCCTCCACTTCATCTTCATCAACATCTTCATCTCTATTTCCGACAACGATTTTGATCAAACCCACCGACCCTGTGGGGAAAGGTTACCACTACAAGATGAATTTCAGCAACAAACAAAGGCAGATGAGTGACATGCCATATCGCCATATCCACTCCATTTAA

Coding sequence (CDS)

ATGGATGCGGGGAATGAGCCTCTCGCACCGTCCTCCTACTCCTCGTTAGTTCTTAATGTGACTACGACGACTCTCACGGCTGGCTCATGCATCAACCTCCAATCCTCCTCCACTTCATCTTCATCAACATCTTCATCTCTATTTCCGACAACGATTTTGATCAAACCCACCGACCCTGTGGGGAAAGGTTACCACTACAAGATGAATTTCAGCAACAAACAAAGGCAGATGAGTGACATGCCATATCGCCATATCCACTCCATTTAA

Protein sequence

MDAGNEPLAPSSYSSLVLNVTTTTLTAGSCINLQSSSTSSSSTSSSLFPTTILIKPTDPVGKGYHYKMNFSNKQRQMSDMPYRHIHSI*

Homology

[Close]

BLAST of Csa7G201840 vs. TrEMBL
Match: A0A0A0K748_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G201840 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 4.0e-42
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 1


Query: 1  MDAGNEPLAPSSYSSLVLNVTTTTLTAGSCINLQSSSTSSSSTSSSLFPTTILIKPTDPV 60
          MDAGNEPLAPSSYSSLVLNVTTTTLTAGSCINLQSSSTSSSSTSSSLFPTTILIKPTDPV
Sbjct: 1  MDAGNEPLAPSSYSSLVLNVTTTTLTAGSCINLQSSSTSSSSTSSSLFPTTILIKPTDPV 60

Query: 61 GKGYHYKMNFSNKQRQMSDMPYRHIHSI 89
          GKGYHYKMNFSNKQRQMSDMPYRHIHSI
Sbjct: 61 GKGYHYKMNFSNKQRQMSDMPYRHIHSI 88

[Close]

BLAST of Csa7G201840 vs. NCBI nr
Match: gi|700188899|gb|KGN44132.1| (hypothetical protein Csa_7G201840 [Cucumis sativus])

HSP 1 Score: 178.3 bits (451), Expect = 5.8e-42
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 1


Query: 1  MDAGNEPLAPSSYSSLVLNVTTTTLTAGSCINLQSSSTSSSSTSSSLFPTTILIKPTDPV 60
          MDAGNEPLAPSSYSSLVLNVTTTTLTAGSCINLQSSSTSSSSTSSSLFPTTILIKPTDPV
Sbjct: 1  MDAGNEPLAPSSYSSLVLNVTTTTLTAGSCINLQSSSTSSSSTSSSLFPTTILIKPTDPV 60

Query: 61 GKGYHYKMNFSNKQRQMSDMPYRHIHSI 89
          GKGYHYKMNFSNKQRQMSDMPYRHIHSI
Sbjct: 61 GKGYHYKMNFSNKQRQMSDMPYRHIHSI 88

The following BLAST results are available for this feature:

BLAST of Csa7G201840 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K748_CUCSA	4.0e-42	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G201840 PE=4 SV=1	[more]

BLAST of Csa7G201840 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700188899\|gb\|KGN44132.1\|	5.8e-42	100.00	hypothetical protein Csa_7G201840 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa7G201840.1	Csa7G201840.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa7G201840	CSPI07G09500	Wild cucumber (PI 183967)	cpicuB354

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa7G201840	Cucumber (Gy14) v1	cgycuB334
Csa7G201840	Melon (DHL92) v3.5.1	cumeB534
Csa7G201840	Cucumber (Gy14) v2	cgybcuB323
Csa7G201840	Melon (DHL92) v3.6.1	cumedB513