Csa7G089220 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa7G089220
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	DUF185-domain-containing protein
Location	Chr7 : 5472859 .. 5473643 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTACATAATGTTGAATGCACCTACAAGAGTTTACAAGACTATGACTTATACGTATGTGGTTTTTGCTGCATTTTTTCTCTACCATGAAATGATAAATATCTTCTGCTGCTTGCACCAAGCTGAGATATCTTTCTAGCTTTTAGGCTGAATTACTTAATGCTTATCACATCTACCTTGTGCTCTTAATATAACCAAGGAGGAAGGAACAACTTCCAACAATTTTCTATTTGCGAAAGCCTGAAAGGGGGTTAGTTTTTAAAGAGGGAATTTTATAGACTTCTTAGTTTTCCTGTAAAAATCCTCCACAATATGTATACGATCATATATTTTATAATGCAATTTTCTTAATGAATACTTTGACTAGTGAATAAATTATTCGGATATCATAAGATACATCACAAGGAAAAGAATTTTATGTTCTGTTTGTATCTTAAAAATATATAAGAATAGTTTTCAAGGTCTTCTATTCTTGAATTATGAACAATAATTTCACTGGTACTCGTCAAATAACATAAACCTACACATCGATTTCTATATAAGAAATTATTGAAAAATTCACAATTTCCTAATTCCTCTTGTTTCAATATTCGGTCCTCACGTTTCATGTGAAAATTACATATATATGATTGTAGCTCAGTGGAAATAAGTTCATCTTTAGCAGAGATACAGAGACAAACTGTTGGAGAGGTTCGTAGTCACCAATTAAAATTTAAAGTAGAGTGTCGTGATGCTATTGACTTGAGTGGATATGGTATGTTTTCGTTTTTTTCCCTAAACTAA

mRNA sequence

ATGGATTACATAATGTTGAATGCACCTACAAGAGTTTACAAGACTATGACTTATACCTCAGTGGAAATAAGTTCATCTTTAGCAGAGATACAGAGACAAACTGTTGGAGAGGTTCGTAGTCACCAATTAAAATTTAAAGTAGAGTGTCGTGATGCTATTGACTTGAGTGGATATGGTATGTTTTCGTTTTTTTCCCTAAACTAA

Coding sequence (CDS)

ATGGATTACATAATGTTGAATGCACCTACAAGAGTTTACAAGACTATGACTTATACCTCAGTGGAAATAAGTTCATCTTTAGCAGAGATACAGAGACAAACTGTTGGAGAGGTTCGTAGTCACCAATTAAAATTTAAAGTAGAGTGTCGTGATGCTATTGACTTGAGTGGATATGGTATGTTTTCGTTTTTTTCCCTAAACTAA

Protein sequence

MDYIMLNAPTRVYKTMTYTSVEISSSLAEIQRQTVGEVRSHQLKFKVECRDAIDLSGYGMFSFFSLN*

Homology

[Close]

BLAST of Csa7G089220 vs. TrEMBL
Match: A0A0A0K8B0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G089220 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 3.0e-29
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 1


Query: 1  MDYIMLNAPTRVYKTMTYTSVEISSSLAEIQRQTVGEVRSHQLKFKVECRDAIDLSGYGM 60
          MDYIMLNAPTRVYKTMTYTSVEISSSLAEIQRQTVGEVRSHQLKFKVECRDAIDLSGYGM
Sbjct: 1  MDYIMLNAPTRVYKTMTYTSVEISSSLAEIQRQTVGEVRSHQLKFKVECRDAIDLSGYGM 60

Query: 61 FSFFSLN 68
          FSFFSLN
Sbjct: 61 FSFFSLN 67

[Close]

BLAST of Csa7G089220 vs. TrEMBL
Match: A0A0A0LZS9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G615180 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 3.6e-22
Identity = 54/59 (91.53%), Postives = 57/59 (96.61%), Query Frame = 1


Query: 1   MDYIMLNAPTRVYKTMTYTSVEISSSLAEIQRQTVGEVRSHQLKFKVECRDAIDLSGYG 60
           MDYIMLNAPTRVYKTMTYTSVEIS SLAEIQRQTVG+VRSHQ KFKVECRDA+DLSG+G
Sbjct: 149 MDYIMLNAPTRVYKTMTYTSVEISPSLAEIQRQTVGDVRSHQSKFKVECRDAVDLSGWG 207

[Close]

BLAST of Csa7G089220 vs. TrEMBL
Match: B9RWI6_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1019820 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 1.8e-18
Identity = 48/59 (81.36%), Postives = 53/59 (89.83%), Query Frame = 1


Query: 1   MDYIMLNAPTRVYKTMTYTSVEISSSLAEIQRQTVGEVRSHQLKFKVECRDAIDLSGYG 60
           MDYIMLNAP+RVY TMTYTSVEIS SLAEIQ++TVGEVRSH  KF+VECRDA D SG+G
Sbjct: 148 MDYIMLNAPSRVYNTMTYTSVEISPSLAEIQKETVGEVRSHLSKFRVECRDAADRSGWG 206

[Close]

BLAST of Csa7G089220 vs. TrEMBL
Match: A0A067L5I6_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01131 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 9.1e-18
Identity = 46/59 (77.97%), Postives = 52/59 (88.14%), Query Frame = 1


Query: 1   MDYIMLNAPTRVYKTMTYTSVEISSSLAEIQRQTVGEVRSHQLKFKVECRDAIDLSGYG 60
           MDYIMLNAP RVY +MTYTSVEIS SLAEIQ++TVGE+RSH  KF+VECRDA D SG+G
Sbjct: 84  MDYIMLNAPARVYNSMTYTSVEISPSLAEIQKETVGEIRSHLSKFRVECRDAADRSGWG 142

[Close]

BLAST of Csa7G089220 vs. TrEMBL
Match: A0A151SB78_CAJCA (Protein midA isogeny OS=Cajanus cajan GN=KK1_026113 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 1.5e-17
Identity = 46/59 (77.97%), Postives = 52/59 (88.14%), Query Frame = 1


Query: 1  MDYIMLNAPTRVYKTMTYTSVEISSSLAEIQRQTVGEVRSHQLKFKVECRDAIDLSGYG 60
          MDYIMLNAP +VY +MTYTSVEIS SLAE+QR+TVGEVRSH  KF+VECRDA D SG+G
Sbjct: 27 MDYIMLNAPAKVYNSMTYTSVEISPSLAEVQRETVGEVRSHIPKFRVECRDAADRSGWG 85

[Close]

BLAST of Csa7G089220 vs. TAIR10
Match: AT1G04900.1 (AT1G04900.1 Protein of unknown function (DUF185))

HSP 1 Score: 85.9 bits (211), Expect = 1.1e-17
Identity = 39/58 (67.24%), Postives = 48/58 (82.76%), Query Frame = 1


Query: 1   MDYIMLNAPTRVYKTMTYTSVEISSSLAEIQRQTVGEVRSHQLKFKVECRDAIDLSGY 59
           +DYIMLNAP R+YK M+YTS+EIS SLA+IQ++TV +V SH  KF+VECRDA DL+G+
Sbjct: 146 LDYIMLNAPERIYKNMSYTSIEISPSLAKIQKETVAQVGSHLSKFRVECRDASDLAGW 203

[Close]

BLAST of Csa7G089220 vs. NCBI nr
Match: gi|700188768|gb|KGN44001.1| (hypothetical protein Csa_7G089220 [Cucumis sativus])

HSP 1 Score: 135.2 bits (339), Expect = 4.3e-29
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 1


Query: 1  MDYIMLNAPTRVYKTMTYTSVEISSSLAEIQRQTVGEVRSHQLKFKVECRDAIDLSGYGM 60
          MDYIMLNAPTRVYKTMTYTSVEISSSLAEIQRQTVGEVRSHQLKFKVECRDAIDLSGYGM
Sbjct: 1  MDYIMLNAPTRVYKTMTYTSVEISSSLAEIQRQTVGEVRSHQLKFKVECRDAIDLSGYGM 60

Query: 61 FSFFSLN 68
          FSFFSLN
Sbjct: 61 FSFFSLN 67

[Close]

BLAST of Csa7G089220 vs. NCBI nr
Match: gi|778663693|ref|XP_011660138.1| (PREDICTED: uncharacterized protein LOC101214232 [Cucumis sativus])

HSP 1 Score: 111.7 bits (278), Expect = 5.1e-22
Identity = 54/59 (91.53%), Postives = 57/59 (96.61%), Query Frame = 1


Query: 1   MDYIMLNAPTRVYKTMTYTSVEISSSLAEIQRQTVGEVRSHQLKFKVECRDAIDLSGYG 60
           MDYIMLNAPTRVYKTMTYTSVEIS SLAEIQRQTVG+VRSHQ KFKVECRDA+DLSG+G
Sbjct: 149 MDYIMLNAPTRVYKTMTYTSVEISPSLAEIQRQTVGDVRSHQSKFKVECRDAVDLSGWG 207

[Close]

BLAST of Csa7G089220 vs. NCBI nr
Match: gi|659099057|ref|XP_008450410.1| (PREDICTED: uncharacterized protein LOC103492021 [Cucumis melo])

HSP 1 Score: 109.0 bits (271), Expect = 3.3e-21
Identity = 53/59 (89.83%), Postives = 55/59 (93.22%), Query Frame = 1


Query: 1   MDYIMLNAPTRVYKTMTYTSVEISSSLAEIQRQTVGEVRSHQLKFKVECRDAIDLSGYG 60
           MDYIMLNAPTRVYK MTYTSVEIS SLAEIQRQTVGEVRSHQ KFKVECRDA+DL G+G
Sbjct: 177 MDYIMLNAPTRVYKNMTYTSVEISPSLAEIQRQTVGEVRSHQSKFKVECRDAVDLRGWG 235

[Close]

BLAST of Csa7G089220 vs. NCBI nr
Match: gi|255554130|ref|XP_002518105.1| (PREDICTED: NADH dehydrogenase [ubiquinone])

HSP 1 Score: 99.4 bits (246), Expect = 2.6e-18
Identity = 48/59 (81.36%), Postives = 53/59 (89.83%), Query Frame = 1


Query: 1   MDYIMLNAPTRVYKTMTYTSVEISSSLAEIQRQTVGEVRSHQLKFKVECRDAIDLSGYG 60
           MDYIMLNAP+RVY TMTYTSVEIS SLAEIQ++TVGEVRSH  KF+VECRDA D SG+G
Sbjct: 148 MDYIMLNAPSRVYNTMTYTSVEISPSLAEIQKETVGEVRSHLSKFRVECRDAADRSGWG 206

[Close]

BLAST of Csa7G089220 vs. NCBI nr
Match: gi|643732182|gb|KDP39374.1| (hypothetical protein JCGZ_01131 [Jatropha curcas])

HSP 1 Score: 97.1 bits (240), Expect = 1.3e-17
Identity = 46/59 (77.97%), Postives = 52/59 (88.14%), Query Frame = 1


Query: 1   MDYIMLNAPTRVYKTMTYTSVEISSSLAEIQRQTVGEVRSHQLKFKVECRDAIDLSGYG 60
           MDYIMLNAP RVY +MTYTSVEIS SLAEIQ++TVGE+RSH  KF+VECRDA D SG+G
Sbjct: 84  MDYIMLNAPARVYNSMTYTSVEISPSLAEIQKETVGEIRSHLSKFRVECRDAADRSGWG 142

The following BLAST results are available for this feature:

BLAST of Csa7G089220 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K8B0_CUCSA	3.0e-29	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G089220 PE=4 SV=1	[more]
A0A0A0LZS9_CUCSA	3.6e-22	91.53	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G615180 PE=4 SV=1	[more]
B9RWI6_RICCO	1.8e-18	81.36	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1019820 PE=4 SV=1	[more]
A0A067L5I6_JATCU	9.1e-18	77.97	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01131 PE=4 SV=1	[more]
A0A151SB78_CAJCA	1.5e-17	77.97	Protein midA isogeny OS=Cajanus cajan GN=KK1_026113 PE=4 SV=1	[more]

BLAST of Csa7G089220 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G04900.1	1.1e-17	67.24	Protein of unknown function (DUF185)	[more]

BLAST of Csa7G089220 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700188768\|gb\|KGN44001.1\|	4.3e-29	100.00	hypothetical protein Csa_7G089220 [Cucumis sativus]	[more]
gi\|778663693\|ref\|XP_011660138.1\|	5.1e-22	91.53	PREDICTED: uncharacterized protein LOC101214232 [Cucumis sativus]	[more]
gi\|659099057\|ref\|XP_008450410.1\|	3.3e-21	89.83	PREDICTED: uncharacterized protein LOC103492021 [Cucumis melo]	[more]
gi\|255554130\|ref\|XP_002518105.1\|	2.6e-18	81.36	PREDICTED: NADH dehydrogenase [ubiquinone]	[more]
gi\|643732182\|gb\|KDP39374.1\|	1.3e-17	77.97	hypothetical protein JCGZ_01131 [Jatropha curcas]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR003788	NDUFAF7

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032259	methylation
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0008168	methyltransferase activity

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU110748	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa7G089220.1	Csa7G089220.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU110748	CU110748	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003788	Putative S-adenosyl-L-methionine-dependent methyltransferase MidA	PANTHER	PTHR12049	UNCHARACTERIZED	coord: 1..54 score: 6.4
None	No IPR available	PANTHER	PTHR12049:SF5	NADH DEHYDROGENASE [UBIQUINONE] COMPLEX I, ASSEMBLY FACTOR 7 HOMOLOG	coord: 1..54 score: 6.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa7G089220	CsGy7G008700	Cucumber (Gy14) v2	cgybcuB325

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa7G089220	Silver-seed gourd	carcuB0898
Csa7G089220	Cucurbita maxima (Rimu)	cmacuB498
Csa7G089220	Watermelon (Charleston Gray)	cuwcgB538
Csa7G089220	Cucurbita pepo (Zucchini)	cpecuB586
Csa7G089220	Cucurbita pepo (Zucchini)	cpecuB798
Csa7G089220	Cucumber (Gy14) v2	cgybcuB324