Csa7G070240 (gene) Cucumber (Chinese Long) v2

NameCsa7G070240
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionPathogenesis related protein isoform b2 (Precursor); contains IPR014044 (CAP domain)
LocationChr7 : 4346494 .. 4346982 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGAAAATGGCACTCGCCACCACTCTCTCTGCCCTTTGCATCGTTGCACTAGCCCTAACCCCAATCGTCATTGCTCAAAACAGCCCTCAAGACTTCTTTGACGCGCACAATGCAGTGCGAGCCAAGGTCGGGGCTGAACCCCTCTTTTGGGACGAAGAACTTGAAGCTTACGCTAAAAATTATATCACGTCGAAGATTAAAACTTGTGAAATGGTGCACTTTGTTGGCCCTTATGGTGAGAACTTGGCAACAGCGAACCCCGTGTTAACCGCAGCAGCTTCAGTGAACACATGGGCAGCCGAGAAGAAGTACTATAACCATAACTCGAACAAATGTGAGGGAGGCGAGTGCCGACATTATAGACAGTTGGTGTGGAAGAATAGTTTTTTGGTGGGTTGTGCTACTGTTAAATGCAAGAACAATTGGTCTTTAGTCTCATGCAACTATAGTCCTTCTGGGAATGTTGTAGGTGAGCGACCTTATTAG

mRNA sequence

ATGTCGAAAATGGCACTCGCCACCACTCTCTCTGCCCTTTGCATCGTTGCACTAGCCCTAACCCCAATCGTCATTGCTCAAAACAGCCCTCAAGACTTCTTTGACGCGCACAATGCACTTACGCTAAAAATTATATCACGTCGAAGATTAAAACTTAATAGTTTTTTGGTGGGTTGTGCTACTGTTAAATGCAAGAACAATTGGTCTTTAGTCTCATGCAACTATAGTCCTTCTGGGAATGTTGTAGGTGAGCGACCTTATTAG

Coding sequence (CDS)

ATGTCGAAAATGGCACTCGCCACCACTCTCTCTGCCCTTTGCATCGTTGCACTAGCCCTAACCCCAATCGTCATTGCTCAAAACAGCCCTCAAGACTTCTTTGACGCGCACAATGCACTTACGCTAAAAATTATATCACGTCGAAGATTAAAACTTAATAGTTTTTTGGTGGGTTGTGCTACTGTTAAATGCAAGAACAATTGGTCTTTAGTCTCATGCAACTATAGTCCTTCTGGGAATGTTGTAGGTGAGCGACCTTATTAG

Protein sequence

MSKMALATTLSALCIVALALTPIVIAQNSPQDFFDAHNALTLKIISRRRLKLNSFLVGCATVKCKNNWSLVSCNYSPSGNVVGERPY*
BLAST of Csa7G070240 vs. Swiss-Prot
Match: PR1B_TOBAC (Pathogenesis-related protein 1B OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 1.7e-06
Identity = 22/35 (62.86%), Postives = 23/35 (65.71%), Query Frame = 1

Query: 53  NSFLVGCATVKCKNNWSLVSCNYSPSGNVVGERPY 88
           NS  VGCA VKC N   +VSCNY P GNV+G+ PY
Sbjct: 134 NSVRVGCARVKCNNGGYVVSCNYDPPGNVIGQSPY 168

BLAST of Csa7G070240 vs. Swiss-Prot
Match: PR04_SOLLC (Pathogenesis-related leaf protein 4 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 3.0e-06
Identity = 20/35 (57.14%), Postives = 21/35 (60.00%), Query Frame = 1

Query: 53  NSFLVGCATVKCKNNWSLVSCNYSPSGNVVGERPY 88
           NS  +GC   +C N W  +SCNY P GN VGERPY
Sbjct: 125 NSVRLGCGRARCNNGWWFISCNYDPVGNWVGERPY 159

BLAST of Csa7G070240 vs. Swiss-Prot
Match: PR1C_TOBAC (Pathogenesis-related protein 1C OS=Nicotiana tabacum PE=2 SV=3)

HSP 1 Score: 51.6 bits (122), Expect = 5.1e-06
Identity = 21/35 (60.00%), Postives = 23/35 (65.71%), Query Frame = 1

Query: 53  NSFLVGCATVKCKNNWSLVSCNYSPSGNVVGERPY 88
           NS  VGCA V+C N   +VSCNY P GNV+G+ PY
Sbjct: 134 NSVRVGCARVQCNNGGYIVSCNYDPPGNVIGKSPY 168

BLAST of Csa7G070240 vs. Swiss-Prot
Match: PR06_SOLLC (Pathogenesis-related leaf protein 6 OS=Solanum lycopersicum GN=PR1B1 PE=1 SV=2)

HSP 1 Score: 50.8 bits (120), Expect = 8.7e-06
Identity = 18/35 (51.43%), Postives = 21/35 (60.00%), Query Frame = 1

Query: 53  NSFLVGCATVKCKNNWSLVSCNYSPSGNVVGERPY 88
           NS  +GC   +C N W  +SCNY P GN +G+RPY
Sbjct: 125 NSVRLGCGRARCNNGWWFISCNYDPVGNWIGQRPY 159

BLAST of Csa7G070240 vs. TrEMBL
Match: A0A0A0K2V2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G070240 PE=4 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 1.5e-41
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 1

Query: 1  MSKMALATTLSALCIVALALTPIVIAQNSPQDFFDAHNALTLKIISRRRLKLNSFLVGCA 60
          MSKMALATTLSALCIVALALTPIVIAQNSPQDFFDAHNALTLKIISRRRLKLNSFLVGCA
Sbjct: 1  MSKMALATTLSALCIVALALTPIVIAQNSPQDFFDAHNALTLKIISRRRLKLNSFLVGCA 60

Query: 61 TVKCKNNWSLVSCNYSPSGNVVGERPY 88
          TVKCKNNWSLVSCNYSPSGNVVGERPY
Sbjct: 61 TVKCKNNWSLVSCNYSPSGNVVGERPY 87

BLAST of Csa7G070240 vs. TrEMBL
Match: A0A0A0K4C6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G070250 PE=3 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.1e-10
Identity = 30/35 (85.71%), Postives = 33/35 (94.29%), Query Frame = 1

Query: 53  NSFLVGCATVKCKNNWSLVSCNYSPSGNVVGERPY 88
           NSFL+GCA +KCKNNWSLVSCNYSP+GNVVGE PY
Sbjct: 129 NSFLIGCANIKCKNNWSLVSCNYSPAGNVVGELPY 163

BLAST of Csa7G070240 vs. TrEMBL
Match: A0A0A0K4C6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G070250 PE=3 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 1.4e-02
Identity = 20/45 (44.44%), Postives = 34/45 (75.56%), Query Frame = 1

Query: 1  MSKMALATTLSALCIVALALT-PIVIAQNSPQDFFDAHNALTLKI 45
          MS MAL+   S++C++ L LT P+++A N+PQ++ DAHNA+  ++
Sbjct: 1  MSNMALSNFPSSICLIMLTLTIPMIVAHNTPQNYVDAHNAVRAEV 45


HSP 2 Score: 58.9 bits (141), Expect = 3.5e-06
Identity = 42/136 (30.88%), Postives = 56/136 (41.18%), Query Frame = 1

Query: 4   MALATTLSALCIVALALTPIVIAQNSPQDFFDAHNALTLKI-----ISRRRL-------- 63
           M     + ALC+VA AL+P  +A+NS  D+ DAHNA+  ++     +  + L        
Sbjct: 1   MGFTNLVIALCLVASALSPTCLARNSRGDYLDAHNAVRAEVGVDPLVWNKTLADYAKASP 60

Query: 64  ----------------------KLNSFL-----------------VGCATVKCKNNWSLV 88
                                 K NS                   VGCA VKCKN  + +
Sbjct: 61  QPNFNAKDAVKIWADEKKFYDRKSNSCKGGECGHYTQIVWHDTSQVGCARVKCKNGHTFI 120

BLAST of Csa7G070240 vs. TrEMBL
Match: B9HN40_POPTR (Pathogenesis-related family protein OS=Populus trichocarpa GN=POPTR_0009s08700g PE=3 SV=2)

HSP 1 Score: 58.5 bits (140), Expect = 4.6e-06
Identity = 24/35 (68.57%), Postives = 25/35 (71.43%), Query Frame = 1

Query: 53  NSFLVGCATVKCKNNWSLVSCNYSPSGNVVGERPY 88
           NS  VGCA VKC N W  VSCNY P GN +GERPY
Sbjct: 126 NSVRVGCARVKCTNGWWFVSCNYDPPGNYIGERPY 160

BLAST of Csa7G070240 vs. TrEMBL
Match: B9HN40_POPTR (Pathogenesis-related family protein OS=Populus trichocarpa GN=POPTR_0009s08700g PE=3 SV=2)

HSP 1 Score: 30.4 bits (67), Expect = 1.3e+03
Identity = 18/37 (48.65%), Postives = 24/37 (64.86%), Query Frame = 1

Query: 4  MALATTLSALC-IVALALTPIVIAQNSPQDFFDAHNA 40
          MA++  L  L  +V+LAL     AQNS QD+ +AHNA
Sbjct: 1  MAMSKILPLLVYLVSLALAHPSHAQNSQQDYLNAHNA 37

BLAST of Csa7G070240 vs. TAIR10
Match: AT4G33710.1 (AT4G33710.1 CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein)

HSP 1 Score: 48.9 bits (115), Expect = 1.9e-06
Identity = 22/35 (62.86%), Postives = 22/35 (62.86%), Query Frame = 1

Query: 53  NSFLVGCATVKCKNNWSLVSCNYSPSGNVVGERPY 88
           NS  VGCA VKC N  + V+CNYS  GNV G RPY
Sbjct: 132 NSEWVGCAKVKCDNGGTFVTCNYSHPGNVRGRRPY 166

BLAST of Csa7G070240 vs. TAIR10
Match: AT2G14610.1 (AT2G14610.1 pathogenesis-related gene 1)

HSP 1 Score: 48.1 bits (113), Expect = 3.2e-06
Identity = 18/34 (52.94%), Postives = 22/34 (64.71%), Query Frame = 1

Query: 54  SFLVGCATVKCKNNWSLVSCNYSPSGNVVGERPY 88
           S  +GCA V+C N  +++SCNY P GN V E+PY
Sbjct: 128 SVRLGCAKVRCNNGGTIISCNYDPRGNYVNEKPY 161

BLAST of Csa7G070240 vs. TAIR10
Match: AT2G14580.1 (AT2G14580.1 basic pathogenesis-related protein 1)

HSP 1 Score: 47.8 bits (112), Expect = 4.1e-06
Identity = 17/35 (48.57%), Postives = 22/35 (62.86%), Query Frame = 1

Query: 53  NSFLVGCATVKCKNNWSLVSCNYSPSGNVVGERPY 88
           NS  +GCA V+C N  +++SCNY P GN   ++PY
Sbjct: 127 NSVRLGCAKVRCNNGGTIISCNYDPPGNYANQKPY 161

BLAST of Csa7G070240 vs. TAIR10
Match: AT4G33720.1 (AT4G33720.1 CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein)

HSP 1 Score: 47.4 bits (111), Expect = 5.4e-06
Identity = 19/35 (54.29%), Postives = 22/35 (62.86%), Query Frame = 1

Query: 53  NSFLVGCATVKCKNNWSLVSCNYSPSGNVVGERPY 88
           NS  +GCA V+C N  + ++CNY P GN VGE PY
Sbjct: 129 NSERLGCAKVRCNNGQTFITCNYDPPGNWVGEWPY 163

BLAST of Csa7G070240 vs. NCBI nr
Match: gi|700188595|gb|KGN43828.1| (hypothetical protein Csa_7G070240 [Cucumis sativus])

HSP 1 Score: 176.4 bits (446), Expect = 2.2e-41
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 1

Query: 1  MSKMALATTLSALCIVALALTPIVIAQNSPQDFFDAHNALTLKIISRRRLKLNSFLVGCA 60
          MSKMALATTLSALCIVALALTPIVIAQNSPQDFFDAHNALTLKIISRRRLKLNSFLVGCA
Sbjct: 1  MSKMALATTLSALCIVALALTPIVIAQNSPQDFFDAHNALTLKIISRRRLKLNSFLVGCA 60

Query: 61 TVKCKNNWSLVSCNYSPSGNVVGERPY 88
          TVKCKNNWSLVSCNYSPSGNVVGERPY
Sbjct: 61 TVKCKNNWSLVSCNYSPSGNVVGERPY 87

BLAST of Csa7G070240 vs. NCBI nr
Match: gi|449438610|ref|XP_004137081.1| (PREDICTED: basic form of pathogenesis-related protein 1-like [Cucumis sativus])

HSP 1 Score: 80.5 bits (197), Expect = 1.6e-12
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 1

Query: 53  NSFLVGCATVKCKNNWSLVSCNYSPSGNVVGERPY 88
           NSFLVGCATVKCKNNWSLVSCNYSPSGNVVGERPY
Sbjct: 125 NSFLVGCATVKCKNNWSLVSCNYSPSGNVVGERPY 159

BLAST of Csa7G070240 vs. NCBI nr
Match: gi|449438610|ref|XP_004137081.1| (PREDICTED: basic form of pathogenesis-related protein 1-like [Cucumis sativus])

HSP 1 Score: 75.5 bits (184), Expect = 5.2e-11
Identity = 37/41 (90.24%), Postives = 39/41 (95.12%), Query Frame = 1

Query: 4  MALATTLSALCIVALALTPIVIAQNSPQDFFDAHNALTLKI 45
          MALATTLSALCIVALALTPIVIAQNSPQDFFDAHNA+  K+
Sbjct: 1  MALATTLSALCIVALALTPIVIAQNSPQDFFDAHNAVRAKV 41


HSP 2 Score: 73.9 bits (180), Expect = 1.5e-10
Identity = 30/35 (85.71%), Postives = 33/35 (94.29%), Query Frame = 1

Query: 53  NSFLVGCATVKCKNNWSLVSCNYSPSGNVVGERPY 88
           NSFL+GCA +KCKNNWSLVSCNYSP+GNVVGE PY
Sbjct: 129 NSFLIGCANIKCKNNWSLVSCNYSPAGNVVGELPY 163

BLAST of Csa7G070240 vs. NCBI nr
Match: gi|778724761|ref|XP_004137082.2| (PREDICTED: basic form of pathogenesis-related protein 1-like [Cucumis sativus])

HSP 1 Score: 47.0 bits (110), Expect = 2.0e-02
Identity = 20/45 (44.44%), Postives = 34/45 (75.56%), Query Frame = 1

Query: 1  MSKMALATTLSALCIVALALT-PIVIAQNSPQDFFDAHNALTLKI 45
          MS MAL+   S++C++ L LT P+++A N+PQ++ DAHNA+  ++
Sbjct: 1  MSNMALSNFPSSICLIMLTLTIPMIVAHNTPQNYVDAHNAVRAEV 45


HSP 2 Score: 72.4 bits (176), Expect = 4.4e-10
Identity = 29/35 (82.86%), Postives = 32/35 (91.43%), Query Frame = 1

Query: 53  NSFLVGCATVKCKNNWSLVSCNYSPSGNVVGERPY 88
           NSFL+GCA +KCKNNWSLVSCNYSP+GNV GE PY
Sbjct: 153 NSFLIGCANIKCKNNWSLVSCNYSPAGNVAGELPY 187

BLAST of Csa7G070240 vs. NCBI nr
Match: gi|659110135|ref|XP_008455067.1| (PREDICTED: pathogenesis-related protein 1A-like [Cucumis melo])

HSP 1 Score: 51.6 bits (122), Expect = 8.1e-04
Identity = 20/44 (45.45%), Postives = 34/44 (77.27%), Query Frame = 1

Query: 1  MSKMALATTLSALCIVALALTPIVIAQNSPQDFFDAHNALTLKI 45
          MSKMAL+   S++C++ L L P+++A N+PQ++ DAHNA+  ++
Sbjct: 26 MSKMALSNIPSSICLIMLTLIPMIVAHNTPQNYVDAHNAVRAEV 69


HSP 2 Score: 59.7 bits (143), Expect = 3.0e-06
Identity = 24/35 (68.57%), Postives = 27/35 (77.14%), Query Frame = 1

Query: 53  NSFLVGCATVKCKNNWSLVSCNYSPSGNVVGERPY 88
           NS  VGCA VKC N W  V+CNY+P GN+VGERPY
Sbjct: 126 NSAQVGCARVKCNNGWWFVTCNYNPPGNIVGERPY 160

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
PR1B_TOBAC1.7e-0662.86Pathogenesis-related protein 1B OS=Nicotiana tabacum PE=2 SV=1[more]
PR04_SOLLC3.0e-0657.14Pathogenesis-related leaf protein 4 OS=Solanum lycopersicum PE=2 SV=1[more]
PR1C_TOBAC5.1e-0660.00Pathogenesis-related protein 1C OS=Nicotiana tabacum PE=2 SV=3[more]
PR06_SOLLC8.7e-0651.43Pathogenesis-related leaf protein 6 OS=Solanum lycopersicum GN=PR1B1 PE=1 SV=2[more]
Match NameE-valueIdentityDescription
A0A0A0K2V2_CUCSA1.5e-41100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_7G070240 PE=4 SV=1[more]
A0A0A0K4C6_CUCSA1.1e-1085.71Uncharacterized protein OS=Cucumis sativus GN=Csa_7G070250 PE=3 SV=1[more]
A0A0A0K4C6_CUCSA1.4e-0244.44Uncharacterized protein OS=Cucumis sativus GN=Csa_7G070250 PE=3 SV=1[more]
B9HN40_POPTR4.6e-0668.57Pathogenesis-related family protein OS=Populus trichocarpa GN=POPTR_0009s08700g ... [more]
B9HN40_POPTR1.3e+0348.65Pathogenesis-related family protein OS=Populus trichocarpa GN=POPTR_0009s08700g ... [more]
Match NameE-valueIdentityDescription
AT4G33710.11.9e-0662.86 CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-r... [more]
AT2G14610.13.2e-0652.94 pathogenesis-related gene 1[more]
AT2G14580.14.1e-0648.57 basic pathogenesis-related protein 1[more]
AT4G33720.15.4e-0654.29 CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-r... [more]
Match NameE-valueIdentityDescription
gi|700188595|gb|KGN43828.1|2.2e-41100.00hypothetical protein Csa_7G070240 [Cucumis sativus][more]
gi|449438610|ref|XP_004137081.1|1.6e-12100.00PREDICTED: basic form of pathogenesis-related protein 1-like [Cucumis sativus][more]
gi|449438610|ref|XP_004137081.1|5.2e-1190.24PREDICTED: basic form of pathogenesis-related protein 1-like [Cucumis sativus][more]
gi|778724761|ref|XP_004137082.2|2.0e-0244.44PREDICTED: basic form of pathogenesis-related protein 1-like [Cucumis sativus][more]
gi|659110135|ref|XP_008455067.1|8.1e-0445.45PREDICTED: pathogenesis-related protein 1A-like [Cucumis melo][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR014044CAP_domain
IPR018244Allrgn_V5/Tpx1_CS
Vocabulary: Cellular Component
TermDefinition
GO:0005576extracellular region
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005576 extracellular region
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa7G070240.1Csa7G070240.1mRNA


Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR014044CAP domainGENE3DG3DSA:3.40.33.10coord: 55..87
score: 3.
IPR014044CAP domainunknownSSF55797PR-1-likecoord: 53..87
score: 5.89
IPR018244Allergen V5/Tpx-1-related, conserved sitePROSITEPS01010CRISP_2coord: 70..81
scor

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa7G070240Watermelon (97103) v2cuwmbB518
Csa7G070240Watermelon (97103) v2cuwmbB554
Csa7G070240Wax gourdcuwgoB651
Csa7G070240Wax gourdcuwgoB661
Csa7G070240Wax gourdcuwgoB678
Csa7G070240Cucumber (Chinese Long) v2cucuB079
Csa7G070240Cucumber (Chinese Long) v2cucuB153
Csa7G070240Cucumber (Gy14) v1cgycuB553
Csa7G070240Cucurbita maxima (Rimu)cmacuB146
Csa7G070240Cucurbita maxima (Rimu)cmacuB201
Csa7G070240Cucurbita maxima (Rimu)cmacuB348
Csa7G070240Cucurbita maxima (Rimu)cmacuB776
Csa7G070240Cucurbita moschata (Rifu)cmocuB137
Csa7G070240Cucurbita moschata (Rifu)cmocuB338
Csa7G070240Cucurbita moschata (Rifu)cmocuB769
Csa7G070240Melon (DHL92) v3.5.1cumeB549
Csa7G070240Melon (DHL92) v3.5.1cumeB558
Csa7G070240Melon (DHL92) v3.5.1cumeB562
Csa7G070240Watermelon (Charleston Gray)cuwcgB532
Csa7G070240Watermelon (Charleston Gray)cuwcgB568
Csa7G070240Watermelon (97103) v1cuwmB575
Csa7G070240Watermelon (97103) v1cuwmB576
Csa7G070240Cucurbita pepo (Zucchini)cpecuB470
Csa7G070240Cucurbita pepo (Zucchini)cpecuB695
Csa7G070240Cucurbita pepo (Zucchini)cpecuB804
Csa7G070240Bottle gourd (USVL1VR-Ls)culsiB520
Csa7G070240Bottle gourd (USVL1VR-Ls)culsiB535
Csa7G070240Cucumber (Gy14) v2cgybcuB087
Csa7G070240Cucumber (Gy14) v2cgybcuB194
Csa7G070240Cucumber (Gy14) v2cgybcuB324
Csa7G070240Melon (DHL92) v3.6.1cumedB526
Csa7G070240Melon (DHL92) v3.6.1cumedB539
Csa7G070240Silver-seed gourdcarcuB0207
Csa7G070240Silver-seed gourdcarcuB0323
Csa7G070240Silver-seed gourdcarcuB0410
Csa7G070240Silver-seed gourdcarcuB0487
Csa7G070240Silver-seed gourdcarcuB0751