Csa7G044970 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa7G044970
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionGeranylgeranyl transferase type II beta subunit, putative; contains IPR008930 (Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid), IPR026873 (Geranylgeranyl transferase type-2 subunit beta)
LocationChr7 : 2659119 .. 2659773 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTCCTGAATGTGGGTTTGAACTTCTATTACATATCTAACCAATTCTTTGCTTGGAAGTTATGCATACTCTCCCACTCACCGACTTCATTATGTTGCTTCCGTTTTGCCACTCACGGTGGGTTCTTTCGAGCTTGATCATGATTGACAGAGGTCACTGGATTAATAAGGAAAGACTCATTAAATTCATCTTAGATTCTCAGGTTGTCAAGCCAAATCTTCTTTATCTAGATTGGATTTATGTATAAGGGGTTAATTATATTGCTTTTAACGAAGGTAACTTCCATGACATAACATAACTATTGACAGTTTCAGGACACAGAAAATGGTGGTATTTCAGGCAGACGGGATGACGCTGTTGATGTCTATCACACATGCTTTGGAATAGCTGGTTATTACCGTCATATACAACTAACTTACGTTAATAACTTAATATCTTAACTAAAGACATATGATTCGTGCTCCTGATGTTTACTTTTATTGATGCAGGCCTTTCACTTCTTGAATATCCAGGACCGAAAGCCATTGATCCAGCTTATGCTTTACCAGTTGACGTTGTGAACAGAATTTTCTTGAGCAAAAAAATAGTATCATCCAAAGCTATCGATTGAATTAAATTATAATTCTTTCAAAGATTAGACGATGCATGTCATGGAGG

mRNA sequence

ATGCATACTCTCCCACTCACCGACTTCATTATGTTGCTTCCGTTTTGCCACTCACGGTGGGTTCTTTCGAGCTTGATCATGATTGACAGAGGTCACTGGATTAATAAGGAAAGACTCATTAAATTCATCTTAGATTCTCAGGACACAGAAAATGGTGGTATTTCAGGCAGACGGGATGACGCTGTTGATGTCTATCACACATGCTTTGGAATAGCTGGCCTTTCACTTCTTGAATATCCAGGACCGAAAGCCATTGATCCAGCTTATGCTTTACCAGTTGACGTTGTGAACAGAATTTTCTTGAGCAAAAAAATAGTATCATCCAAAGCTATCGATTGA

Coding sequence (CDS)

ATGCATACTCTCCCACTCACCGACTTCATTATGTTGCTTCCGTTTTGCCACTCACGGTGGGTTCTTTCGAGCTTGATCATGATTGACAGAGGTCACTGGATTAATAAGGAAAGACTCATTAAATTCATCTTAGATTCTCAGGACACAGAAAATGGTGGTATTTCAGGCAGACGGGATGACGCTGTTGATGTCTATCACACATGCTTTGGAATAGCTGGCCTTTCACTTCTTGAATATCCAGGACCGAAAGCCATTGATCCAGCTTATGCTTTACCAGTTGACGTTGTGAACAGAATTTTCTTGAGCAAAAAAATAGTATCATCCAAAGCTATCGATTGA

Protein sequence

MHTLPLTDFIMLLPFCHSRWVLSSLIMIDRGHWINKERLIKFILDSQDTENGGISGRRDDAVDVYHTCFGIAGLSLLEYPGPKAIDPAYALPVDVVNRIFLSKKIVSSKAID*
Homology
[Close]
BLAST of Csa7G044970 vs. Swiss-Prot
Match: PGTB1_ARATH (Geranylgeranyl transferase type-2 subunit beta 1 OS=Arabidopsis thaliana GN=RGTB1 PE=1 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 4.8e-33
Identity = 67/92 (72.83%), Postives = 75/92 (81.52%), Query Frame = 1 

Query: 12  LLPFCHSRWVLSSLIMIDRGHWINKERLIKFILDSQDTENGGISGRRDDAVDVYHTCFGI 71
           L   C+S WVLSSLIMIDR HWI+K +L+KFILD QD +NGGIS R +DAVD++HT FG+
Sbjct: 230 LADVCYSWWVLSSLIMIDRVHWIDKAKLVKFILDCQDLDNGGISDRPEDAVDIFHTYFGV 289

Query: 72  AGLSLLEYPGPKAIDPAYALPVDVVNRIFLSK 104
           AGLSLLEYPG K IDPAYALPVDVVNRI  +K
Sbjct: 290 AGLSLLEYPGVKVIDPAYALPVDVVNRIIFTK 321

[Close]
BLAST of Csa7G044970 vs. Swiss-Prot
Match: PGTB2_ARATH (Geranylgeranyl transferase type-2 subunit beta 2 OS=Arabidopsis thaliana GN=RGTB2 PE=1 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 1.0e-30
Identity = 63/88 (71.59%), Postives = 70/88 (79.55%), Query Frame = 1 

Query: 16  CHSRWVLSSLIMIDRGHWINKERLIKFILDSQDTENGGISGRRDDAVDVYHTCFGIAGLS 75
           C+S WVLSSLIMIDR HWI K +L+KFILDSQD +NGGIS R    VD++HT FG+AGLS
Sbjct: 230 CYSWWVLSSLIMIDRVHWIEKAKLVKFILDSQDMDNGGISDRPSYTVDIFHTYFGVAGLS 289

Query: 76  LLEYPGPKAIDPAYALPVDVVNRIFLSK 104
           LLEYPG K IDPAYALPV V+NRI  +K
Sbjct: 290 LLEYPGVKTIDPAYALPVHVINRILFTK 317

[Close]
BLAST of Csa7G044970 vs. Swiss-Prot
Match: PGTB2_SCHPO (Geranylgeranyl transferase type-2 subunit beta OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ptb1 PE=3 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.1e-18
Identity = 39/86 (45.35%), Postives = 60/86 (69.77%), Query Frame = 1 

Query: 16  CHSRWVLSSLIMIDRGHWINKERLIKFILDSQDTENGGISGRRDDAVDVYHTCFGIAGLS 75
           C+  W LS L +I +  WI++ +LI F+L +QD ++GG + R++DA DVYHTCF +AGLS
Sbjct: 226 CYGWWDLSPLAIIGKLDWIDRNQLIDFLLGTQDADSGGFADRKEDATDVYHTCFSLAGLS 285

Query: 76  LLEYPGPKAIDPAYALPVDVVNRIFL 102
           LL++P  + +DP + LP++V  ++ L
Sbjct: 286 LLQFPNIEPVDPRFCLPLEVTQKMKL 311

[Close]
BLAST of Csa7G044970 vs. Swiss-Prot
Match: PGTB2_CANAX (Geranylgeranyl transferase type-2 subunit beta OS=Candida albicans GN=BET2 PE=3 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 2.5e-18
Identity = 45/85 (52.94%), Postives = 57/85 (67.06%), Query Frame = 1 

Query: 16  CHSRWVLSSLIMIDRGHWINKERLIKFILDSQDTENGGISGRRDDAVDVYHTCFGIAGLS 75
           C+S WVLSSL ++ R +W++ + L  FIL  QD ENGG S R  +  DVYHTCF IAGLS
Sbjct: 251 CYSWWVLSSLSILKRKNWVDLKILENFILTCQDLENGGFSDRPGNQTDVYHTCFAIAGLS 310

Query: 76  LLEYP--GPKAIDPAYALPVDVVNR 99
           L++Y   G K IDP Y +PV+V ++
Sbjct: 311 LIDYKKYGFKEIDPVYCMPVEVTSK 335

[Close]
BLAST of Csa7G044970 vs. Swiss-Prot
Match: PGTB2_YEAST (Geranylgeranyl transferase type-2 subunit beta OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=BET2 PE=1 SV=3)

HSP 1 Score: 91.7 bits (226), Expect = 5.7e-18
Identity = 44/83 (53.01%), Postives = 55/83 (66.27%), Query Frame = 1 

Query: 16  CHSRWVLSSLIMIDRGHWINKERLIKFILDSQDTENGGISGRRDDAVDVYHTCFGIAGLS 75
           C+S WVLSSL +I R  WIN E+L +FIL  QD + GGIS R ++ VDV+HT FG+AGLS
Sbjct: 236 CYSWWVLSSLAIIGRLDWINYEKLTEFILKCQDEKKGGISDRPENEVDVFHTVFGVAGLS 295

Query: 76  LLEYPGPKAIDPAYALPVDVVNR 99
           L+ Y     IDP Y +P  V ++
Sbjct: 296 LMGYDNLVPIDPIYCMPKSVTSK 318

[Close]
BLAST of Csa7G044970 vs. TrEMBL
Match: A0A0A0K5L9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G044970 PE=4 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 6.7e-58
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 1 

Query: 1   MHTLPLTDFIMLLPFCHSRWVLSSLIMIDRGHWINKERLIKFILDSQDTENGGISGRRDD 60
           MHTLPLTDFIMLLPFCHSRWVLSSLIMIDRGHWINKERLIKFILDSQDTENGGISGRRDD
Sbjct: 1   MHTLPLTDFIMLLPFCHSRWVLSSLIMIDRGHWINKERLIKFILDSQDTENGGISGRRDD 60

Query: 61  AVDVYHTCFGIAGLSLLEYPGPKAIDPAYALPVDVVNRIFLSKKIVSSKAID 113
           AVDVYHTCFGIAGLSLLEYPGPKAIDPAYALPVDVVNRIFLSKKIVSSKAID
Sbjct: 61  AVDVYHTCFGIAGLSLLEYPGPKAIDPAYALPVDVVNRIFLSKKIVSSKAID 112

[Close]
BLAST of Csa7G044970 vs. TrEMBL
Match: W9RR75_9ROSA (Geranylgeranyl transferase type-2 subunit beta OS=Morus notabilis GN=L484_002207 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 3.6e-35
Identity = 75/86 (87.21%), Postives = 79/86 (91.86%), Query Frame = 1 

Query: 16  CHSRWVLSSLIMIDRGHWINKERLIKFILDSQDTENGGISGRRDDAVDVYHTCFGIAGLS 75
           C+S WVLSSLIMIDR HWINKE+L+KFILD QDTENGGIS R DDAVDVYHT FG+AGLS
Sbjct: 285 CYSWWVLSSLIMIDRVHWINKEKLVKFILDCQDTENGGISDRPDDAVDVYHTYFGVAGLS 344

Query: 76  LLEYPGPKAIDPAYALPVDVVNRIFL 102
           LLEYPG KAIDPAYALPVDVVNRIFL
Sbjct: 345 LLEYPGVKAIDPAYALPVDVVNRIFL 370

[Close]
BLAST of Csa7G044970 vs. TrEMBL
Match: W9QZF2_9ROSA (Geranylgeranyl transferase type-2 subunit beta OS=Morus notabilis GN=L484_006432 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 1.4e-34
Identity = 74/86 (86.05%), Postives = 79/86 (91.86%), Query Frame = 1 

Query: 16  CHSRWVLSSLIMIDRGHWINKERLIKFILDSQDTENGGISGRRDDAVDVYHTCFGIAGLS 75
           C+S WVLSSLI+IDR HWINKE+L+KFILD QDTENGGIS R DDAVDVYHT FG+AGLS
Sbjct: 285 CYSWWVLSSLIIIDRVHWINKEKLVKFILDCQDTENGGISDRPDDAVDVYHTYFGVAGLS 344

Query: 76  LLEYPGPKAIDPAYALPVDVVNRIFL 102
           LLEYPG KAIDPAYALPVDVVNRIFL
Sbjct: 345 LLEYPGLKAIDPAYALPVDVVNRIFL 370

[Close]
BLAST of Csa7G044970 vs. TrEMBL
Match: A0A067DXP8_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g0213052mg PE=4 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 3.9e-34
Identity = 73/89 (82.02%), Postives = 79/89 (88.76%), Query Frame = 1 

Query: 16  CHSRWVLSSLIMIDRGHWINKERLIKFILDSQDTENGGISGRRDDAVDVYHTCFGIAGLS 75
           C+S WVLSSLIMIDR HWINK++L+KFILD QD ENGGIS R DDAVDV+HT FG+AGLS
Sbjct: 226 CYSWWVLSSLIMIDRVHWINKDKLVKFILDCQDMENGGISDRPDDAVDVFHTYFGVAGLS 285

Query: 76  LLEYPGPKAIDPAYALPVDVVNRIFLSKK 105
           LLEYPG K IDPAYALPVDVVNRIF SKK
Sbjct: 286 LLEYPGLKPIDPAYALPVDVVNRIFFSKK 314

[Close]
BLAST of Csa7G044970 vs. TrEMBL
Match: V4TJT8_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10015999mg PE=4 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 3.9e-34
Identity = 73/89 (82.02%), Postives = 79/89 (88.76%), Query Frame = 1 

Query: 16  CHSRWVLSSLIMIDRGHWINKERLIKFILDSQDTENGGISGRRDDAVDVYHTCFGIAGLS 75
           C+S WVLSSLIMIDR HWINK++L+KFILD QD ENGGIS R DDAVDV+HT FG+AGLS
Sbjct: 226 CYSWWVLSSLIMIDRVHWINKDKLVKFILDCQDMENGGISDRPDDAVDVFHTYFGVAGLS 285

Query: 76  LLEYPGPKAIDPAYALPVDVVNRIFLSKK 105
           LLEYPG K IDPAYALPVDVVNRIF SKK
Sbjct: 286 LLEYPGLKPIDPAYALPVDVVNRIFFSKK 314

[Close]
BLAST of Csa7G044970 vs. TAIR10
Match: AT5G12210.1 (AT5G12210.1 RAB geranylgeranyl transferase beta subunit 1)

HSP 1 Score: 141.7 bits (356), Expect = 2.7e-34
Identity = 67/92 (72.83%), Postives = 75/92 (81.52%), Query Frame = 1 

Query: 12  LLPFCHSRWVLSSLIMIDRGHWINKERLIKFILDSQDTENGGISGRRDDAVDVYHTCFGI 71
           L   C+S WVLSSLIMIDR HWI+K +L+KFILD QD +NGGIS R +DAVD++HT FG+
Sbjct: 230 LADVCYSWWVLSSLIMIDRVHWIDKAKLVKFILDCQDLDNGGISDRPEDAVDIFHTYFGV 289

Query: 72  AGLSLLEYPGPKAIDPAYALPVDVVNRIFLSK 104
           AGLSLLEYPG K IDPAYALPVDVVNRI  +K
Sbjct: 290 AGLSLLEYPGVKVIDPAYALPVDVVNRIIFTK 321

[Close]
BLAST of Csa7G044970 vs. TAIR10
Match: AT3G12070.1 (AT3G12070.1 RAB geranylgeranyl transferase beta subunit 2)

HSP 1 Score: 134.0 bits (336), Expect = 5.6e-32
Identity = 63/88 (71.59%), Postives = 70/88 (79.55%), Query Frame = 1 

Query: 16  CHSRWVLSSLIMIDRGHWINKERLIKFILDSQDTENGGISGRRDDAVDVYHTCFGIAGLS 75
           C+S WVLSSLIMIDR HWI K +L+KFILDSQD +NGGIS R    VD++HT FG+AGLS
Sbjct: 230 CYSWWVLSSLIMIDRVHWIEKAKLVKFILDSQDMDNGGISDRPSYTVDIFHTYFGVAGLS 289

Query: 76  LLEYPGPKAIDPAYALPVDVVNRIFLSK 104
           LLEYPG K IDPAYALPV V+NRI  +K
Sbjct: 290 LLEYPGVKTIDPAYALPVHVINRILFTK 317

[Close]
BLAST of Csa7G044970 vs. NCBI nr
Match: gi|700188324|gb|KGN43557.1| (hypothetical protein Csa_7G044970 [Cucumis sativus])

HSP 1 Score: 231.1 bits (588), Expect = 9.6e-58
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 1 

Query: 1   MHTLPLTDFIMLLPFCHSRWVLSSLIMIDRGHWINKERLIKFILDSQDTENGGISGRRDD 60
           MHTLPLTDFIMLLPFCHSRWVLSSLIMIDRGHWINKERLIKFILDSQDTENGGISGRRDD
Sbjct: 1   MHTLPLTDFIMLLPFCHSRWVLSSLIMIDRGHWINKERLIKFILDSQDTENGGISGRRDD 60

Query: 61  AVDVYHTCFGIAGLSLLEYPGPKAIDPAYALPVDVVNRIFLSKKIVSSKAID 113
           AVDVYHTCFGIAGLSLLEYPGPKAIDPAYALPVDVVNRIFLSKKIVSSKAID
Sbjct: 61  AVDVYHTCFGIAGLSLLEYPGPKAIDPAYALPVDVVNRIFLSKKIVSSKAID 112

[Close]
BLAST of Csa7G044970 vs. NCBI nr
Match: gi|778723897|ref|XP_011658721.1| (PREDICTED: geranylgeranyl transferase type-2 subunit beta-like [Cucumis sativus])

HSP 1 Score: 226.1 bits (575), Expect = 3.1e-56
Identity = 112/114 (98.25%), Postives = 112/114 (98.25%), Query Frame = 1 

Query: 1   MHTLPLTDFIMLLPFCHSRWVLSSLIMIDRGHWINKERLIKFILDSQ--DTENGGISGRR 60
           MHTLPLTDFIMLLPFCHSRWVLSSLIMIDRGHWINKERLIKFILDSQ  DTENGGISGRR
Sbjct: 1   MHTLPLTDFIMLLPFCHSRWVLSSLIMIDRGHWINKERLIKFILDSQFQDTENGGISGRR 60

Query: 61  DDAVDVYHTCFGIAGLSLLEYPGPKAIDPAYALPVDVVNRIFLSKKIVSSKAID 113
           DDAVDVYHTCFGIAGLSLLEYPGPKAIDPAYALPVDVVNRIFLSKKIVSSKAID
Sbjct: 61  DDAVDVYHTCFGIAGLSLLEYPGPKAIDPAYALPVDVVNRIFLSKKIVSSKAID 114

[Close]
BLAST of Csa7G044970 vs. NCBI nr
Match: gi|703133171|ref|XP_010105302.1| (Geranylgeranyl transferase type-2 subunit beta [Morus notabilis])

HSP 1 Score: 155.6 bits (392), Expect = 5.1e-35
Identity = 75/86 (87.21%), Postives = 79/86 (91.86%), Query Frame = 1 

Query: 16  CHSRWVLSSLIMIDRGHWINKERLIKFILDSQDTENGGISGRRDDAVDVYHTCFGIAGLS 75
           C+S WVLSSLIMIDR HWINKE+L+KFILD QDTENGGIS R DDAVDVYHT FG+AGLS
Sbjct: 285 CYSWWVLSSLIMIDRVHWINKEKLVKFILDCQDTENGGISDRPDDAVDVYHTYFGVAGLS 344

Query: 76  LLEYPGPKAIDPAYALPVDVVNRIFL 102
           LLEYPG KAIDPAYALPVDVVNRIFL
Sbjct: 345 LLEYPGVKAIDPAYALPVDVVNRIFL 370

[Close]
BLAST of Csa7G044970 vs. NCBI nr
Match: gi|703095726|ref|XP_010095617.1| (Geranylgeranyl transferase type-2 subunit beta [Morus notabilis])

HSP 1 Score: 153.7 bits (387), Expect = 1.9e-34
Identity = 74/86 (86.05%), Postives = 79/86 (91.86%), Query Frame = 1 

Query: 16  CHSRWVLSSLIMIDRGHWINKERLIKFILDSQDTENGGISGRRDDAVDVYHTCFGIAGLS 75
           C+S WVLSSLI+IDR HWINKE+L+KFILD QDTENGGIS R DDAVDVYHT FG+AGLS
Sbjct: 285 CYSWWVLSSLIIIDRVHWINKEKLVKFILDCQDTENGGISDRPDDAVDVYHTYFGVAGLS 344

Query: 76  LLEYPGPKAIDPAYALPVDVVNRIFL 102
           LLEYPG KAIDPAYALPVDVVNRIFL
Sbjct: 345 LLEYPGLKAIDPAYALPVDVVNRIFL 370

[Close]
BLAST of Csa7G044970 vs. NCBI nr
Match: gi|659122320|ref|XP_008461078.1| (PREDICTED: geranylgeranyl transferase type-2 subunit beta [Cucumis melo])

HSP 1 Score: 152.9 bits (385), Expect = 3.3e-34
Identity = 76/89 (85.39%), Postives = 79/89 (88.76%), Query Frame = 1 

Query: 16  CHSRWVLSSLIMIDRGHWINKERLIKFILDSQDTENGGISGRRDDAVDVYHTCFGIAGLS 75
           C+S WVLSSLIMIDR HWINKE+LIKFILD QDTENGGIS R DDAVDVYHT FGIAGLS
Sbjct: 226 CYSWWVLSSLIMIDRVHWINKEKLIKFILDCQDTENGGISDRPDDAVDVYHTYFGIAGLS 285

Query: 76  LLEYPGPKAIDPAYALPVDVVNRIFLSKK 105
           LLEYP  KAIDPAYALPVDVVNRI L K+
Sbjct: 286 LLEYPSLKAIDPAYALPVDVVNRIRLGKR 314

The following BLAST results are available for this feature:
BLAST of Csa7G044970 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PGTB1_ARATH4.8e-3372.83Geranylgeranyl transferase type-2 subunit beta 1 OS=Arabidopsis thaliana GN=RGTB... [more]
PGTB2_ARATH1.0e-3071.59Geranylgeranyl transferase type-2 subunit beta 2 OS=Arabidopsis thaliana GN=RGTB... [more]
PGTB2_SCHPO1.1e-1845.35Geranylgeranyl transferase type-2 subunit beta OS=Schizosaccharomyces pombe (str... [more]
PGTB2_CANAX2.5e-1852.94Geranylgeranyl transferase type-2 subunit beta OS=Candida albicans GN=BET2 PE=3 ... [more]
PGTB2_YEAST5.7e-1853.01Geranylgeranyl transferase type-2 subunit beta OS=Saccharomyces cerevisiae (stra... [more]
BLAST of Csa7G044970 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K5L9_CUCSA6.7e-58100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_7G044970 PE=4 SV=1[more]
W9RR75_9ROSA3.6e-3587.21Geranylgeranyl transferase type-2 subunit beta OS=Morus notabilis GN=L484_002207... [more]
W9QZF2_9ROSA1.4e-3486.05Geranylgeranyl transferase type-2 subunit beta OS=Morus notabilis GN=L484_006432... [more]
A0A067DXP8_CITSI3.9e-3482.02Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g0213052mg PE=4 SV=1[more]
V4TJT8_9ROSI3.9e-3482.02Uncharacterized protein OS=Citrus clementina GN=CICLE_v10015999mg PE=4 SV=1[more]
BLAST of Csa7G044970 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G12210.12.7e-3472.83 RAB geranylgeranyl transferase beta subunit 1[more]
AT3G12070.15.6e-3271.59 RAB geranylgeranyl transferase beta subunit 2[more]
BLAST of Csa7G044970 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700188324|gb|KGN43557.1|9.6e-58100.00hypothetical protein Csa_7G044970 [Cucumis sativus][more]
gi|778723897|ref|XP_011658721.1|3.1e-5698.25PREDICTED: geranylgeranyl transferase type-2 subunit beta-like [Cucumis sativus][more]
gi|703133171|ref|XP_010105302.1|5.1e-3587.21Geranylgeranyl transferase type-2 subunit beta [Morus notabilis][more]
gi|703095726|ref|XP_010095617.1|1.9e-3486.05Geranylgeranyl transferase type-2 subunit beta [Morus notabilis][more]
gi|659122320|ref|XP_008461078.1|3.3e-3485.39PREDICTED: geranylgeranyl transferase type-2 subunit beta [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001330PFTB_repeat
IPR008930Terpenoid_cyclase/PrenylTrfase
IPR026873Ptb1
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0004663Rab geranylgeranyltransferase activity
Vocabulary: Biological Process
TermDefinition
GO:0018344protein geranylgeranylation
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0018344 protein geranylgeranylation
biological_process GO:0018342 protein prenylation
cellular_component GO:0005968 Rab-protein geranylgeranyltransferase complex
molecular_function GO:0004663 Rab geranylgeranyltransferase activity
molecular_function GO:0003824 catalytic activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa7G044970.1Csa7G044970.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001330PFTB repeatPFAMPF00432Prenyltranscoord: 34..77
score: 9.9
IPR008930Terpenoid cyclases/protein prenyltransferase alpha-alpha toroidGENE3DG3DSA:1.50.10.20coord: 16..99
score: 7.1
IPR008930Terpenoid cyclases/protein prenyltransferase alpha-alpha toroidunknownSSF48239Terpenoid cyclases/Protein prenyltransferasescoord: 16..99
score: 2.97
IPR026873Geranylgeranyl transferase type-2 subunit betaPANTHERPTHR11774:SF11GERANYLGERANYL TRANSFERASE TYPE-2 SUBUNIT BETAcoord: 16..107
score: 1.2
NoneNo IPR availablePANTHERPTHR11774GERANYLGERANYL TRANSFERASE TYPE BETA SUBUNITcoord: 16..107
score: 1.2

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa7G044970Cla007703Watermelon (97103) v1cuwmB596
Csa7G044970ClCG02G001540Watermelon (Charleston Gray)cuwcgB546
Csa7G044970CSPI07G04050Wild cucumber (PI 183967)cpicuB354
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa7G044970Watermelon (97103) v2cuwmbB514
Csa7G044970Watermelon (97103) v2cuwmbB529
Csa7G044970Watermelon (97103) v2cuwmbB536
Csa7G044970Wax gourdcuwgoB670
Csa7G044970Wax gourdcuwgoB687
Csa7G044970Cucumber (Chinese Long) v2cucuB044
Csa7G044970Cucumber (Gy14) v1cgycuB028
Csa7G044970Cucumber (Gy14) v1cgycuB215
Csa7G044970Cucurbita maxima (Rimu)cmacuB147
Csa7G044970Cucurbita maxima (Rimu)cmacuB231
Csa7G044970Cucurbita maxima (Rimu)cmacuB527
Csa7G044970Cucurbita maxima (Rimu)cmacuB569
Csa7G044970Cucurbita maxima (Rimu)cmacuB643
Csa7G044970Cucurbita moschata (Rifu)cmocuB132
Csa7G044970Cucurbita moschata (Rifu)cmocuB218
Csa7G044970Cucurbita moschata (Rifu)cmocuB518
Csa7G044970Cucurbita moschata (Rifu)cmocuB562
Csa7G044970Cucurbita moschata (Rifu)cmocuB632
Csa7G044970Melon (DHL92) v3.5.1cumeB518
Csa7G044970Melon (DHL92) v3.5.1cumeB530
Csa7G044970Melon (DHL92) v3.5.1cumeB564
Csa7G044970Watermelon (Charleston Gray)cuwcgB537
Csa7G044970Watermelon (Charleston Gray)cuwcgB553
Csa7G044970Watermelon (97103) v1cuwmB581
Csa7G044970Watermelon (97103) v1cuwmB593
Csa7G044970Cucurbita pepo (Zucchini)cpecuB257
Csa7G044970Cucurbita pepo (Zucchini)cpecuB298
Csa7G044970Cucurbita pepo (Zucchini)cpecuB526
Csa7G044970Cucurbita pepo (Zucchini)cpecuB690
Csa7G044970Cucurbita pepo (Zucchini)cpecuB765
Csa7G044970Bottle gourd (USVL1VR-Ls)culsiB494
Csa7G044970Bottle gourd (USVL1VR-Ls)culsiB502
Csa7G044970Bottle gourd (USVL1VR-Ls)culsiB507
Csa7G044970Cucumber (Gy14) v2cgybcuB289
Csa7G044970Cucumber (Gy14) v2cgybcuB324
Csa7G044970Melon (DHL92) v3.6.1cumedB498
Csa7G044970Melon (DHL92) v3.6.1cumedB509
Csa7G044970Melon (DHL92) v3.6.1cumedB541
Csa7G044970Silver-seed gourdcarcuB0032
Csa7G044970Silver-seed gourdcarcuB0664
Csa7G044970Silver-seed gourdcarcuB0739
Csa7G044970Silver-seed gourdcarcuB0891