CSPI07G04050 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI07G04050
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionGeranylgeranyl transferase type-2 subunit beta
LocationChr7 : 3145931 .. 3146479 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCATACTCTCCCACTCACCAACTTCATTATGTTGCTTCCGTTTTGCCACTCACGGTGGGTTCTTTCGAGCTTGATCATGATTGACAGAGTTCACTGGATTAATAAGGAAAGACTCATTAAATTCATCTTAGATTCTCAGGTTGTCAAGCCAAATCTTCTTTATCTAGATTGGATTTATGTATAAGGGGTTAATTATATTGCTTTTAACGAAGGTAACTTCCATGACATAACATAACTATTGACAGTTTCAGGACACAGAAAATGGTGGTATTTCAGGCAGACGGGATGACGCTGTTGATGTCTATCACACATGCTTTGGAATAGCTGGTTATTACTGTCATATACAACTAGCTTGTGTTAATAACTTAATATCTTAACTAAAGACATATGATTCGTGCTCCTGATGTTTACTTTTATTGATGCAGGCCTTTCACTTCTTGAATATCCAGGACCGAAAGCCATTGATCCAGCTTATGCTTTACCAGTTGACGTTGTGAACAGAATTTTCTTGAGCAAAAAAATAGTATCATCCAAAGCTATCGATTGA

mRNA sequence

ATGCATACTCTCCCACTCACCAACTTCATTATGTTGCTTCCGTTTTGCCACTCACGGTGGGTTCTTTCGAGCTTGATCATGATTGACAGAGTTCACTGGATTAATAAGGAAAGACTCATTAAATTCATCTTAGATTCTCAGGACACAGAAAATGGTGGTATTTCAGGCAGACGGGATGACGCTGTTGATGTCTATCACACATGCTTTGGAATAGCTGGCCTTTCACTTCTTGAATATCCAGGACCGAAAGCCATTGATCCAGCTTATGCTTTACCAGTTGACGTTGTGAACAGAATTTTCTTGAGCAAAAAAATAGTATCATCCAAAGCTATCGATTGA

Coding sequence (CDS)

ATGCATACTCTCCCACTCACCAACTTCATTATGTTGCTTCCGTTTTGCCACTCACGGTGGGTTCTTTCGAGCTTGATCATGATTGACAGAGTTCACTGGATTAATAAGGAAAGACTCATTAAATTCATCTTAGATTCTCAGGACACAGAAAATGGTGGTATTTCAGGCAGACGGGATGACGCTGTTGATGTCTATCACACATGCTTTGGAATAGCTGGCCTTTCACTTCTTGAATATCCAGGACCGAAAGCCATTGATCCAGCTTATGCTTTACCAGTTGACGTTGTGAACAGAATTTTCTTGAGCAAAAAAATAGTATCATCCAAAGCTATCGATTGA
Homology
[Close]
BLAST of CSPI07G04050 vs. Swiss-Prot
Match: PGTB1_ARATH (Geranylgeranyl transferase type-2 subunit beta 1 OS=Arabidopsis thaliana GN=RGTB1 PE=1 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 2.5e-34
Identity = 68/92 (73.91%), Postives = 78/92 (84.78%), Query Frame = 1 

Query: 12  LLPFCHSRWVLSSLIMIDRVHWINKERLIKFILDSQDTENGGISGRRDDAVDVYHTCFGI 71
           L   C+S WVLSSLIMIDRVHWI+K +L+KFILD QD +NGGIS R +DAVD++HT FG+
Sbjct: 230 LADVCYSWWVLSSLIMIDRVHWIDKAKLVKFILDCQDLDNGGISDRPEDAVDIFHTYFGV 289

Query: 72  AGLSLLEYPGPKAIDPAYALPVDVVNRIFLSK 104
           AGLSLLEYPG K IDPAYALPVDVVNRI  +K
Sbjct: 290 AGLSLLEYPGVKVIDPAYALPVDVVNRIIFTK 321

[Close]
BLAST of CSPI07G04050 vs. Swiss-Prot
Match: PGTB2_ARATH (Geranylgeranyl transferase type-2 subunit beta 2 OS=Arabidopsis thaliana GN=RGTB2 PE=1 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 3.1e-32
Identity = 64/88 (72.73%), Postives = 73/88 (82.95%), Query Frame = 1 

Query: 16  CHSRWVLSSLIMIDRVHWINKERLIKFILDSQDTENGGISGRRDDAVDVYHTCFGIAGLS 75
           C+S WVLSSLIMIDRVHWI K +L+KFILDSQD +NGGIS R    VD++HT FG+AGLS
Sbjct: 230 CYSWWVLSSLIMIDRVHWIEKAKLVKFILDSQDMDNGGISDRPSYTVDIFHTYFGVAGLS 289

Query: 76  LLEYPGPKAIDPAYALPVDVVNRIFLSK 104
           LLEYPG K IDPAYALPV V+NRI  +K
Sbjct: 290 LLEYPGVKTIDPAYALPVHVINRILFTK 317

[Close]
BLAST of CSPI07G04050 vs. Swiss-Prot
Match: PGTB2_SCHPO (Geranylgeranyl transferase type-2 subunit beta OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ptb1 PE=3 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 7.9e-20
Identity = 39/86 (45.35%), Postives = 63/86 (73.26%), Query Frame = 1 

Query: 16  CHSRWVLSSLIMIDRVHWINKERLIKFILDSQDTENGGISGRRDDAVDVYHTCFGIAGLS 75
           C+  W LS L +I ++ WI++ +LI F+L +QD ++GG + R++DA DVYHTCF +AGLS
Sbjct: 226 CYGWWDLSPLAIIGKLDWIDRNQLIDFLLGTQDADSGGFADRKEDATDVYHTCFSLAGLS 285

Query: 76  LLEYPGPKAIDPAYALPVDVVNRIFL 102
           LL++P  + +DP + LP++V  ++ L
Sbjct: 286 LLQFPNIEPVDPRFCLPLEVTQKMKL 311

[Close]
BLAST of CSPI07G04050 vs. Swiss-Prot
Match: PGTB2_YEAST (Geranylgeranyl transferase type-2 subunit beta OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=BET2 PE=1 SV=3)

HSP 1 Score: 95.5 bits (236), Expect = 3.9e-19
Identity = 44/83 (53.01%), Postives = 58/83 (69.88%), Query Frame = 1 

Query: 16  CHSRWVLSSLIMIDRVHWINKERLIKFILDSQDTENGGISGRRDDAVDVYHTCFGIAGLS 75
           C+S WVLSSL +I R+ WIN E+L +FIL  QD + GGIS R ++ VDV+HT FG+AGLS
Sbjct: 236 CYSWWVLSSLAIIGRLDWINYEKLTEFILKCQDEKKGGISDRPENEVDVFHTVFGVAGLS 295

Query: 76  LLEYPGPKAIDPAYALPVDVVNR 99
           L+ Y     IDP Y +P  V ++
Sbjct: 296 LMGYDNLVPIDPIYCMPKSVTSK 318

[Close]
BLAST of CSPI07G04050 vs. Swiss-Prot
Match: PGTB2_HUMAN (Geranylgeranyl transferase type-2 subunit beta OS=Homo sapiens GN=RABGGTB PE=1 SV=2)

HSP 1 Score: 94.7 bits (234), Expect = 6.7e-19
Identity = 44/92 (47.83%), Postives = 63/92 (68.48%), Query Frame = 1 

Query: 16  CHSRWVLSSLIMIDRVHWINKERLIKFILDSQDTENGGISGRRDDAVDVYHTCFGIAGLS 75
           C+S WVL+SL +I R+HWI++E+L  FIL  QD E GG + R  D VD +HT FGIAGLS
Sbjct: 240 CYSWWVLASLKIIGRLHWIDREKLRNFILACQDEETGGFADRPGDMVDPFHTLFGIAGLS 299

Query: 76  LLEYPGPKAIDPAYALPVDVVNRIFLSKKIVS 108
           LL     K ++P + +P +V+ R+ +  ++VS
Sbjct: 300 LLGEEQIKPVNPVFCMPEEVLQRVNVQPELVS 331

[Close]
BLAST of CSPI07G04050 vs. TrEMBL
Match: A0A0A0K5L9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G044970 PE=4 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 2.1e-56
Identity = 110/112 (98.21%), Postives = 111/112 (99.11%), Query Frame = 1 

Query: 1   MHTLPLTNFIMLLPFCHSRWVLSSLIMIDRVHWINKERLIKFILDSQDTENGGISGRRDD 60
           MHTLPLT+FIMLLPFCHSRWVLSSLIMIDR HWINKERLIKFILDSQDTENGGISGRRDD
Sbjct: 1   MHTLPLTDFIMLLPFCHSRWVLSSLIMIDRGHWINKERLIKFILDSQDTENGGISGRRDD 60

Query: 61  AVDVYHTCFGIAGLSLLEYPGPKAIDPAYALPVDVVNRIFLSKKIVSSKAID 113
           AVDVYHTCFGIAGLSLLEYPGPKAIDPAYALPVDVVNRIFLSKKIVSSKAID
Sbjct: 61  AVDVYHTCFGIAGLSLLEYPGPKAIDPAYALPVDVVNRIFLSKKIVSSKAID 112

[Close]
BLAST of CSPI07G04050 vs. TrEMBL
Match: W9RR75_9ROSA (Geranylgeranyl transferase type-2 subunit beta OS=Morus notabilis GN=L484_002207 PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 1.4e-36
Identity = 76/86 (88.37%), Postives = 80/86 (93.02%), Query Frame = 1 

Query: 16  CHSRWVLSSLIMIDRVHWINKERLIKFILDSQDTENGGISGRRDDAVDVYHTCFGIAGLS 75
           C+S WVLSSLIMIDRVHWINKE+L+KFILD QDTENGGIS R DDAVDVYHT FG+AGLS
Sbjct: 285 CYSWWVLSSLIMIDRVHWINKEKLVKFILDCQDTENGGISDRPDDAVDVYHTYFGVAGLS 344

Query: 76  LLEYPGPKAIDPAYALPVDVVNRIFL 102
           LLEYPG KAIDPAYALPVDVVNRIFL
Sbjct: 345 LLEYPGVKAIDPAYALPVDVVNRIFL 370

[Close]
BLAST of CSPI07G04050 vs. TrEMBL
Match: W9QZF2_9ROSA (Geranylgeranyl transferase type-2 subunit beta OS=Morus notabilis GN=L484_006432 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 5.5e-36
Identity = 75/86 (87.21%), Postives = 80/86 (93.02%), Query Frame = 1 

Query: 16  CHSRWVLSSLIMIDRVHWINKERLIKFILDSQDTENGGISGRRDDAVDVYHTCFGIAGLS 75
           C+S WVLSSLI+IDRVHWINKE+L+KFILD QDTENGGIS R DDAVDVYHT FG+AGLS
Sbjct: 285 CYSWWVLSSLIIIDRVHWINKEKLVKFILDCQDTENGGISDRPDDAVDVYHTYFGVAGLS 344

Query: 76  LLEYPGPKAIDPAYALPVDVVNRIFL 102
           LLEYPG KAIDPAYALPVDVVNRIFL
Sbjct: 345 LLEYPGLKAIDPAYALPVDVVNRIFL 370

[Close]
BLAST of CSPI07G04050 vs. TrEMBL
Match: A0A067DXP8_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g0213052mg PE=4 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 1.2e-35
Identity = 74/89 (83.15%), Postives = 80/89 (89.89%), Query Frame = 1 

Query: 16  CHSRWVLSSLIMIDRVHWINKERLIKFILDSQDTENGGISGRRDDAVDVYHTCFGIAGLS 75
           C+S WVLSSLIMIDRVHWINK++L+KFILD QD ENGGIS R DDAVDV+HT FG+AGLS
Sbjct: 226 CYSWWVLSSLIMIDRVHWINKDKLVKFILDCQDMENGGISDRPDDAVDVFHTYFGVAGLS 285

Query: 76  LLEYPGPKAIDPAYALPVDVVNRIFLSKK 105
           LLEYPG K IDPAYALPVDVVNRIF SKK
Sbjct: 286 LLEYPGLKPIDPAYALPVDVVNRIFFSKK 314

[Close]
BLAST of CSPI07G04050 vs. TrEMBL
Match: V4TJT8_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10015999mg PE=4 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 1.2e-35
Identity = 74/89 (83.15%), Postives = 80/89 (89.89%), Query Frame = 1 

Query: 16  CHSRWVLSSLIMIDRVHWINKERLIKFILDSQDTENGGISGRRDDAVDVYHTCFGIAGLS 75
           C+S WVLSSLIMIDRVHWINK++L+KFILD QD ENGGIS R DDAVDV+HT FG+AGLS
Sbjct: 226 CYSWWVLSSLIMIDRVHWINKDKLVKFILDCQDMENGGISDRPDDAVDVFHTYFGVAGLS 285

Query: 76  LLEYPGPKAIDPAYALPVDVVNRIFLSKK 105
           LLEYPG K IDPAYALPVDVVNRIF SKK
Sbjct: 286 LLEYPGLKPIDPAYALPVDVVNRIFFSKK 314

[Close]
BLAST of CSPI07G04050 vs. TAIR10
Match: AT5G12210.1 (AT5G12210.1 RAB geranylgeranyl transferase beta subunit 1)

HSP 1 Score: 146.0 bits (367), Expect = 1.4e-35
Identity = 68/92 (73.91%), Postives = 78/92 (84.78%), Query Frame = 1 

Query: 12  LLPFCHSRWVLSSLIMIDRVHWINKERLIKFILDSQDTENGGISGRRDDAVDVYHTCFGI 71
           L   C+S WVLSSLIMIDRVHWI+K +L+KFILD QD +NGGIS R +DAVD++HT FG+
Sbjct: 230 LADVCYSWWVLSSLIMIDRVHWIDKAKLVKFILDCQDLDNGGISDRPEDAVDIFHTYFGV 289

Query: 72  AGLSLLEYPGPKAIDPAYALPVDVVNRIFLSK 104
           AGLSLLEYPG K IDPAYALPVDVVNRI  +K
Sbjct: 290 AGLSLLEYPGVKVIDPAYALPVDVVNRIIFTK 321

[Close]
BLAST of CSPI07G04050 vs. TAIR10
Match: AT3G12070.1 (AT3G12070.1 RAB geranylgeranyl transferase beta subunit 2)

HSP 1 Score: 139.0 bits (349), Expect = 1.7e-33
Identity = 64/88 (72.73%), Postives = 73/88 (82.95%), Query Frame = 1 

Query: 16  CHSRWVLSSLIMIDRVHWINKERLIKFILDSQDTENGGISGRRDDAVDVYHTCFGIAGLS 75
           C+S WVLSSLIMIDRVHWI K +L+KFILDSQD +NGGIS R    VD++HT FG+AGLS
Sbjct: 230 CYSWWVLSSLIMIDRVHWIEKAKLVKFILDSQDMDNGGISDRPSYTVDIFHTYFGVAGLS 289

Query: 76  LLEYPGPKAIDPAYALPVDVVNRIFLSK 104
           LLEYPG K IDPAYALPV V+NRI  +K
Sbjct: 290 LLEYPGVKTIDPAYALPVHVINRILFTK 317

[Close]
BLAST of CSPI07G04050 vs. NCBI nr
Match: gi|700188324|gb|KGN43557.1| (hypothetical protein Csa_7G044970 [Cucumis sativus])

HSP 1 Score: 226.1 bits (575), Expect = 3.1e-56
Identity = 110/112 (98.21%), Postives = 111/112 (99.11%), Query Frame = 1 

Query: 1   MHTLPLTNFIMLLPFCHSRWVLSSLIMIDRVHWINKERLIKFILDSQDTENGGISGRRDD 60
           MHTLPLT+FIMLLPFCHSRWVLSSLIMIDR HWINKERLIKFILDSQDTENGGISGRRDD
Sbjct: 1   MHTLPLTDFIMLLPFCHSRWVLSSLIMIDRGHWINKERLIKFILDSQDTENGGISGRRDD 60

Query: 61  AVDVYHTCFGIAGLSLLEYPGPKAIDPAYALPVDVVNRIFLSKKIVSSKAID 113
           AVDVYHTCFGIAGLSLLEYPGPKAIDPAYALPVDVVNRIFLSKKIVSSKAID
Sbjct: 61  AVDVYHTCFGIAGLSLLEYPGPKAIDPAYALPVDVVNRIFLSKKIVSSKAID 112

[Close]
BLAST of CSPI07G04050 vs. NCBI nr
Match: gi|778723897|ref|XP_011658721.1| (PREDICTED: geranylgeranyl transferase type-2 subunit beta-like [Cucumis sativus])

HSP 1 Score: 221.1 bits (562), Expect = 9.9e-55
Identity = 110/114 (96.49%), Postives = 111/114 (97.37%), Query Frame = 1 

Query: 1   MHTLPLTNFIMLLPFCHSRWVLSSLIMIDRVHWINKERLIKFILDSQ--DTENGGISGRR 60
           MHTLPLT+FIMLLPFCHSRWVLSSLIMIDR HWINKERLIKFILDSQ  DTENGGISGRR
Sbjct: 1   MHTLPLTDFIMLLPFCHSRWVLSSLIMIDRGHWINKERLIKFILDSQFQDTENGGISGRR 60

Query: 61  DDAVDVYHTCFGIAGLSLLEYPGPKAIDPAYALPVDVVNRIFLSKKIVSSKAID 113
           DDAVDVYHTCFGIAGLSLLEYPGPKAIDPAYALPVDVVNRIFLSKKIVSSKAID
Sbjct: 61  DDAVDVYHTCFGIAGLSLLEYPGPKAIDPAYALPVDVVNRIFLSKKIVSSKAID 114

[Close]
BLAST of CSPI07G04050 vs. NCBI nr
Match: gi|703133171|ref|XP_010105302.1| (Geranylgeranyl transferase type-2 subunit beta [Morus notabilis])

HSP 1 Score: 160.2 bits (404), Expect = 2.1e-36
Identity = 76/86 (88.37%), Postives = 80/86 (93.02%), Query Frame = 1 

Query: 16  CHSRWVLSSLIMIDRVHWINKERLIKFILDSQDTENGGISGRRDDAVDVYHTCFGIAGLS 75
           C+S WVLSSLIMIDRVHWINKE+L+KFILD QDTENGGIS R DDAVDVYHT FG+AGLS
Sbjct: 285 CYSWWVLSSLIMIDRVHWINKEKLVKFILDCQDTENGGISDRPDDAVDVYHTYFGVAGLS 344

Query: 76  LLEYPGPKAIDPAYALPVDVVNRIFL 102
           LLEYPG KAIDPAYALPVDVVNRIFL
Sbjct: 345 LLEYPGVKAIDPAYALPVDVVNRIFL 370

[Close]
BLAST of CSPI07G04050 vs. NCBI nr
Match: gi|703095726|ref|XP_010095617.1| (Geranylgeranyl transferase type-2 subunit beta [Morus notabilis])

HSP 1 Score: 158.3 bits (399), Expect = 7.9e-36
Identity = 75/86 (87.21%), Postives = 80/86 (93.02%), Query Frame = 1 

Query: 16  CHSRWVLSSLIMIDRVHWINKERLIKFILDSQDTENGGISGRRDDAVDVYHTCFGIAGLS 75
           C+S WVLSSLI+IDRVHWINKE+L+KFILD QDTENGGIS R DDAVDVYHT FG+AGLS
Sbjct: 285 CYSWWVLSSLIIIDRVHWINKEKLVKFILDCQDTENGGISDRPDDAVDVYHTYFGVAGLS 344

Query: 76  LLEYPGPKAIDPAYALPVDVVNRIFL 102
           LLEYPG KAIDPAYALPVDVVNRIFL
Sbjct: 345 LLEYPGLKAIDPAYALPVDVVNRIFL 370

[Close]
BLAST of CSPI07G04050 vs. NCBI nr
Match: gi|659122320|ref|XP_008461078.1| (PREDICTED: geranylgeranyl transferase type-2 subunit beta [Cucumis melo])

HSP 1 Score: 157.9 bits (398), Expect = 1.0e-35
Identity = 77/89 (86.52%), Postives = 80/89 (89.89%), Query Frame = 1 

Query: 16  CHSRWVLSSLIMIDRVHWINKERLIKFILDSQDTENGGISGRRDDAVDVYHTCFGIAGLS 75
           C+S WVLSSLIMIDRVHWINKE+LIKFILD QDTENGGIS R DDAVDVYHT FGIAGLS
Sbjct: 226 CYSWWVLSSLIMIDRVHWINKEKLIKFILDCQDTENGGISDRPDDAVDVYHTYFGIAGLS 285

Query: 76  LLEYPGPKAIDPAYALPVDVVNRIFLSKK 105
           LLEYP  KAIDPAYALPVDVVNRI L K+
Sbjct: 286 LLEYPSLKAIDPAYALPVDVVNRIRLGKR 314

The following BLAST results are available for this feature:
BLAST of CSPI07G04050 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PGTB1_ARATH2.5e-3473.91Geranylgeranyl transferase type-2 subunit beta 1 OS=Arabidopsis thaliana GN=RGTB... [more]
PGTB2_ARATH3.1e-3272.73Geranylgeranyl transferase type-2 subunit beta 2 OS=Arabidopsis thaliana GN=RGTB... [more]
PGTB2_SCHPO7.9e-2045.35Geranylgeranyl transferase type-2 subunit beta OS=Schizosaccharomyces pombe (str... [more]
PGTB2_YEAST3.9e-1953.01Geranylgeranyl transferase type-2 subunit beta OS=Saccharomyces cerevisiae (stra... [more]
PGTB2_HUMAN6.7e-1947.83Geranylgeranyl transferase type-2 subunit beta OS=Homo sapiens GN=RABGGTB PE=1 S... [more]
BLAST of CSPI07G04050 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K5L9_CUCSA2.1e-5698.21Uncharacterized protein OS=Cucumis sativus GN=Csa_7G044970 PE=4 SV=1[more]
W9RR75_9ROSA1.4e-3688.37Geranylgeranyl transferase type-2 subunit beta OS=Morus notabilis GN=L484_002207... [more]
W9QZF2_9ROSA5.5e-3687.21Geranylgeranyl transferase type-2 subunit beta OS=Morus notabilis GN=L484_006432... [more]
A0A067DXP8_CITSI1.2e-3583.15Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g0213052mg PE=4 SV=1[more]
V4TJT8_9ROSI1.2e-3583.15Uncharacterized protein OS=Citrus clementina GN=CICLE_v10015999mg PE=4 SV=1[more]
BLAST of CSPI07G04050 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G12210.11.4e-3573.91 RAB geranylgeranyl transferase beta subunit 1[more]
AT3G12070.11.7e-3372.73 RAB geranylgeranyl transferase beta subunit 2[more]
BLAST of CSPI07G04050 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700188324|gb|KGN43557.1|3.1e-5698.21hypothetical protein Csa_7G044970 [Cucumis sativus][more]
gi|778723897|ref|XP_011658721.1|9.9e-5596.49PREDICTED: geranylgeranyl transferase type-2 subunit beta-like [Cucumis sativus][more]
gi|703133171|ref|XP_010105302.1|2.1e-3688.37Geranylgeranyl transferase type-2 subunit beta [Morus notabilis][more]
gi|703095726|ref|XP_010095617.1|7.9e-3687.21Geranylgeranyl transferase type-2 subunit beta [Morus notabilis][more]
gi|659122320|ref|XP_008461078.1|1.0e-3586.52PREDICTED: geranylgeranyl transferase type-2 subunit beta [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001330PFTB_repeat
IPR008930Terpenoid_cyclase/PrenylTrfase
IPR026873Ptb1
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0004663Rab geranylgeranyltransferase activity
Vocabulary: Biological Process
TermDefinition
GO:0018344protein geranylgeranylation
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0018344 protein geranylgeranylation
biological_process GO:0018342 protein prenylation
cellular_component GO:0005968 Rab-protein geranylgeranyltransferase complex
molecular_function GO:0004663 Rab geranylgeranyltransferase activity
molecular_function GO:0003824 catalytic activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI07G04050.1CSPI07G04050.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001330PFTB repeatPFAMPF00432Prenyltranscoord: 34..77
score: 9.9
IPR008930Terpenoid cyclases/protein prenyltransferase alpha-alpha toroidGENE3DG3DSA:1.50.10.20coord: 16..99
score: 2.2
IPR008930Terpenoid cyclases/protein prenyltransferase alpha-alpha toroidunknownSSF48239Terpenoid cyclases/Protein prenyltransferasescoord: 16..99
score: 2.27
IPR026873Geranylgeranyl transferase type-2 subunit betaPANTHERPTHR11774:SF11GERANYLGERANYL TRANSFERASE TYPE-2 SUBUNIT BETAcoord: 16..107
score: 1.3
NoneNo IPR availablePANTHERPTHR11774GERANYLGERANYL TRANSFERASE TYPE BETA SUBUNITcoord: 16..107
score: 1.3

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI07G04050Cla007703Watermelon (97103) v1cpiwmB614
CSPI07G04050Csa7G044970Cucumber (Chinese Long) v2cpicuB354
CSPI07G04050ClCG02G001540Watermelon (Charleston Gray)cpiwcgB574
CSPI07G04050CsaV3_7G003910Cucumber (Chinese Long) v3cpicucB415
CSPI07G04050Bhi05G001139Wax gourdcpiwgoB681
CSPI07G04050Cucsa.148200Cucumber (Gy14) v1cgycpiB220
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI07G04050Melon (DHL92) v3.5.1cpimeB575
CSPI07G04050Watermelon (Charleston Gray)cpiwcgB566
CSPI07G04050Watermelon (Charleston Gray)cpiwcgB583
CSPI07G04050Watermelon (97103) v1cpiwmB600
CSPI07G04050Watermelon (97103) v1cpiwmB612
CSPI07G04050Cucurbita pepo (Zucchini)cpecpiB257
CSPI07G04050Cucurbita pepo (Zucchini)cpecpiB301
CSPI07G04050Cucurbita pepo (Zucchini)cpecpiB692
CSPI07G04050Cucurbita pepo (Zucchini)cpecpiB768
CSPI07G04050Bottle gourd (USVL1VR-Ls)cpilsiB505
CSPI07G04050Bottle gourd (USVL1VR-Ls)cpilsiB516
CSPI07G04050Bottle gourd (USVL1VR-Ls)cpilsiB522
CSPI07G04050Melon (DHL92) v3.6.1cpimedB509
CSPI07G04050Melon (DHL92) v3.6.1cpimedB523
CSPI07G04050Melon (DHL92) v3.6.1cpimedB560
CSPI07G04050Cucumber (Gy14) v2cgybcpiB332
CSPI07G04050Silver-seed gourdcarcpiB0034
CSPI07G04050Silver-seed gourdcarcpiB0673
CSPI07G04050Silver-seed gourdcarcpiB0755
CSPI07G04050Silver-seed gourdcarcpiB0911
CSPI07G04050Cucumber (Chinese Long) v3cpicucB380
CSPI07G04050Cucumber (Chinese Long) v3cpicucB409
CSPI07G04050Watermelon (97103) v2cpiwmbB562
CSPI07G04050Watermelon (97103) v2cpiwmbB553
CSPI07G04050Watermelon (97103) v2cpiwmbB539
CSPI07G04050Wax gourdcpiwgoB699
CSPI07G04050Wild cucumber (PI 183967)cpicpiB050
CSPI07G04050Wild cucumber (PI 183967)cpicpiB188
CSPI07G04050Cucumber (Gy14) v1cgycpiB029
CSPI07G04050Cucurbita maxima (Rimu)cmacpiB144
CSPI07G04050Cucurbita maxima (Rimu)cmacpiB233
CSPI07G04050Cucurbita maxima (Rimu)cmacpiB533
CSPI07G04050Cucurbita maxima (Rimu)cmacpiB576
CSPI07G04050Cucurbita maxima (Rimu)cmacpiB650
CSPI07G04050Cucurbita moschata (Rifu)cmocpiB131
CSPI07G04050Cucurbita moschata (Rifu)cmocpiB220
CSPI07G04050Cucurbita moschata (Rifu)cmocpiB524
CSPI07G04050Cucurbita moschata (Rifu)cmocpiB568
CSPI07G04050Cucurbita moschata (Rifu)cmocpiB643
CSPI07G04050Melon (DHL92) v3.5.1cpimeB538