Csa7G037570 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa7G037570
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionPolygalacturonase; contains IPR000743 (Glycoside hydrolase, family 28), IPR011050 (Pectin lyase fold/virulence factor)
LocationChr7 : 2007896 .. 2008791 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGAAGGACATAACTTCGTTGGATAGTAAGAATTTTCACTTCAATCTTTTGGGTTGCAAGAATGTTACTTTTCAAAATGTGACAATTATTGCACCAGAGAATAGTCCCAACACCGATGGAATTCATGTGAGCAGTTCAGAAGTGATTAACATTTTCAATACACGTATCTCAACCGGAGATGATTGTATATCTGTTGGAGACAGCAACAAGCAAATAACTATTACTAATGTAACTTGCGGACCAGGTCATGGCATAAGTATAGGAAGTTTAGGCAAGTACACCAAGGAGAAAGAGGTGGCAGGAGTTACAGTGAAATCATGTAAACTTATCAATACTTCAAATGGTGTTAGAATCAAGACATGGCCAGATTGTGCAGTTGCATACACAGCCTCTGACTTGCATTTTGAAGATATTGAAATGGTTAATGTTAGCAATCCTGTGATTATTGACCAAGAATATTGTCCATCTAATCAATGCAACAAAAAGGTATATGTATTGAAATTATTCCTTATTCATAAATTTCAACTAATTAATTAATTAACTTCAATTAAGGAATATTTTTTCTTATATATAACAAATGCAAAACTAACCTGATTTAATTTTTGGTTTTCTTTATGTATACATTTGTTCAGATTCCATCAAAAATTAAGATCAACAACGTTAGTTTCAAGAATATCAGAGGCACTTCTGCTACTTTCGTTGCTGTTAAATTTATTTGTAGCACAGTCTTTTCGTGTGAAGGTGTGGAAGTTACAGATATTGACCTCGCTTACATCGGAACTCAAGGACGGATTACGTCTCAGTGTAGAAATGTGATTCCCATCATTACTGGAAAGCAAAATCCTCGTGCGTGTGTTGAAGCTGCTCCTGTTAATTCTCCATCCACGGACTGA

mRNA sequence

ATGGTGAAGGACATAACTTCGTTGGATAGTAAGAATTTTCACTTCAATCTTTTGGGTTGCAAGAATGTTACTTTTCAAAATGTGACAATTATTGCACCAGAGAATAGTCCCAACACCGATGGAATTCATGTGAGCAGTTCAGAAGTGATTAACATTTTCAATACACGTATCTCAACCGGAGATGATTGTATATCTGTTGGAGACAGCAACAAGCAAATAACTATTACTAATGTAACTTGCGGACCAGGTCATGGCATAAGTATAGGAAGTTTAGGCAAGTACACCAAGGAGAAAGAGGTGGCAGGAGTTACAGTGAAATCATGTAAACTTATCAATACTTCAAATGGTGTTAGAATCAAGACATGGCCAGATTGTGCAGTTGCATACACAGCCTCTGACTTGCATTTTGAAGATATTGAAATGGTTAATGTTAGCAATCCTGTGATTATTGACCAAGAATATTGTCCATCTAATCAATGCAACAAAAAGCAAAATCCTCGTGCGTGTGTTGAAGCTGCTCCTGTTAATTCTCCATCCACGGACTGA

Coding sequence (CDS)

ATGGTGAAGGACATAACTTCGTTGGATAGTAAGAATTTTCACTTCAATCTTTTGGGTTGCAAGAATGTTACTTTTCAAAATGTGACAATTATTGCACCAGAGAATAGTCCCAACACCGATGGAATTCATGTGAGCAGTTCAGAAGTGATTAACATTTTCAATACACGTATCTCAACCGGAGATGATTGTATATCTGTTGGAGACAGCAACAAGCAAATAACTATTACTAATGTAACTTGCGGACCAGGTCATGGCATAAGTATAGGAAGTTTAGGCAAGTACACCAAGGAGAAAGAGGTGGCAGGAGTTACAGTGAAATCATGTAAACTTATCAATACTTCAAATGGTGTTAGAATCAAGACATGGCCAGATTGTGCAGTTGCATACACAGCCTCTGACTTGCATTTTGAAGATATTGAAATGGTTAATGTTAGCAATCCTGTGATTATTGACCAAGAATATTGTCCATCTAATCAATGCAACAAAAAGCAAAATCCTCGTGCGTGTGTTGAAGCTGCTCCTGTTAATTCTCCATCCACGGACTGA

Protein sequence

MVKDITSLDSKNFHFNLLGCKNVTFQNVTIIAPENSPNTDGIHVSSSEVINIFNTRISTGDDCISVGDSNKQITITNVTCGPGHGISIGSLGKYTKEKEVAGVTVKSCKLINTSNGVRIKTWPDCAVAYTASDLHFEDIEMVNVSNPVIIDQEYCPSNQCNKKQNPRACVEAAPVNSPSTD*
Homology
[Close]
BLAST of Csa7G037570 vs. Swiss-Prot
Match: PGLR_MEDSA (Polygalacturonase OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 6.3e-59
Identity = 105/166 (63.25%), Postives = 123/166 (74.10%), Query Frame = 1 

Query: 1   MVKDITSLDSKNFHFNLLGCKNVTFQNVTIIAPENSPNTDGIHVSSSEVINIFNTRISTG 60
           +V+ +TS DSKNFH  + GCKN+TF   TI AP +SPNTDGIH+  S  + I NT I TG
Sbjct: 159 IVRGVTSKDSKNFHVMVFGCKNITFDGFTITAPGDSPNTDGIHMGKSTDVKILNTNIGTG 218

Query: 61  DDCISVGDSNKQITITNVTCGPGHGISIGSLGKYTKEKEVAGVTVKSCKLINTSNGVRIK 120
           DDC+S+GD +KQIT+  V CGPGHG+S+GSLGK+T E+ V G+TVK+C L  T NGVRIK
Sbjct: 219 DDCVSIGDGSKQITVQGVNCGPGHGLSVGSLGKFTTEENVEGITVKNCTLTATDNGVRIK 278

Query: 121 TWPDCAVAYTASDLHFEDIEMVNVSNPVIIDQEYCPSNQCNKKQNP 167
           TWPD     T SD+HFEDI M NV NPVIIDQEY P NQC+KK NP
Sbjct: 279 TWPDAPGTITVSDIHFEDITMTNVKNPVIIDQEYYPWNQCSKK-NP 323

[Close]
BLAST of Csa7G037570 vs. Swiss-Prot
Match: PGLR_BRANA (Polygalacturonase OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 9.0e-58
Identity = 101/163 (61.96%), Postives = 124/163 (76.07%), Query Frame = 1 

Query: 2   VKDITSLDSKNFHFNLLGCKNVTFQNVTIIAPENSPNTDGIHVSSSEVINIFNTRISTGD 61
           +KD+TSLD+KNFHFN++  KN+TF N+ IIAP  SPNTDGIH+   E + I NT+I+TGD
Sbjct: 151 IKDVTSLDAKNFHFNVISGKNMTFDNIKIIAPAESPNTDGIHLGRCEGVKILNTKIATGD 210

Query: 62  DCISVGDSNKQITITNVTCGPGHGISIGSLGKYTKEKEVAGVTVKSCKLINTSNGVRIKT 121
           DCISVGD  K + I  V CGPGHGIS+GSLG+Y  E++V  +TVK+C L  TSNG+RIKT
Sbjct: 211 DCISVGDGMKNLLIEKVVCGPGHGISVGSLGRYGWEQDVTDITVKNCTLEGTSNGLRIKT 270

Query: 122 WPDCAVAYTASDLHFEDIEMVNVSNPVIIDQEYCPSNQCNKKQ 165
           WP  A   TA+ +HFEDI +  VSNP++IDQEYCP NQCNK +
Sbjct: 271 WPSAACTTTAAGIHFEDIILNKVSNPILIDQEYCPWNQCNKNK 313

[Close]
BLAST of Csa7G037570 vs. Swiss-Prot
Match: PGLR2_PLAAC (Exopolygalacturonase (Fragment) OS=Platanus acerifolia GN=plaa2 PE=1 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 3.6e-54
Identity = 99/167 (59.28%), Postives = 124/167 (74.25%), Query Frame = 1 

Query: 1   MVKDITSLDSKNFHFNLLGCKNVTFQNVTIIAPENSPNTDGIHVSSSEVINIFNTRISTG 60
           MV+DITSL+SK FH N+L C+++TFQ+VT+ AP  S NTDGIHV  S+ + I NT+I+TG
Sbjct: 140 MVRDITSLNSKMFHINVLECEDITFQHVTVTAPGTSINTDGIHVGISKGVTITNTKIATG 199

Query: 61  DDCISVGDSNKQITITNVTCGPGHGISIGSLGKYTKEKEVAGVTVKSCKLINTSNGVRIK 120
           DDCIS+G  ++ +TIT V CGPGHGISIGSLG+Y  EKEV G+TVK C    T NGVR+K
Sbjct: 200 DDCISIGPGSQNVTITQVNCGPGHGISIGSLGRYNNEKEVRGITVKGCTFSGTMNGVRVK 259

Query: 121 TWPDCAVAYTASDLHFEDIEMVNVSNPVIIDQEYCPSNQCNKKQNPR 168
           TWP+      A+DL F+D+ M NV NPVI+DQEYCP  QC+++   R
Sbjct: 260 TWPNSPPG-AATDLTFQDLTMNNVQNPVILDQEYCPYGQCSRQAPSR 305

[Close]
BLAST of Csa7G037570 vs. Swiss-Prot
Match: PGLR_OENOR (Exopolygalacturonase (Fragment) OS=Oenothera organensis PE=2 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 3.0e-53
Identity = 93/160 (58.13%), Postives = 119/160 (74.38%), Query Frame = 1 

Query: 1   MVKDITSLDSKNFHFNLLGCKNVTFQNVTIIAPENSPNTDGIHVSSSEVINIFNTRISTG 60
           +++D+T+LDSKNFH N++GCKN+TF+   I A E S NTDGIH+  S+ +NI NT I TG
Sbjct: 119 ILRDVTTLDSKNFHVNVIGCKNLTFERFKISAAETSINTDGIHIGRSDGVNIINTEIKTG 178

Query: 61  DDCISVGDSNKQITITNVTCGPGHGISIGSLGKYTKEKEVAGVTVKSCKLINTSNGVRIK 120
           DDCIS+GD +K I ITN+TCGPGHGIS+GSLG+Y  E+ V G+ VK+C +  + NGVRIK
Sbjct: 179 DDCISLGDGSKNINITNITCGPGHGISVGSLGRYKNEESVVGIYVKNCTITGSQNGVRIK 238

Query: 121 TWPDCAVAYTASDLHFEDIEMVNVSNPVIIDQEYCPSNQC 161
           TWP       AS++HF+DI M +V  P++IDQ YCP NQC
Sbjct: 239 TWPKSEPG-EASEMHFQDITMNSVGTPILIDQGYCPYNQC 277

[Close]
BLAST of Csa7G037570 vs. Swiss-Prot
Match: PGLR_TOBAC (Polygalacturonase OS=Nicotiana tabacum GN=PG1 PE=2 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 3.0e-53
Identity = 100/161 (62.11%), Postives = 118/161 (73.29%), Query Frame = 1 

Query: 2   VKDITSLDSKNFHFNLLGCKNVTFQNVTIIAPENSPNTDGIHVSSSEVINIFNTRISTGD 61
           +KDIT+LDSK+FH N+  CKN+TF    + AP NSPNTDGIHVS S  +NI ++  STGD
Sbjct: 154 IKDITTLDSKSFHVNVNQCKNLTFIRFNVSAPANSPNTDGIHVSRSSSVNITDSNFSTGD 213

Query: 62  DCISVGDSNKQITITNVTCGPGHGISIGSLGKYTKEKEVAGVTVKSCKLINTSNGVRIKT 121
           DCISVGD  +Q+ IT VTCGPGHGIS+GSLG    EK V GV V++C   NT NGVRIKT
Sbjct: 214 DCISVGDETEQLYITRVTCGPGHGISVGSLGGNPDEKPVVGVFVRNCTFTNTDNGVRIKT 273

Query: 122 WPDCAVAYTASDLHFEDIEMVNVSNPVIIDQEYCPSNQCNK 163
           WP  +     +D+HFEDI + NVSNPV+IDQ YCP N+CNK
Sbjct: 274 WP-ASHPGVVNDVHFEDIIVQNVSNPVVIDQVYCPFNKCNK 313

[Close]
BLAST of Csa7G037570 vs. TrEMBL
Match: A0A0A0K1X5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G037570 PE=3 SV=1)

HSP 1 Score: 373.6 bits (958), Expect = 1.3e-100
Identity = 181/181 (100.00%), Postives = 181/181 (100.00%), Query Frame = 1 

Query: 1   MVKDITSLDSKNFHFNLLGCKNVTFQNVTIIAPENSPNTDGIHVSSSEVINIFNTRISTG 60
           MVKDITSLDSKNFHFNLLGCKNVTFQNVTIIAPENSPNTDGIHVSSSEVINIFNTRISTG
Sbjct: 1   MVKDITSLDSKNFHFNLLGCKNVTFQNVTIIAPENSPNTDGIHVSSSEVINIFNTRISTG 60

Query: 61  DDCISVGDSNKQITITNVTCGPGHGISIGSLGKYTKEKEVAGVTVKSCKLINTSNGVRIK 120
           DDCISVGDSNKQITITNVTCGPGHGISIGSLGKYTKEKEVAGVTVKSCKLINTSNGVRIK
Sbjct: 61  DDCISVGDSNKQITITNVTCGPGHGISIGSLGKYTKEKEVAGVTVKSCKLINTSNGVRIK 120

Query: 121 TWPDCAVAYTASDLHFEDIEMVNVSNPVIIDQEYCPSNQCNKKQNPRACVEAAPVNSPST 180
           TWPDCAVAYTASDLHFEDIEMVNVSNPVIIDQEYCPSNQCNKKQNPRACVEAAPVNSPST
Sbjct: 121 TWPDCAVAYTASDLHFEDIEMVNVSNPVIIDQEYCPSNQCNKKQNPRACVEAAPVNSPST 180

Query: 181 D 182
           D
Sbjct: 181 D 181

[Close]
BLAST of Csa7G037570 vs. TrEMBL
Match: A0A0A0KPH7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G266870 PE=3 SV=1)

HSP 1 Score: 303.9 bits (777), Expect = 1.3e-79
Identity = 144/187 (77.01%), Postives = 162/187 (86.63%), Query Frame = 1 

Query: 1   MVKDITSLDSKNFHFNLLGCKNVTFQNVTIIAPENSPNTDGIHVSSSEVINIFNTRISTG 60
           +VKDITSLDSKNFH NLLGCKN+TF++VTI APENSPNTDGIH+SSSE I I NT+ISTG
Sbjct: 53  IVKDITSLDSKNFHINLLGCKNITFEHVTISAPENSPNTDGIHISSSEQIRILNTKISTG 112

Query: 61  DDCISVGDSNKQITITNVTCGPGHGISIGSLGKYTKEKEVAGVTVKSCKLINTSNGVRIK 120
           DDC+SVGDSNK ITI +VTCGPGHGISIGSLGKYTKEK V GV V  CKLI T+NGVRIK
Sbjct: 113 DDCVSVGDSNKDITIRDVTCGPGHGISIGSLGKYTKEKAVEGVWVTKCKLIKTTNGVRIK 172

Query: 121 TWPDCAVAYTASDLHFEDIEMVNVSNPVIIDQEYCPSNQCNK------KQNPRACVEAAP 180
           TWPD AV Y+ASD+HFEDIEM++VSNP++IDQEYCP NQCN+      KQNPR C EAAP
Sbjct: 173 TWPDSAVKYSASDMHFEDIEMIDVSNPILIDQEYCPWNQCNRKPIISGKQNPRICAEAAP 232

Query: 181 VNSPSTD 182
           V++PS D
Sbjct: 233 VDAPSID 239

[Close]
BLAST of Csa7G037570 vs. TrEMBL
Match: A0A0A0K6J6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G037450 PE=3 SV=1)

HSP 1 Score: 297.0 bits (759), Expect = 1.6e-77
Identity = 139/165 (84.24%), Postives = 154/165 (93.33%), Query Frame = 1 

Query: 1   MVKDITSLDSKNFHFNLLGCKNVTFQNVTIIAPENSPNTDGIHVSSSEVINIFNTRISTG 60
           +VKDITSLDSKNFH NLLGCKNVTFQ+VTI APENSPNTDGIH+SSSE INI +++ISTG
Sbjct: 84  IVKDITSLDSKNFHINLLGCKNVTFQHVTISAPENSPNTDGIHISSSEQINILDSKISTG 143

Query: 61  DDCISVGDSNKQITITNVTCGPGHGISIGSLGKYTKEKEVAGVTVKSCKLINTSNGVRIK 120
           DDC+SVGDSNKQ+TITNVTCGPGHGIS+GSLGKYTKEK+V GVTVK+CKLINT+NGVRIK
Sbjct: 144 DDCVSVGDSNKQVTITNVTCGPGHGISVGSLGKYTKEKDVVGVTVKACKLINTTNGVRIK 203

Query: 121 TWPDCAVAYTASDLHFEDIEMVNVSNPVIIDQEYCPSNQCNKKQN 166
           TWPD A A+ ASD+HFEDIEM NVSNPVIIDQEYCP NQCN+K N
Sbjct: 204 TWPDSAGAFIASDMHFEDIEMQNVSNPVIIDQEYCPWNQCNRKLN 248

[Close]
BLAST of Csa7G037570 vs. TrEMBL
Match: A0A0A0LX75_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G066500 PE=3 SV=1)

HSP 1 Score: 283.1 bits (723), Expect = 2.4e-73
Identity = 132/165 (80.00%), Postives = 148/165 (89.70%), Query Frame = 1 

Query: 1   MVKDITSLDSKNFHFNLLGCKNVTFQNVTIIAPENSPNTDGIHVSSSEVINIFNTRISTG 60
           +VKDITSLDSKN+H NLLGCKN+TF +VTI APENSPNTDGIHVSSSE INI NT I+TG
Sbjct: 60  IVKDITSLDSKNYHINLLGCKNLTFDHVTITAPENSPNTDGIHVSSSEQINILNTNIATG 119

Query: 61  DDCISVGDSNKQITITNVTCGPGHGISIGSLGKYTKEKEVAGVTVKSCKLINTSNGVRIK 120
           DDCISVGD+NKQI I++VTCGPGHGISIGSLGKYTKEKEV GVTVK CKL +T+NGVRIK
Sbjct: 120 DDCISVGDTNKQIVISDVTCGPGHGISIGSLGKYTKEKEVVGVTVKKCKLTSTTNGVRIK 179

Query: 121 TWPDCAVAYTASDLHFEDIEMVNVSNPVIIDQEYCPSNQCNKKQN 166
           TWPD    + A+D+HFEDIEM NVSNP+IIDQEYCP NQCN+K+N
Sbjct: 180 TWPDSVGTFPATDMHFEDIEMDNVSNPIIIDQEYCPWNQCNRKEN 224

[Close]
BLAST of Csa7G037570 vs. TrEMBL
Match: A0A0A0KF15_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G434410 PE=3 SV=1)

HSP 1 Score: 282.7 bits (722), Expect = 3.1e-73
Identity = 133/165 (80.61%), Postives = 147/165 (89.09%), Query Frame = 1 

Query: 1   MVKDITSLDSKNFHFNLLGCKNVTFQNVTIIAPENSPNTDGIHVSSSEVINIFNTRISTG 60
           +V  ITSLDSKNFH NLLGCKN+TF +VTI AP NSPNTDGIHVSSSE INI NT I+TG
Sbjct: 71  IVTGITSLDSKNFHINLLGCKNLTFDHVTITAPGNSPNTDGIHVSSSEQINILNTNIATG 130

Query: 61  DDCISVGDSNKQITITNVTCGPGHGISIGSLGKYTKEKEVAGVTVKSCKLINTSNGVRIK 120
           DDCISVGDSNKQ+ I++VTCGPGHGISIGSLGKYTKEKEV GVTVK CKL  T+NGVRIK
Sbjct: 131 DDCISVGDSNKQVAISDVTCGPGHGISIGSLGKYTKEKEVVGVTVKKCKLTGTTNGVRIK 190

Query: 121 TWPDCAVAYTASDLHFEDIEMVNVSNPVIIDQEYCPSNQCNKKQN 166
           TWPD AVA+ A+D+HFEDIEM NVSNP+IIDQEYCP NQCN+K+N
Sbjct: 191 TWPDSAVAFPATDMHFEDIEMDNVSNPIIIDQEYCPWNQCNRKEN 235

[Close]
BLAST of Csa7G037570 vs. TAIR10
Match: AT3G07840.1 (AT3G07840.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 228.4 bits (581), Expect = 3.5e-60
Identity = 101/163 (61.96%), Postives = 128/163 (78.53%), Query Frame = 1 

Query: 2   VKDITSLDSKNFHFNLLGCKNVTFQNVTIIAPENSPNTDGIHVSSSEVINIFNTRISTGD 61
           ++DI+S+D+KNFH N+LG KN+TF NV +IAP  SPNTDGIH+  SE + I N++I+TGD
Sbjct: 152 IRDISSIDAKNFHINVLGAKNMTFDNVKVIAPAESPNTDGIHLGRSEGVKILNSKIATGD 211

Query: 62  DCISVGDSNKQITITNVTCGPGHGISIGSLGKYTKEKEVAGVTVKSCKLINTSNGVRIKT 121
           DCISVGD  K + + NV CGPGHGIS+GSLG+Y  E++V G+TV +C L  T NG+RIKT
Sbjct: 212 DCISVGDGMKNLHVENVMCGPGHGISVGSLGRYVHEQDVTGITVVNCTLQGTDNGLRIKT 271

Query: 122 WPDCAVAYTASDLHFEDIEMVNVSNPVIIDQEYCPSNQCNKKQ 165
           WP  A A TAS +HFE+I + NVSNP++IDQEYCP NQCNK++
Sbjct: 272 WPSAACATTASGIHFENIILNNVSNPILIDQEYCPWNQCNKQK 314

[Close]
BLAST of Csa7G037570 vs. TAIR10
Match: AT3G07820.1 (AT3G07820.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 225.3 bits (573), Expect = 3.0e-59
Identity = 99/163 (60.74%), Postives = 129/163 (79.14%), Query Frame = 1 

Query: 2   VKDITSLDSKNFHFNLLGCKNVTFQNVTIIAPENSPNTDGIHVSSSEVINIFNTRISTGD 61
           ++DI+S+D+KNFH N+LG KN+T  N+ I+APE+SPNTDGIH+  S+ + I N+ ISTGD
Sbjct: 151 IRDISSIDAKNFHINVLGAKNMTMNNIKIVAPEDSPNTDGIHLGRSDGVKILNSFISTGD 210

Query: 62  DCISVGDSNKQITITNVTCGPGHGISIGSLGKYTKEKEVAGVTVKSCKLINTSNGVRIKT 121
           DCISVGD  K + +  VTCGPGHGIS+GSLG+Y  E++V+G+ V +C L  T NG+RIKT
Sbjct: 211 DCISVGDGMKNLHVEKVTCGPGHGISVGSLGRYGHEQDVSGIKVINCTLQETDNGLRIKT 270

Query: 122 WPDCAVAYTASDLHFEDIEMVNVSNPVIIDQEYCPSNQCNKKQ 165
           WP  A + TASD+HFEDI + +VSNP++IDQEYCP NQCNK++
Sbjct: 271 WPSAACSTTASDIHFEDIILKDVSNPILIDQEYCPWNQCNKQK 313

[Close]
BLAST of Csa7G037570 vs. TAIR10
Match: AT5G48140.1 (AT5G48140.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 224.2 bits (570), Expect = 6.7e-59
Identity = 101/163 (61.96%), Postives = 128/163 (78.53%), Query Frame = 1 

Query: 2   VKDITSLDSKNFHFNLLGCKNVTFQNVTIIAPENSPNTDGIHVSSSEVINIFNTRISTGD 61
           ++ ITSLD+K+FH N++G KNVTF++V IIAP  SPNTDGIHV  S+ I I N+ ISTGD
Sbjct: 151 IRGITSLDAKHFHINVIGAKNVTFEDVKIIAPAESPNTDGIHVGRSDGIKIINSFISTGD 210

Query: 62  DCISVGDSNKQITITNVTCGPGHGISIGSLGKYTKEKEVAGVTVKSCKLINTSNGVRIKT 121
           DC+SVGD  K + +  VTCGPGHGISIGSLG+Y+ E+ V+G+ + +C L  T NG+RIKT
Sbjct: 211 DCVSVGDGMKNLLVERVTCGPGHGISIGSLGRYSHEENVSGIKIINCTLQETDNGLRIKT 270

Query: 122 WPDCAVAYTASDLHFEDIEMVNVSNPVIIDQEYCPSNQCNKKQ 165
           WP  A   TASD+HFE+I + NVSNP++IDQEYCP NQCNK++
Sbjct: 271 WPSAACTTTASDIHFENILLKNVSNPILIDQEYCPWNQCNKQK 313

[Close]
BLAST of Csa7G037570 vs. TAIR10
Match: AT3G07830.1 (AT3G07830.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 221.5 bits (563), Expect = 4.3e-58
Identity = 97/164 (59.15%), Postives = 129/164 (78.66%), Query Frame = 1 

Query: 2   VKDITSLDSKNFHFNLLGCKNVTFQNVTIIAPENSPNTDGIHVSSSEVINIFNTRISTGD 61
           ++DI+S+D+KNFH N++G KN+TF NV I+AP  SPNTDGIH+  S  ++I N+RISTGD
Sbjct: 152 IRDISSIDAKNFHINVIGAKNMTFDNVKIMAPAESPNTDGIHLGRSVGVSIINSRISTGD 211

Query: 62  DCISVGDSNKQITITNVTCGPGHGISIGSLGKYTKEKEVAGVTVKSCKLINTSNGVRIKT 121
           DC+SVGD    + + NV CGPGHGIS+GSLG+Y  E++V+G+ V +C L  T NG+RIKT
Sbjct: 212 DCVSVGDGMVNLLVKNVVCGPGHGISVGSLGRYGHEQDVSGIRVINCTLQETDNGLRIKT 271

Query: 122 WPDCAVAYTASDLHFEDIEMVNVSNPVIIDQEYCPSNQCNKKQN 166
           WP  A + TAS++HFE+I + NVSNP++IDQEYCP NQCNK+++
Sbjct: 272 WPSAACSTTASNIHFENIILRNVSNPILIDQEYCPWNQCNKQKS 315

[Close]
BLAST of Csa7G037570 vs. TAIR10
Match: AT3G07850.1 (AT3G07850.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 189.1 bits (479), Expect = 2.4e-48
Identity = 88/159 (55.35%), Postives = 108/159 (67.92%), Query Frame = 1 

Query: 2   VKDITSLDSKNFHFNLLGCKNVTFQNVTIIAPENSPNTDGIHVSSSEVINIFNTRISTGD 61
           +  ITS +SK FH N+L CKN+T  ++ I AP  S NTDGIH+  S  +N+   +I TGD
Sbjct: 202 INSITSTNSKLFHMNILNCKNITLSDIGIDAPPESLNTDGIHIGRSNGVNLIGAKIKTGD 261

Query: 62  DCISVGDSNKQITITNVTCGPGHGISIGSLGKYTKEKEVAGVTVKSCKLINTSNGVRIKT 121
           DC+S+GD  + + + NV CGPGHGISIGSLG+Y  E+ V GVTV+ C + NT NGVRIKT
Sbjct: 262 DCVSIGDGTENLIVENVECGPGHGISIGSLGRYPNEQPVKGVTVRKCLIKNTDNGVRIKT 321

Query: 122 WPDCAVAYTASDLHFEDIEMVNVSNPVIIDQEYCPSNQC 161
           WP       AS++ FEDI M NVS PV+IDQEYCP   C
Sbjct: 322 WPGSPPG-IASNILFEDITMDNVSLPVLIDQEYCPYGHC 359

[Close]
BLAST of Csa7G037570 vs. NCBI nr
Match: gi|700188220|gb|KGN43453.1| (hypothetical protein Csa_7G037570 [Cucumis sativus])

HSP 1 Score: 373.6 bits (958), Expect = 1.9e-100
Identity = 181/181 (100.00%), Postives = 181/181 (100.00%), Query Frame = 1 

Query: 1   MVKDITSLDSKNFHFNLLGCKNVTFQNVTIIAPENSPNTDGIHVSSSEVINIFNTRISTG 60
           MVKDITSLDSKNFHFNLLGCKNVTFQNVTIIAPENSPNTDGIHVSSSEVINIFNTRISTG
Sbjct: 1   MVKDITSLDSKNFHFNLLGCKNVTFQNVTIIAPENSPNTDGIHVSSSEVINIFNTRISTG 60

Query: 61  DDCISVGDSNKQITITNVTCGPGHGISIGSLGKYTKEKEVAGVTVKSCKLINTSNGVRIK 120
           DDCISVGDSNKQITITNVTCGPGHGISIGSLGKYTKEKEVAGVTVKSCKLINTSNGVRIK
Sbjct: 61  DDCISVGDSNKQITITNVTCGPGHGISIGSLGKYTKEKEVAGVTVKSCKLINTSNGVRIK 120

Query: 121 TWPDCAVAYTASDLHFEDIEMVNVSNPVIIDQEYCPSNQCNKKQNPRACVEAAPVNSPST 180
           TWPDCAVAYTASDLHFEDIEMVNVSNPVIIDQEYCPSNQCNKKQNPRACVEAAPVNSPST
Sbjct: 121 TWPDCAVAYTASDLHFEDIEMVNVSNPVIIDQEYCPSNQCNKKQNPRACVEAAPVNSPST 180

Query: 181 D 182
           D
Sbjct: 181 D 181

[Close]
BLAST of Csa7G037570 vs. NCBI nr
Match: gi|778723597|ref|XP_011658677.1| (PREDICTED: exopolygalacturonase-like [Cucumis sativus])

HSP 1 Score: 336.7 bits (862), Expect = 2.6e-89
Identity = 163/163 (100.00%), Postives = 163/163 (100.00%), Query Frame = 1 

Query: 1   MVKDITSLDSKNFHFNLLGCKNVTFQNVTIIAPENSPNTDGIHVSSSEVINIFNTRISTG 60
           MVKDITSLDSKNFHFNLLGCKNVTFQNVTIIAPENSPNTDGIHVSSSEVINIFNTRISTG
Sbjct: 213 MVKDITSLDSKNFHFNLLGCKNVTFQNVTIIAPENSPNTDGIHVSSSEVINIFNTRISTG 272

Query: 61  DDCISVGDSNKQITITNVTCGPGHGISIGSLGKYTKEKEVAGVTVKSCKLINTSNGVRIK 120
           DDCISVGDSNKQITITNVTCGPGHGISIGSLGKYTKEKEVAGVTVKSCKLINTSNGVRIK
Sbjct: 273 DDCISVGDSNKQITITNVTCGPGHGISIGSLGKYTKEKEVAGVTVKSCKLINTSNGVRIK 332

Query: 121 TWPDCAVAYTASDLHFEDIEMVNVSNPVIIDQEYCPSNQCNKK 164
           TWPDCAVAYTASDLHFEDIEMVNVSNPVIIDQEYCPSNQCNKK
Sbjct: 333 TWPDCAVAYTASDLHFEDIEMVNVSNPVIIDQEYCPSNQCNKK 375

[Close]
BLAST of Csa7G037570 vs. NCBI nr
Match: gi|778723597|ref|XP_011658677.1| (PREDICTED: exopolygalacturonase-like [Cucumis sativus])

HSP 1 Score: 45.4 bits (106), Expect = 1.2e-01
Identity = 25/64 (39.06%), Postives = 34/64 (53.12%), Query Frame = 1 

Query: 125 CAVAYTASDLHFEDIEMVNVSNPVIIDQEYCPSNQCNK-------KQNPRACVEAAPVNS 182
           C+  ++   +   DI++  +     I      ++QC         KQNPRACVEAAPVNS
Sbjct: 404 CSTVFSCEGVEVTDIDLAYIGTQGRI------TSQCRNVIPIITGKQNPRACVEAAPVNS 461


HSP 2 Score: 309.3 bits (791), Expect = 4.5e-81
Identity = 148/163 (90.80%), Postives = 154/163 (94.48%), Query Frame = 1 

Query: 1   MVKDITSLDSKNFHFNLLGCKNVTFQNVTIIAPENSPNTDGIHVSSSEVINIFNTRISTG 60
           +VKDITSLDSKNFH NLL CKNVTFQNVTIIAPE SPNTDGIHVS+SE INI NT+ISTG
Sbjct: 154 IVKDITSLDSKNFHINLLSCKNVTFQNVTIIAPEKSPNTDGIHVSNSEEINILNTKISTG 213

Query: 61  DDCISVGDSNKQITITNVTCGPGHGISIGSLGKYTKEKEVAGVTVKSCKLINTSNGVRIK 120
           DDC+SVGD NKQITITNVTCGPGHGISIGSLGKYT EKEVAGVTVKSC LINTSNGVRIK
Sbjct: 214 DDCVSVGDGNKQITITNVTCGPGHGISIGSLGKYTTEKEVAGVTVKSCNLINTSNGVRIK 273

Query: 121 TWPDCAVAYTASDLHFEDIEMVNVSNPVIIDQEYCPSNQCNKK 164
           +WPD AVAYTASDLHFEDIEMVNVSNP+IIDQEYCPSNQCNKK
Sbjct: 274 SWPDSAVAYTASDLHFEDIEMVNVSNPIIIDQEYCPSNQCNKK 316

[Close]
BLAST of Csa7G037570 vs. NCBI nr
Match: gi|659110970|ref|XP_008455507.1| (PREDICTED: exopolygalacturonase-like [Cucumis melo])

HSP 1 Score: 43.1 bits (100), Expect = 6.0e-01
Identity = 24/58 (41.38%), Postives = 33/58 (56.90%), Query Frame = 1 

Query: 131 ASDLHFEDIEMVNVSNPVIIDQEYCPSNQCNK-------KQNPRACVEAAPVNSPSTD 182
           + DL  +D+E+ +++      Q    S QC         KQNPRAC+E AP+NSPSTD
Sbjct: 346 SKDLPCDDVEVADINLSYTGTQGRITS-QCRNVIPIITGKQNPRACIEVAPINSPSTD 402


HSP 2 Score: 303.9 bits (777), Expect = 1.9e-79
Identity = 144/187 (77.01%), Postives = 162/187 (86.63%), Query Frame = 1 

Query: 1   MVKDITSLDSKNFHFNLLGCKNVTFQNVTIIAPENSPNTDGIHVSSSEVINIFNTRISTG 60
           +VKDITSLDSKNFH NLLGCKN+TF++VTI APENSPNTDGIH+SSSE I I NT+ISTG
Sbjct: 53  IVKDITSLDSKNFHINLLGCKNITFEHVTISAPENSPNTDGIHISSSEQIRILNTKISTG 112

Query: 61  DDCISVGDSNKQITITNVTCGPGHGISIGSLGKYTKEKEVAGVTVKSCKLINTSNGVRIK 120
           DDC+SVGDSNK ITI +VTCGPGHGISIGSLGKYTKEK V GV V  CKLI T+NGVRIK
Sbjct: 113 DDCVSVGDSNKDITIRDVTCGPGHGISIGSLGKYTKEKAVEGVWVTKCKLIKTTNGVRIK 172

Query: 121 TWPDCAVAYTASDLHFEDIEMVNVSNPVIIDQEYCPSNQCNK------KQNPRACVEAAP 180
           TWPD AV Y+ASD+HFEDIEM++VSNP++IDQEYCP NQCN+      KQNPR C EAAP
Sbjct: 173 TWPDSAVKYSASDMHFEDIEMIDVSNPILIDQEYCPWNQCNRKPIISGKQNPRICAEAAP 232

Query: 181 VNSPSTD 182
           V++PS D
Sbjct: 233 VDAPSID 239

[Close]
BLAST of Csa7G037570 vs. NCBI nr
Match: gi|700188208|gb|KGN43441.1| (hypothetical protein Csa_7G037450 [Cucumis sativus])

HSP 1 Score: 297.0 bits (759), Expect = 2.3e-77
Identity = 139/165 (84.24%), Postives = 154/165 (93.33%), Query Frame = 1 

Query: 1   MVKDITSLDSKNFHFNLLGCKNVTFQNVTIIAPENSPNTDGIHVSSSEVINIFNTRISTG 60
           +VKDITSLDSKNFH NLLGCKNVTFQ+VTI APENSPNTDGIH+SSSE INI +++ISTG
Sbjct: 84  IVKDITSLDSKNFHINLLGCKNVTFQHVTISAPENSPNTDGIHISSSEQINILDSKISTG 143

Query: 61  DDCISVGDSNKQITITNVTCGPGHGISIGSLGKYTKEKEVAGVTVKSCKLINTSNGVRIK 120
           DDC+SVGDSNKQ+TITNVTCGPGHGIS+GSLGKYTKEK+V GVTVK+CKLINT+NGVRIK
Sbjct: 144 DDCVSVGDSNKQVTITNVTCGPGHGISVGSLGKYTKEKDVVGVTVKACKLINTTNGVRIK 203

Query: 121 TWPDCAVAYTASDLHFEDIEMVNVSNPVIIDQEYCPSNQCNKKQN 166
           TWPD A A+ ASD+HFEDIEM NVSNPVIIDQEYCP NQCN+K N
Sbjct: 204 TWPDSAGAFIASDMHFEDIEMQNVSNPVIIDQEYCPWNQCNRKLN 248

The following BLAST results are available for this feature:
BLAST of Csa7G037570 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PGLR_MEDSA6.3e-5963.25Polygalacturonase OS=Medicago sativa PE=2 SV=1[more]
PGLR_BRANA9.0e-5861.96Polygalacturonase OS=Brassica napus PE=2 SV=1[more]
PGLR2_PLAAC3.6e-5459.28Exopolygalacturonase (Fragment) OS=Platanus acerifolia GN=plaa2 PE=1 SV=1[more]
PGLR_OENOR3.0e-5358.13Exopolygalacturonase (Fragment) OS=Oenothera organensis PE=2 SV=1[more]
PGLR_TOBAC3.0e-5362.11Polygalacturonase OS=Nicotiana tabacum GN=PG1 PE=2 SV=1[more]
BLAST of Csa7G037570 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K1X5_CUCSA1.3e-100100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_7G037570 PE=3 SV=1[more]
A0A0A0KPH7_CUCSA1.3e-7977.01Uncharacterized protein OS=Cucumis sativus GN=Csa_5G266870 PE=3 SV=1[more]
A0A0A0K6J6_CUCSA1.6e-7784.24Uncharacterized protein OS=Cucumis sativus GN=Csa_7G037450 PE=3 SV=1[more]
A0A0A0LX75_CUCSA2.4e-7380.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G066500 PE=3 SV=1[more]
A0A0A0KF15_CUCSA3.1e-7380.61Uncharacterized protein OS=Cucumis sativus GN=Csa_6G434410 PE=3 SV=1[more]
BLAST of Csa7G037570 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G07840.13.5e-6061.96 Pectin lyase-like superfamily protein[more]
AT3G07820.13.0e-5960.74 Pectin lyase-like superfamily protein[more]
AT5G48140.16.7e-5961.96 Pectin lyase-like superfamily protein[more]
AT3G07830.14.3e-5859.15 Pectin lyase-like superfamily protein[more]
AT3G07850.12.4e-4855.35 Pectin lyase-like superfamily protein[more]
BLAST of Csa7G037570 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700188220|gb|KGN43453.1|1.9e-100100.00hypothetical protein Csa_7G037570 [Cucumis sativus][more]
gi|778723597|ref|XP_011658677.1|2.6e-89100.00PREDICTED: exopolygalacturonase-like [Cucumis sativus][more]
gi|778723597|ref|XP_011658677.1|1.2e-0139.06PREDICTED: exopolygalacturonase-like [Cucumis sativus][more]
gi|659110970|ref|XP_008455507.1|6.0e-0141.38PREDICTED: exopolygalacturonase-like [Cucumis melo][more]
gi|700188208|gb|KGN43441.1|2.3e-7784.24hypothetical protein Csa_7G037450 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000743Glyco_hydro_28
IPR006626PbH1
IPR011050Pectin_lyase_fold/virulence
IPR012334Pectin_lyas_fold
Vocabulary: Molecular Function
TermDefinition
GO:0004650polygalacturonase activity
Vocabulary: Biological Process
TermDefinition
GO:0005975carbohydrate metabolic process
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0071555 cell wall organization
biological_process GO:0009094 L-phenylalanine biosynthetic process
biological_process GO:0005982 starch metabolic process
biological_process GO:0005985 sucrose metabolic process
biological_process GO:0000162 tryptophan biosynthetic process
biological_process GO:0006571 tyrosine biosynthetic process
biological_process GO:0005975 carbohydrate metabolic process
cellular_component GO:0005576 extracellular region
cellular_component GO:0005575 cellular_component
molecular_function GO:0004106 chorismate mutase activity
molecular_function GO:0004650 polygalacturonase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa7G037570.1Csa7G037570.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000743Glycoside hydrolase, family 28PFAMPF00295Glyco_hydro_28coord: 2..165
score: 4.4
IPR000743Glycoside hydrolase, family 28PROSITEPS00502POLYGALACTURONASEcoord: 77..90
scor
IPR006626Parallel beta-helix repeatSMARTSM00710pbh1coord: 20..46
score: 2.3coord: 100..121
score: 17.0coord: 70..90
score: 3500.0coord: 131..152
score: 6800.0coord: 47..68
score: 34
IPR011050Pectin lyase fold/virulence factorunknownSSF51126Pectin lyase-likecoord: 2..165
score: 9.9
IPR012334Pectin lyase foldGENE3DG3DSA:2.160.20.10coord: 2..165
score: 1.6
NoneNo IPR availablePANTHERPTHR31375FAMILY NOT NAMEDcoord: 1..166
score: 3.8E
NoneNo IPR availablePANTHERPTHR31375:SF37PECTIN LYASE-LIKE SUPERFAMILY PROTEIN-RELATEDcoord: 1..166
score: 3.8E