Csa7G024110 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa7G024110
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionNodule inception protein
LocationChr7 : 1308331 .. 1308747 (+)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGGCAACATGGATAACAAGGTGCCCTTCCAGAAAGATCAAGAAAGTAGGTCATTATTCTCTCAGCAAACTCCAGCTCGTGGTCGACTCAGTTCAAGGTGCTGATGGTTCGATACAGATTGGGACTTTCTATGAAAGCTTCCCACAATTGAACAATCCCAGTTTTCCTGATACTGACCATTGTTCATCCACGATGGTGAGAGACCATCAGAGGCAATAAACTATCAAGTTGGCAATGGCTCGTTCAGCCATCGACCCCATGCAAAGTCCCCATTCTCTTCATGTACTCAGACTTCTGGTTCAGGCAGTCAGTGCCCTACCGGAGCAAGGCAACATACCAACTGCCACCACTATTAACACCTCAAATGGTGGACATGTATTAATGCTCCATGTCAAGAGGACCCAAAGATTCTGA

mRNA sequence

ATGCAGGCAACATGGATAACAAGGTGCCCTTCCAGAAAGATCAAGAAAGTAGGTCATTATTCTCTCAGCAAACTCCAGCTCGTGGTCGACTCAGTTCAAGGTGCTGATGGTTCGATACAGATTGGGACTTTCTATGAAAGCTTCCCACAATTGAACAATCCCAGTTTTCCTGATACTGACCATTGTTCATCCACGATGGCAGTCAGTGCCCTACCGGAGCAAGGCAACATACCAACTGCCACCACTATTAACACCTCAAATGGTGGACATGTATTAATGCTCCATGTCAAGAGGACCCAAAGATTCTGA

Coding sequence (CDS)

ATGCAGGCAACATGGATAACAAGGTGCCCTTCCAGAAAGATCAAGAAAGTAGGTCATTATTCTCTCAGCAAACTCCAGCTCGTGGTCGACTCAGTTCAAGGTGCTGATGGTTCGATACAGATTGGGACTTTCTATGAAAGCTTCCCACAATTGAACAATCCCAGTTTTCCTGATACTGACCATTGTTCATCCACGATGGCAGTCAGTGCCCTACCGGAGCAAGGCAACATACCAACTGCCACCACTATTAACACCTCAAATGGTGGACATGTATTAATGCTCCATGTCAAGAGGACCCAAAGATTCTGA

Protein sequence

MQATWITRCPSRKIKKVGHYSLSKLQLVVDSVQGADGSIQIGTFYESFPQLNNPSFPDTDHCSSTMAVSALPEQGNIPTATTINTSNGGHVLMLHVKRTQRF*
Homology
[Close]
BLAST of Csa7G024110 vs. Swiss-Prot
Match: NLP1_ARATH (Protein NLP1 OS=Arabidopsis thaliana GN=NLP1 PE=2 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 1.9e-12
Identity = 37/50 (74.00%), Postives = 41/50 (82.00%), Query Frame = 1 

Query: 6   ITRCPSRKIKKVGHYSLSKLQLVVDSVQGADGSIQIGTFYESFPQLNNPS 56
           I R PSRKIKKVGH SL KLQLV+DSVQGA GSIQ+ +FY SFP+LN+P+
Sbjct: 645 IMRWPSRKIKKVGH-SLKKLQLVMDSVQGAQGSIQLDSFYTSFPELNSPN 693

[Close]
BLAST of Csa7G024110 vs. Swiss-Prot
Match: NLP2_ARATH (Protein NLP2 OS=Arabidopsis thaliana GN=NLP2 PE=2 SV=3)

HSP 1 Score: 73.2 bits (178), Expect = 1.9e-12
Identity = 37/54 (68.52%), Postives = 41/54 (75.93%), Query Frame = 1 

Query: 6   ITRCPSRKIKKVGHYSLSKLQLVVDSVQGADGSIQIGTFYESFPQLNNPSFPDT 60
           ITR PSRKIKKVGH SL KLQLV+DSVQG  GSIQ+ +FY SFP+L++P    T
Sbjct: 685 ITRWPSRKIKKVGH-SLKKLQLVIDSVQGVQGSIQLDSFYTSFPELSSPHMSGT 737

[Close]
BLAST of Csa7G024110 vs. Swiss-Prot
Match: NLP3_ARATH (Protein NLP3 OS=Arabidopsis thaliana GN=NLP3 PE=2 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 8.0e-11
Identity = 38/83 (45.78%), Postives = 52/83 (62.65%), Query Frame = 1 

Query: 6   ITRCPSRKIKKVGHYSLSKLQLVVDSVQGADGSIQIGTFYESFPQLNNPSFPDTDHCSST 65
           I+R PSRKIKKVGH SL KLQ+V+DSV+G  GS+ + +FY SFPQL + S       + T
Sbjct: 535 ISRWPSRKIKKVGH-SLRKLQVVMDSVEGVQGSLHLASFYSSFPQLQSSSSSSFPFINPT 594

Query: 66  MAVSALPEQGNIPTATTINTSNG 89
             V   P+  + P+++   +S+G
Sbjct: 595 QTVHVPPK--SPPSSSGSQSSSG 614

[Close]
BLAST of Csa7G024110 vs. Swiss-Prot
Match: NLP4_ARATH (Protein NLP4 OS=Arabidopsis thaliana GN=NLP4 PE=2 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 3.4e-09
Identity = 35/82 (42.68%), Postives = 46/82 (56.10%), Query Frame = 1 

Query: 6   ITRCPSRKIKKVGHYSLSKLQLVVDSVQGADGSIQIGTFYESFPQLNNPSFPDTDHCSST 65
           I R PSRKIKKVGH SL K+Q V+DSVQG  G + IG+FY +FP L + S   +    +T
Sbjct: 595 IQRWPSRKIKKVGH-SLQKIQRVIDSVQGVSGPLPIGSFYANFPNLVSQSQEPSQQAKTT 654

Query: 66  MAVSALPEQGNIPTATTINTSN 88
                  +    P ++  ++SN
Sbjct: 655 PPPPPPVQLAKSPVSSYSHSSN 675

[Close]
BLAST of Csa7G024110 vs. Swiss-Prot
Match: NLP1_ORYSJ (Protein NLP1 OS=Oryza sativa subsp. japonica GN=NLP1 PE=2 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.1e-07
Identity = 27/43 (62.79%), Postives = 33/43 (76.74%), Query Frame = 1 

Query: 6   ITRCPSRKIKKVGHYSLSKLQLVVDSVQGADGSIQIGTFYESF 49
           I R PSRKIKKVGH SL KLQ+V+DSV G +G++Q+ + YE+F
Sbjct: 659 INRWPSRKIKKVGH-SLKKLQMVIDSVHGPEGTVQLSSLYENF 700

[Close]
BLAST of Csa7G024110 vs. TrEMBL
Match: A0A0A0K676_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G024110 PE=4 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 6.5e-52
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 1 

Query: 1   MQATWITRCPSRKIKKVGHYSLSKLQLVVDSVQGADGSIQIGTFYESFPQLNNPSFPDTD 60
           MQATWITRCPSRKIKKVGHYSLSKLQLVVDSVQGADGSIQIGTFYESFPQLNNPSFPDTD
Sbjct: 1   MQATWITRCPSRKIKKVGHYSLSKLQLVVDSVQGADGSIQIGTFYESFPQLNNPSFPDTD 60

Query: 61  HCSSTMAVSALPEQGNIPTATTINTSNGGHVLMLHVKRTQRF 103
           HCSSTMAVSALPEQGNIPTATTINTSNGGHVLMLHVKRTQRF
Sbjct: 61  HCSSTMAVSALPEQGNIPTATTINTSNGGHVLMLHVKRTQRF 102

[Close]
BLAST of Csa7G024110 vs. TrEMBL
Match: V4U8W2_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10027765mg PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 1.9e-14
Identity = 47/75 (62.67%), Postives = 57/75 (76.00%), Query Frame = 1 

Query: 6   ITRCPSRKIKKVGHYSLSKLQLVVDSVQGADGSIQIGTFYESFPQLNNPSFPDTDHCSST 65
           ITR PSRKIKKVGH SL KLQLV+DSVQGA+G+IQIG+FY +FP LN+P+F  +   SS 
Sbjct: 664 ITRWPSRKIKKVGH-SLRKLQLVIDSVQGAEGAIQIGSFYTTFPDLNSPNFSGSGTFSS- 723

Query: 66  MAVSALPEQGNIPTA 81
           M ++  PE  N P A
Sbjct: 724 MKINDHPEPSNAPPA 736

[Close]
BLAST of Csa7G024110 vs. TrEMBL
Match: A0A0D2PNI4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G041100 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 2.1e-13
Identity = 43/72 (59.72%), Postives = 55/72 (76.39%), Query Frame = 1 

Query: 6   ITRCPSRKIKKVGHYSLSKLQLVVDSVQGADGSIQIGTFYESFPQLNNPSFPDTDHCSST 65
           ITR PSRKIKKVGH SL KLQLV+DSVQGA+G+IQIG+FY SFP+L++P+F      SS 
Sbjct: 668 ITRWPSRKIKKVGH-SLRKLQLVIDSVQGAEGAIQIGSFYSSFPELSSPNFSGKGPSSSK 727

Query: 66  MAVSALPEQGNI 78
           ++  + P +  I
Sbjct: 728 ISNQSKPSEPQI 738

[Close]
BLAST of Csa7G024110 vs. TrEMBL
Match: M5VGP2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa018195mg PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 2.7e-13
Identity = 42/59 (71.19%), Postives = 48/59 (81.36%), Query Frame = 1 

Query: 6   ITRCPSRKIKKVGHYSLSKLQLVVDSVQGADGSIQIGTFYESFPQLNNPSFPDTDHCSS 65
           ITR PSRKIKKVGH SL KLQLV+DSVQGA+G+I IG+FY SFP+LN P FP +   SS
Sbjct: 599 ITRWPSRKIKKVGH-SLKKLQLVIDSVQGAEGAIHIGSFYSSFPELNFPKFPGSGQYSS 656

[Close]
BLAST of Csa7G024110 vs. TrEMBL
Match: A0A022RCG9_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a000964mg PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 3.5e-13
Identity = 44/91 (48.35%), Postives = 62/91 (68.13%), Query Frame = 1 

Query: 6   ITRCPSRKIKKVGHYSLSKLQLVVDSVQGADGSIQIGTFYESFPQLNNPSFPDTDHCSST 65
           ITR PSRKIKKVGH SL KLQLV+DSVQGA+GSIQ+ +FY +FP+L +P+ P + H S++
Sbjct: 648 ITRWPSRKIKKVGH-SLKKLQLVIDSVQGAEGSIQLSSFYNNFPELVSPNVPGSSHLSTS 707

Query: 66  MAVSALPEQGN------IPTATTINTSNGGH 91
                +  + +        TA+  ++S+G H
Sbjct: 708 KMSGQVKTRADGTLLSPTTTASKSSSSSGSH 737

[Close]
BLAST of Csa7G024110 vs. TAIR10
Match: AT2G17150.1 (AT2G17150.1 Plant regulator RWP-RK family protein)

HSP 1 Score: 73.2 bits (178), Expect = 1.1e-13
Identity = 37/50 (74.00%), Postives = 41/50 (82.00%), Query Frame = 1 

Query: 6   ITRCPSRKIKKVGHYSLSKLQLVVDSVQGADGSIQIGTFYESFPQLNNPS 56
           I R PSRKIKKVGH SL KLQLV+DSVQGA GSIQ+ +FY SFP+LN+P+
Sbjct: 645 IMRWPSRKIKKVGH-SLKKLQLVMDSVQGAQGSIQLDSFYTSFPELNSPN 693

[Close]
BLAST of Csa7G024110 vs. TAIR10
Match: AT4G35270.1 (AT4G35270.1 Plant regulator RWP-RK family protein)

HSP 1 Score: 73.2 bits (178), Expect = 1.1e-13
Identity = 37/54 (68.52%), Postives = 41/54 (75.93%), Query Frame = 1 

Query: 6   ITRCPSRKIKKVGHYSLSKLQLVVDSVQGADGSIQIGTFYESFPQLNNPSFPDT 60
           ITR PSRKIKKVGH SL KLQLV+DSVQG  GSIQ+ +FY SFP+L++P    T
Sbjct: 685 ITRWPSRKIKKVGH-SLKKLQLVIDSVQGVQGSIQLDSFYTSFPELSSPHMSGT 737

[Close]
BLAST of Csa7G024110 vs. TAIR10
Match: AT4G38340.1 (AT4G38340.1 Plant regulator RWP-RK family protein)

HSP 1 Score: 67.8 bits (164), Expect = 4.5e-12
Identity = 38/83 (45.78%), Postives = 52/83 (62.65%), Query Frame = 1 

Query: 6   ITRCPSRKIKKVGHYSLSKLQLVVDSVQGADGSIQIGTFYESFPQLNNPSFPDTDHCSST 65
           I+R PSRKIKKVGH SL KLQ+V+DSV+G  GS+ + +FY SFPQL + S       + T
Sbjct: 535 ISRWPSRKIKKVGH-SLRKLQVVMDSVEGVQGSLHLASFYSSFPQLQSSSSSSFPFINPT 594

Query: 66  MAVSALPEQGNIPTATTINTSNG 89
             V   P+  + P+++   +S+G
Sbjct: 595 QTVHVPPK--SPPSSSGSQSSSG 614

[Close]
BLAST of Csa7G024110 vs. TAIR10
Match: AT1G20640.1 (AT1G20640.1 Plant regulator RWP-RK family protein)

HSP 1 Score: 62.4 bits (150), Expect = 1.9e-10
Identity = 35/82 (42.68%), Postives = 46/82 (56.10%), Query Frame = 1 

Query: 6   ITRCPSRKIKKVGHYSLSKLQLVVDSVQGADGSIQIGTFYESFPQLNNPSFPDTDHCSST 65
           I R PSRKIKKVGH SL K+Q V+DSVQG  G + IG+FY +FP L + S   +    +T
Sbjct: 595 IQRWPSRKIKKVGH-SLQKIQRVIDSVQGVSGPLPIGSFYANFPNLVSQSQEPSQQAKTT 654

Query: 66  MAVSALPEQGNIPTATTINTSN 88
                  +    P ++  ++SN
Sbjct: 655 PPPPPPVQLAKSPVSSYSHSSN 675

[Close]
BLAST of Csa7G024110 vs. TAIR10
Match: AT1G76350.1 (AT1G76350.1 Plant regulator RWP-RK family protein)

HSP 1 Score: 55.8 bits (133), Expect = 1.8e-08
Identity = 35/75 (46.67%), Postives = 43/75 (57.33%), Query Frame = 1 

Query: 6   ITRCPSRKIKKVGHYSLSKLQLVVDSVQGADG-SIQIGTFYESFPQLNNPSFPDTDHCSS 65
           I R PSRKIKKVGH SL K+Q V+DSV+G  G  + IG+FY SFP L           ++
Sbjct: 586 IQRWPSRKIKKVGH-SLQKIQRVIDSVEGVSGHHLPIGSFYASFPNL-----------AA 645

Query: 66  TMAVSALPEQGNIPT 80
           +   S+L +Q  I T
Sbjct: 646 SPEASSLQQQSKITT 648

[Close]
BLAST of Csa7G024110 vs. NCBI nr
Match: gi|700188103|gb|KGN43336.1| (hypothetical protein Csa_7G024110 [Cucumis sativus])

HSP 1 Score: 211.1 bits (536), Expect = 9.4e-52
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 1 

Query: 1   MQATWITRCPSRKIKKVGHYSLSKLQLVVDSVQGADGSIQIGTFYESFPQLNNPSFPDTD 60
           MQATWITRCPSRKIKKVGHYSLSKLQLVVDSVQGADGSIQIGTFYESFPQLNNPSFPDTD
Sbjct: 1   MQATWITRCPSRKIKKVGHYSLSKLQLVVDSVQGADGSIQIGTFYESFPQLNNPSFPDTD 60

Query: 61  HCSSTMAVSALPEQGNIPTATTINTSNGGHVLMLHVKRTQRF 103
           HCSSTMAVSALPEQGNIPTATTINTSNGGHVLMLHVKRTQRF
Sbjct: 61  HCSSTMAVSALPEQGNIPTATTINTSNGGHVLMLHVKRTQRF 102

[Close]
BLAST of Csa7G024110 vs. NCBI nr
Match: gi|659094517|ref|XP_008448104.1| (PREDICTED: zinc finger protein ZAT3 [Cucumis melo])

HSP 1 Score: 129.8 bits (325), Expect = 2.7e-27
Identity = 61/65 (93.85%), Postives = 62/65 (95.38%), Query Frame = 1 

Query: 1   MQATWITRCPSRKIKKVGHYSLSKLQLVVDSVQGADGSIQIGTFYESFPQLNNPSFPDTD 60
           MQATWITRCPS KIKKVGHYSLSKLQLV+DSVQGADGSIQIG FYESFPQLN PSFPDTD
Sbjct: 294 MQATWITRCPSGKIKKVGHYSLSKLQLVIDSVQGADGSIQIGPFYESFPQLNPPSFPDTD 353

Query: 61  HCSST 66
           HCSST
Sbjct: 354 HCSST 358

[Close]
BLAST of Csa7G024110 vs. NCBI nr
Match: gi|567859560|ref|XP_006422434.1| (hypothetical protein CICLE_v10027765mg [Citrus clementina])

HSP 1 Score: 86.7 bits (213), Expect = 2.7e-14
Identity = 47/75 (62.67%), Postives = 57/75 (76.00%), Query Frame = 1 

Query: 6   ITRCPSRKIKKVGHYSLSKLQLVVDSVQGADGSIQIGTFYESFPQLNNPSFPDTDHCSST 65
           ITR PSRKIKKVGH SL KLQLV+DSVQGA+G+IQIG+FY +FP LN+P+F  +   SS 
Sbjct: 664 ITRWPSRKIKKVGH-SLRKLQLVIDSVQGAEGAIQIGSFYTTFPDLNSPNFSGSGTFSS- 723

Query: 66  MAVSALPEQGNIPTA 81
           M ++  PE  N P A
Sbjct: 724 MKINDHPEPSNAPPA 736

[Close]
BLAST of Csa7G024110 vs. NCBI nr
Match: gi|568866516|ref|XP_006486601.1| (PREDICTED: protein NLP2 isoform X2 [Citrus sinensis])

HSP 1 Score: 85.5 bits (210), Expect = 5.9e-14
Identity = 47/75 (62.67%), Postives = 56/75 (74.67%), Query Frame = 1 

Query: 6   ITRCPSRKIKKVGHYSLSKLQLVVDSVQGADGSIQIGTFYESFPQLNNPSFPDTDHCSST 65
           ITR PSRKIKKVGH SL KLQLV+DSVQGA+G+IQIG+FY +FP LN+P F  +   SS 
Sbjct: 664 ITRWPSRKIKKVGH-SLRKLQLVIDSVQGAEGAIQIGSFYTTFPDLNSPIFSGSGTFSS- 723

Query: 66  MAVSALPEQGNIPTA 81
           M ++  PE  N P A
Sbjct: 724 MKINDHPEPSNAPPA 736

[Close]
BLAST of Csa7G024110 vs. NCBI nr
Match: gi|823204345|ref|XP_012436443.1| (PREDICTED: protein NLP2-like [Gossypium raimondii])

HSP 1 Score: 83.2 bits (204), Expect = 2.9e-13
Identity = 43/72 (59.72%), Postives = 55/72 (76.39%), Query Frame = 1 

Query: 6   ITRCPSRKIKKVGHYSLSKLQLVVDSVQGADGSIQIGTFYESFPQLNNPSFPDTDHCSST 65
           ITR PSRKIKKVGH SL KLQLV+DSVQGA+G+IQIG+FY SFP+L++P+F      SS 
Sbjct: 668 ITRWPSRKIKKVGH-SLRKLQLVIDSVQGAEGAIQIGSFYSSFPELSSPNFSGKGPSSSK 727

Query: 66  MAVSALPEQGNI 78
           ++  + P +  I
Sbjct: 728 ISNQSKPSEPQI 738

The following BLAST results are available for this feature:
BLAST of Csa7G024110 vs. Swiss-Prot
Match NameE-valueIdentityDescription
NLP1_ARATH1.9e-1274.00Protein NLP1 OS=Arabidopsis thaliana GN=NLP1 PE=2 SV=1[more]
NLP2_ARATH1.9e-1268.52Protein NLP2 OS=Arabidopsis thaliana GN=NLP2 PE=2 SV=3[more]
NLP3_ARATH8.0e-1145.78Protein NLP3 OS=Arabidopsis thaliana GN=NLP3 PE=2 SV=1[more]
NLP4_ARATH3.4e-0942.68Protein NLP4 OS=Arabidopsis thaliana GN=NLP4 PE=2 SV=1[more]
NLP1_ORYSJ1.1e-0762.79Protein NLP1 OS=Oryza sativa subsp. japonica GN=NLP1 PE=2 SV=1[more]
BLAST of Csa7G024110 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K676_CUCSA6.5e-52100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_7G024110 PE=4 SV=1[more]
V4U8W2_9ROSI1.9e-1462.67Uncharacterized protein OS=Citrus clementina GN=CICLE_v10027765mg PE=4 SV=1[more]
A0A0D2PNI4_GOSRA2.1e-1359.72Uncharacterized protein OS=Gossypium raimondii GN=B456_008G041100 PE=4 SV=1[more]
M5VGP2_PRUPE2.7e-1371.19Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa018195mg PE=4 SV=1[more]
A0A022RCG9_ERYGU3.5e-1348.35Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a000964mg PE=4 SV=1[more]
BLAST of Csa7G024110 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G17150.11.1e-1374.00 Plant regulator RWP-RK family protein[more]
AT4G35270.11.1e-1368.52 Plant regulator RWP-RK family protein[more]
AT4G38340.14.5e-1245.78 Plant regulator RWP-RK family protein[more]
AT1G20640.11.9e-1042.68 Plant regulator RWP-RK family protein[more]
AT1G76350.11.8e-0846.67 Plant regulator RWP-RK family protein[more]
BLAST of Csa7G024110 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700188103|gb|KGN43336.1|9.4e-52100.00hypothetical protein Csa_7G024110 [Cucumis sativus][more]
gi|659094517|ref|XP_008448104.1|2.7e-2793.85PREDICTED: zinc finger protein ZAT3 [Cucumis melo][more]
gi|567859560|ref|XP_006422434.1|2.7e-1462.67hypothetical protein CICLE_v10027765mg [Citrus clementina][more]
gi|568866516|ref|XP_006486601.1|5.9e-1462.67PREDICTED: protein NLP2 isoform X2 [Citrus sinensis][more]
gi|823204345|ref|XP_012436443.1|2.9e-1359.72PREDICTED: protein NLP2-like [Gossypium raimondii][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005575 cellular_component
cellular_component GO:0005634 nucleus
molecular_function GO:0003674 molecular_function
molecular_function GO:0005515 protein binding
molecular_function GO:0003677 DNA binding
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU128102cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa7G024110.1Csa7G024110.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU128102CU128102transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR32002FAMILY NOT NAMEDcoord: 6..85
score: 1.5
NoneNo IPR availablePANTHERPTHR32002:SF3PROTEIN NLP1-RELATEDcoord: 6..85
score: 1.5

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa7G024110ClCG11G018730Watermelon (Charleston Gray)cuwcgB533
Csa7G024110Cp4.1LG15g06330Cucurbita pepo (Zucchini)cpecuB257
Csa7G024110CsGy7G001650Cucumber (Gy14) v2cgybcuB324
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Csa7G024110Csa4G658610Cucumber (Chinese Long) v2cucuB151
The following block(s) are covering this gene:
GeneOrganismBlock
Csa7G024110Watermelon (97103) v2cuwmbB529
Csa7G024110Wax gourdcuwgoB670
Csa7G024110Cucumber (Chinese Long) v2cucuB171
Csa7G024110Cucumber (Gy14) v1cgycuB111
Csa7G024110Cucumber (Gy14) v1cgycuB156
Csa7G024110Cucurbita maxima (Rimu)cmacuB151
Csa7G024110Cucurbita maxima (Rimu)cmacuB527
Csa7G024110Cucurbita maxima (Rimu)cmacuB574
Csa7G024110Cucurbita maxima (Rimu)cmacuB642
Csa7G024110Cucurbita moschata (Rifu)cmocuB132
Csa7G024110Cucurbita moschata (Rifu)cmocuB518
Csa7G024110Cucurbita moschata (Rifu)cmocuB563
Csa7G024110Cucurbita moschata (Rifu)cmocuB631
Csa7G024110Melon (DHL92) v3.5.1cumeB531
Csa7G024110Watermelon (Charleston Gray)cuwcgB546
Csa7G024110Watermelon (97103) v1cuwmB604
Csa7G024110Cucurbita pepo (Zucchini)cpecuB300
Csa7G024110Cucurbita pepo (Zucchini)cpecuB690
Csa7G024110Bottle gourd (USVL1VR-Ls)culsiB494
Csa7G024110Melon (DHL92) v3.6.1cumedB510
Csa7G024110Melon (DHL92) v3.6.1cumedB516
Csa7G024110Silver-seed gourdcarcuB0228
Csa7G024110Silver-seed gourdcarcuB0383
Csa7G024110Silver-seed gourdcarcuB0872
Csa7G024110Silver-seed gourdcarcuB1081