Cp4.1LG15g06330 (gene) Cucurbita pepo (Zucchini)

NameCp4.1LG15g06330
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionNodule inception family protein
LocationCp4.1LG15 : 7115271 .. 7115486 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGCAACATGGATAACAAGGTGGCCTTCCCAAAAGATCAAGAACGTAGGCCATTCTCTAAGGAAACTCCAGCTCGTGATCGACACGGTTGAACGTGCTGATGGTGCAACACAGAATGGGTCTTTCTATAAAAGCTTCTCACAGTTGAACTCTCCCAGTTTTCCTGAGATTGGCCATTATTCATCCATGAAGATGAGTGACCATCATGAGTAA

mRNA sequence

ATGGAGGCAACATGGATAACAAGGTGGCCTTCCCAAAAGATCAAGAACGTAGGCCATTCTCTAAGGAAACTCCAGCTCGTGATCGACACGGTTGAACGTGCTGATGGTGCAACACAGAATGGGTCTTTCTATAAAAGCTTCTCACAGTTGAACTCTCCCAGTTTTCCTGAGATTGGCCATTATTCATCCATGAAGATGAGTGACCATCATGAGTAA

Coding sequence (CDS)

ATGGAGGCAACATGGATAACAAGGTGGCCTTCCCAAAAGATCAAGAACGTAGGCCATTCTCTAAGGAAACTCCAGCTCGTGATCGACACGGTTGAACGTGCTGATGGTGCAACACAGAATGGGTCTTTCTATAAAAGCTTCTCACAGTTGAACTCTCCCAGTTTTCCTGAGATTGGCCATTATTCATCCATGAAGATGAGTGACCATCATGAGTAA

Protein sequence

MEATWITRWPSQKIKNVGHSLRKLQLVIDTVERADGATQNGSFYKSFSQLNSPSFPEIGHYSSMKMSDHHE
BLAST of Cp4.1LG15g06330 vs. Swiss-Prot
Match: NLP1_ARATH (Protein NLP1 OS=Arabidopsis thaliana GN=NLP1 PE=2 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 8.5e-12
Identity = 33/54 (61.11%), Postives = 41/54 (75.93%), Query Frame = 1

Query: 6   ITRWPSQKIKNVGHSLRKLQLVIDTVERADGATQNGSFYKSFSQLNSPSFPEIG 60
           I RWPS+KIK VGHSL+KLQLV+D+V+ A G+ Q  SFY SF +LNSP+    G
Sbjct: 645 IMRWPSRKIKKVGHSLKKLQLVMDSVQGAQGSIQLDSFYTSFPELNSPNMSSNG 698

BLAST of Cp4.1LG15g06330 vs. Swiss-Prot
Match: NLP2_ARATH (Protein NLP2 OS=Arabidopsis thaliana GN=NLP2 PE=2 SV=3)

HSP 1 Score: 69.7 bits (169), Expect = 1.5e-11
Identity = 33/54 (61.11%), Postives = 40/54 (74.07%), Query Frame = 1

Query: 6   ITRWPSQKIKNVGHSLRKLQLVIDTVERADGATQNGSFYKSFSQLNSPSFPEIG 60
           ITRWPS+KIK VGHSL+KLQLVID+V+   G+ Q  SFY SF +L+SP     G
Sbjct: 685 ITRWPSRKIKKVGHSLKKLQLVIDSVQGVQGSIQLDSFYTSFPELSSPHMSGTG 738

BLAST of Cp4.1LG15g06330 vs. Swiss-Prot
Match: NLP3_ARATH (Protein NLP3 OS=Arabidopsis thaliana GN=NLP3 PE=2 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 1.6e-10
Identity = 34/56 (60.71%), Postives = 41/56 (73.21%), Query Frame = 1

Query: 6   ITRWPSQKIKNVGHSLRKLQLVIDTVERADGATQNGSFYKSFSQL---NSPSFPEI 59
           I+RWPS+KIK VGHSLRKLQ+V+D+VE   G+    SFY SF QL   +S SFP I
Sbjct: 535 ISRWPSRKIKKVGHSLRKLQVVMDSVEGVQGSLHLASFYSSFPQLQSSSSSSFPFI 590

BLAST of Cp4.1LG15g06330 vs. Swiss-Prot
Match: NLP1_ORYSJ (Protein NLP1 OS=Oryza sativa subsp. japonica GN=NLP1 PE=2 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 4.4e-08
Identity = 25/44 (56.82%), Postives = 34/44 (77.27%), Query Frame = 1

Query: 6   ITRWPSQKIKNVGHSLRKLQLVIDTVERADGATQNGSFYKSFSQ 50
           I RWPS+KIK VGHSL+KLQ+VID+V   +G  Q  S Y++F++
Sbjct: 659 INRWPSRKIKKVGHSLKKLQMVIDSVHGPEGTVQLSSLYENFTK 702

BLAST of Cp4.1LG15g06330 vs. Swiss-Prot
Match: NLP4_ARATH (Protein NLP4 OS=Arabidopsis thaliana GN=NLP4 PE=2 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 5.7e-08
Identity = 28/49 (57.14%), Postives = 34/49 (69.39%), Query Frame = 1

Query: 6   ITRWPSQKIKNVGHSLRKLQLVIDTVERADGATQNGSFYKSFSQLNSPS 55
           I RWPS+KIK VGHSL+K+Q VID+V+   G    GSFY +F  L S S
Sbjct: 595 IQRWPSRKIKKVGHSLQKIQRVIDSVQGVSGPLPIGSFYANFPNLVSQS 643

BLAST of Cp4.1LG15g06330 vs. TrEMBL
Match: M5VGP2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa018195mg PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 4.7e-17
Identity = 45/64 (70.31%), Postives = 51/64 (79.69%), Query Frame = 1

Query: 6   ITRWPSQKIKNVGHSLRKLQLVIDTVERADGATQNGSFYKSFSQLNSPSFPEIGHYSSMK 65
           ITRWPS+KIK VGHSL+KLQLVID+V+ A+GA   GSFY SF +LN P FP  G YSSM 
Sbjct: 599 ITRWPSRKIKKVGHSLKKLQLVIDSVQGAEGAIHIGSFYSSFPELNFPKFPGSGQYSSMN 658

Query: 66  MSDH 70
           MSDH
Sbjct: 659 MSDH 662

BLAST of Cp4.1LG15g06330 vs. TrEMBL
Match: V4U8W2_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10027765mg PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 1.8e-16
Identity = 45/66 (68.18%), Postives = 54/66 (81.82%), Query Frame = 1

Query: 6   ITRWPSQKIKNVGHSLRKLQLVIDTVERADGATQNGSFYKSFSQLNSPSFPEIGHYSSMK 65
           ITRWPS+KIK VGHSLRKLQLVID+V+ A+GA Q GSFY +F  LNSP+F   G +SSMK
Sbjct: 664 ITRWPSRKIKKVGHSLRKLQLVIDSVQGAEGAIQIGSFYTTFPDLNSPNFSGSGTFSSMK 723

Query: 66  MSDHHE 72
           ++DH E
Sbjct: 724 INDHPE 729

BLAST of Cp4.1LG15g06330 vs. TrEMBL
Match: T1SBU4_DATGL (Nodule inception protein 1 OS=Datisca glomerata GN=NIN1 PE=2 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 4.4e-15
Identity = 41/64 (64.06%), Postives = 53/64 (82.81%), Query Frame = 1

Query: 6   ITRWPSQKIKNVGHSLRKLQLVIDTVERADGATQNGSFYKSFSQLNSPSFPEIGHYSSMK 65
           I+RWPS+KIK VGHSLRKLQLVID+V+ A+GA Q GSFYKSF +L+SP+F     ++S+ 
Sbjct: 634 ISRWPSRKIKKVGHSLRKLQLVIDSVQGAEGAIQIGSFYKSFPELSSPTFAGTSPFTSLN 693

Query: 66  MSDH 70
           M+DH
Sbjct: 694 MTDH 697

BLAST of Cp4.1LG15g06330 vs. TrEMBL
Match: A0A0A0K676_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G024110 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 5.7e-15
Identity = 43/64 (67.19%), Postives = 53/64 (82.81%), Query Frame = 1

Query: 1  MEATWITRWPSQKIKNVGH-SLRKLQLVIDTVERADGATQNGSFYKSFSQLNSPSFPEIG 60
          M+ATWITR PS+KIK VGH SL KLQLV+D+V+ ADG+ Q G+FY+SF QLN+PSFP+  
Sbjct: 1  MQATWITRCPSRKIKKVGHYSLSKLQLVVDSVQGADGSIQIGTFYESFPQLNNPSFPDTD 60

Query: 61 HYSS 64
          H SS
Sbjct: 61 HCSS 64

BLAST of Cp4.1LG15g06330 vs. TrEMBL
Match: A0A061DXA4_THECC (Plant regulator RWP-RK family protein, putative isoform 1 OS=Theobroma cacao GN=TCM_006453 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 9.8e-15
Identity = 42/64 (65.62%), Postives = 53/64 (82.81%), Query Frame = 1

Query: 6   ITRWPSQKIKNVGHSLRKLQLVIDTVERADGATQNGSFYKSFSQLNSPSFPEIGHYSSMK 65
           ITRWPS+KIK VGHSL+KLQLVID+V+ A+GA Q GSFY SF +L+SP+F   G  SS+K
Sbjct: 671 ITRWPSRKIKKVGHSLKKLQLVIDSVQGAEGAIQIGSFYSSFPELSSPNFSGNGPSSSLK 730

Query: 66  MSDH 70
           +S+H
Sbjct: 731 ISNH 734

BLAST of Cp4.1LG15g06330 vs. TAIR10
Match: AT2G17150.1 (AT2G17150.1 Plant regulator RWP-RK family protein)

HSP 1 Score: 70.5 bits (171), Expect = 4.8e-13
Identity = 33/54 (61.11%), Postives = 41/54 (75.93%), Query Frame = 1

Query: 6   ITRWPSQKIKNVGHSLRKLQLVIDTVERADGATQNGSFYKSFSQLNSPSFPEIG 60
           I RWPS+KIK VGHSL+KLQLV+D+V+ A G+ Q  SFY SF +LNSP+    G
Sbjct: 645 IMRWPSRKIKKVGHSLKKLQLVMDSVQGAQGSIQLDSFYTSFPELNSPNMSSNG 698

BLAST of Cp4.1LG15g06330 vs. TAIR10
Match: AT4G35270.1 (AT4G35270.1 Plant regulator RWP-RK family protein)

HSP 1 Score: 69.7 bits (169), Expect = 8.2e-13
Identity = 33/54 (61.11%), Postives = 40/54 (74.07%), Query Frame = 1

Query: 6   ITRWPSQKIKNVGHSLRKLQLVIDTVERADGATQNGSFYKSFSQLNSPSFPEIG 60
           ITRWPS+KIK VGHSL+KLQLVID+V+   G+ Q  SFY SF +L+SP     G
Sbjct: 685 ITRWPSRKIKKVGHSLKKLQLVIDSVQGVQGSIQLDSFYTSFPELSSPHMSGTG 738

BLAST of Cp4.1LG15g06330 vs. TAIR10
Match: AT4G38340.1 (AT4G38340.1 Plant regulator RWP-RK family protein)

HSP 1 Score: 66.2 bits (160), Expect = 9.0e-12
Identity = 34/56 (60.71%), Postives = 41/56 (73.21%), Query Frame = 1

Query: 6   ITRWPSQKIKNVGHSLRKLQLVIDTVERADGATQNGSFYKSFSQL---NSPSFPEI 59
           I+RWPS+KIK VGHSLRKLQ+V+D+VE   G+    SFY SF QL   +S SFP I
Sbjct: 535 ISRWPSRKIKKVGHSLRKLQVVMDSVEGVQGSLHLASFYSSFPQLQSSSSSSFPFI 590

BLAST of Cp4.1LG15g06330 vs. TAIR10
Match: AT1G20640.1 (AT1G20640.1 Plant regulator RWP-RK family protein)

HSP 1 Score: 57.8 bits (138), Expect = 3.2e-09
Identity = 28/49 (57.14%), Postives = 34/49 (69.39%), Query Frame = 1

Query: 6   ITRWPSQKIKNVGHSLRKLQLVIDTVERADGATQNGSFYKSFSQLNSPS 55
           I RWPS+KIK VGHSL+K+Q VID+V+   G    GSFY +F  L S S
Sbjct: 595 IQRWPSRKIKKVGHSLQKIQRVIDSVQGVSGPLPIGSFYANFPNLVSQS 643

BLAST of Cp4.1LG15g06330 vs. TAIR10
Match: AT1G76350.1 (AT1G76350.1 Plant regulator RWP-RK family protein)

HSP 1 Score: 54.3 bits (129), Expect = 3.6e-08
Identity = 28/46 (60.87%), Postives = 32/46 (69.57%), Query Frame = 1

Query: 6   ITRWPSQKIKNVGHSLRKLQLVIDTVERADG-ATQNGSFYKSFSQL 51
           I RWPS+KIK VGHSL+K+Q VID+VE   G     GSFY SF  L
Sbjct: 586 IQRWPSRKIKKVGHSLQKIQRVIDSVEGVSGHHLPIGSFYASFPNL 631

BLAST of Cp4.1LG15g06330 vs. NCBI nr
Match: gi|645260780|ref|XP_008235979.1| (PREDICTED: LOW QUALITY PROTEIN: protein NLP2-like [Prunus mume])

HSP 1 Score: 96.3 bits (238), Expect = 2.3e-17
Identity = 46/64 (71.88%), Postives = 52/64 (81.25%), Query Frame = 1

Query: 6   ITRWPSQKIKNVGHSLRKLQLVIDTVERADGATQNGSFYKSFSQLNSPSFPEIGHYSSMK 65
           ITRWPS+KIK VGHSL+KLQLVID+V+ A+GA   GSFY SF +LNSP FP  G YSSM 
Sbjct: 659 ITRWPSRKIKMVGHSLKKLQLVIDSVQGAEGAIDIGSFYSSFPELNSPKFPGSGQYSSMN 718

Query: 66  MSDH 70
           MSDH
Sbjct: 719 MSDH 722

BLAST of Cp4.1LG15g06330 vs. NCBI nr
Match: gi|595790583|ref|XP_007199040.1| (hypothetical protein PRUPE_ppa018195mg [Prunus persica])

HSP 1 Score: 94.7 bits (234), Expect = 6.7e-17
Identity = 45/64 (70.31%), Postives = 51/64 (79.69%), Query Frame = 1

Query: 6   ITRWPSQKIKNVGHSLRKLQLVIDTVERADGATQNGSFYKSFSQLNSPSFPEIGHYSSMK 65
           ITRWPS+KIK VGHSL+KLQLVID+V+ A+GA   GSFY SF +LN P FP  G YSSM 
Sbjct: 599 ITRWPSRKIKKVGHSLKKLQLVIDSVQGAEGAIHIGSFYSSFPELNFPKFPGSGQYSSMN 658

Query: 66  MSDH 70
           MSDH
Sbjct: 659 MSDH 662

BLAST of Cp4.1LG15g06330 vs. NCBI nr
Match: gi|659094517|ref|XP_008448104.1| (PREDICTED: zinc finger protein ZAT3 [Cucumis melo])

HSP 1 Score: 94.0 bits (232), Expect = 1.1e-16
Identity = 48/70 (68.57%), Postives = 54/70 (77.14%), Query Frame = 1

Query: 1   MEATWITRWPSQKIKNVGH-SLRKLQLVIDTVERADGATQNGSFYKSFSQLNSPSFPEIG 60
           M+ATWITR PS KIK VGH SL KLQLVID+V+ ADG+ Q G FY+SF QLN PSFP+  
Sbjct: 294 MQATWITRCPSGKIKKVGHYSLSKLQLVIDSVQGADGSIQIGPFYESFPQLNPPSFPDTD 353

Query: 61  HYSSMKMSDH 70
           H SS KM DH
Sbjct: 354 HCSSTKMRDH 363

BLAST of Cp4.1LG15g06330 vs. NCBI nr
Match: gi|567859560|ref|XP_006422434.1| (hypothetical protein CICLE_v10027765mg [Citrus clementina])

HSP 1 Score: 92.8 bits (229), Expect = 2.6e-16
Identity = 45/66 (68.18%), Postives = 54/66 (81.82%), Query Frame = 1

Query: 6   ITRWPSQKIKNVGHSLRKLQLVIDTVERADGATQNGSFYKSFSQLNSPSFPEIGHYSSMK 65
           ITRWPS+KIK VGHSLRKLQLVID+V+ A+GA Q GSFY +F  LNSP+F   G +SSMK
Sbjct: 664 ITRWPSRKIKKVGHSLRKLQLVIDSVQGAEGAIQIGSFYTTFPDLNSPNFSGSGTFSSMK 723

Query: 66  MSDHHE 72
           ++DH E
Sbjct: 724 INDHPE 729

BLAST of Cp4.1LG15g06330 vs. NCBI nr
Match: gi|568866516|ref|XP_006486601.1| (PREDICTED: protein NLP2 isoform X2 [Citrus sinensis])

HSP 1 Score: 91.7 bits (226), Expect = 5.7e-16
Identity = 45/66 (68.18%), Postives = 53/66 (80.30%), Query Frame = 1

Query: 6   ITRWPSQKIKNVGHSLRKLQLVIDTVERADGATQNGSFYKSFSQLNSPSFPEIGHYSSMK 65
           ITRWPS+KIK VGHSLRKLQLVID+V+ A+GA Q GSFY +F  LNSP F   G +SSMK
Sbjct: 664 ITRWPSRKIKKVGHSLRKLQLVIDSVQGAEGAIQIGSFYTTFPDLNSPIFSGSGTFSSMK 723

Query: 66  MSDHHE 72
           ++DH E
Sbjct: 724 INDHPE 729

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
NLP1_ARATH8.5e-1261.11Protein NLP1 OS=Arabidopsis thaliana GN=NLP1 PE=2 SV=1[more]
NLP2_ARATH1.5e-1161.11Protein NLP2 OS=Arabidopsis thaliana GN=NLP2 PE=2 SV=3[more]
NLP3_ARATH1.6e-1060.71Protein NLP3 OS=Arabidopsis thaliana GN=NLP3 PE=2 SV=1[more]
NLP1_ORYSJ4.4e-0856.82Protein NLP1 OS=Oryza sativa subsp. japonica GN=NLP1 PE=2 SV=1[more]
NLP4_ARATH5.7e-0857.14Protein NLP4 OS=Arabidopsis thaliana GN=NLP4 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
M5VGP2_PRUPE4.7e-1770.31Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa018195mg PE=4 SV=1[more]
V4U8W2_9ROSI1.8e-1668.18Uncharacterized protein OS=Citrus clementina GN=CICLE_v10027765mg PE=4 SV=1[more]
T1SBU4_DATGL4.4e-1564.06Nodule inception protein 1 OS=Datisca glomerata GN=NIN1 PE=2 SV=1[more]
A0A0A0K676_CUCSA5.7e-1567.19Uncharacterized protein OS=Cucumis sativus GN=Csa_7G024110 PE=4 SV=1[more]
A0A061DXA4_THECC9.8e-1565.63Plant regulator RWP-RK family protein, putative isoform 1 OS=Theobroma cacao GN=... [more]
Match NameE-valueIdentityDescription
AT2G17150.14.8e-1361.11 Plant regulator RWP-RK family protein[more]
AT4G35270.18.2e-1361.11 Plant regulator RWP-RK family protein[more]
AT4G38340.19.0e-1260.71 Plant regulator RWP-RK family protein[more]
AT1G20640.13.2e-0957.14 Plant regulator RWP-RK family protein[more]
AT1G76350.13.6e-0860.87 Plant regulator RWP-RK family protein[more]
Match NameE-valueIdentityDescription
gi|645260780|ref|XP_008235979.1|2.3e-1771.88PREDICTED: LOW QUALITY PROTEIN: protein NLP2-like [Prunus mume][more]
gi|595790583|ref|XP_007199040.1|6.7e-1770.31hypothetical protein PRUPE_ppa018195mg [Prunus persica][more]
gi|659094517|ref|XP_008448104.1|1.1e-1668.57PREDICTED: zinc finger protein ZAT3 [Cucumis melo][more]
gi|567859560|ref|XP_006422434.1|2.6e-1668.18hypothetical protein CICLE_v10027765mg [Citrus clementina][more]
gi|568866516|ref|XP_006486601.1|5.7e-1668.18PREDICTED: protein NLP2 isoform X2 [Citrus sinensis][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005575 cellular_component
cellular_component GO:0005634 nucleus
molecular_function GO:0003674 molecular_function
molecular_function GO:0003677 DNA binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG15g06330.1Cp4.1LG15g06330.1mRNA


Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR32002FAMILY NOT NAMEDcoord: 6..68
score: 4.5
NoneNo IPR availablePANTHERPTHR32002:SF3PROTEIN NLP1-RELATEDcoord: 6..68
score: 4.5

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG15g06330Csa7G024110Cucumber (Chinese Long) v2cpecuB257
Cp4.1LG15g06330CsaV3_4G037270Cucumber (Chinese Long) v3cpecucB0310
Cp4.1LG15g06330CsaV3_7G001830Cucumber (Chinese Long) v3cpecucB0322
Cp4.1LG15g06330CsGy7G001650Cucumber (Gy14) v2cgybcpeB910
The following gene(s) are paralogous to this gene:

None