Csa7G004180 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa7G004180
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr7 : 224890 .. 225387 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTATTGTCCGTTTCACCACTTGCGCCATTATCACTCCAAGAGATCATTCACGTGCAGCAACAACCAGTAGTTAGCCCTACAGATTTTAATCATGGAATAATAATGGACCAGGGAAATACTATTGGAGCTCTATCGTCCACTAGCACTACTACTCATCCTCCAACCAAACAACAACAGGATCAAGAAGAAGAAAAGTATTGGGAGGCCGATGTGATCACGAAAAGGAAGATGAATGAATTGGCGAAATATTTAGTTGAGACGAACATTGAGTTTGTGATGCATGTGGTTAAAGATAGTGAGGTGAAGGAGAGATTAGCTGTGGAGATTAACAACTTCCTTGTGTTAAGATTTCATGGGGCATGGCTCAAATATCAAGTGTTGCGCTTTTCTACTCTCTCCATTGTCCTTCTTACGGCTGCCAGGTGGTTCTCCTCAGTCCTCACCCTCAAGGAACAATCACATTATTTTGAACTTTATATATTTATATATTCATAA

mRNA sequence

ATGTTATTGTCCGTTTCACCACTTGCGCCATTATCACTCCAAGAGATCATTCACGTGCAGCAACAACCAGTAGTTAGCCCTACAGATTTTAATCATGGAATAATAATGGACCAGGGAAATACTATTGGAGCTCTATCGTCCACTAGCACTACTACTCATCCTCCAACCAAACAACAACAGGATCAAGAAGAAGAAAAGTATTGGGAGGCCGATGTGATCACGAAAAGGAAGATGAATGAATTGGCGAAATATTTAGTTGAGACGAACATTGAGTTTGTGATGCATGTGGTTAAAGATAGTGAGGTGAAGGAGAGATTAGCTGTGGAGATTAACAACTTCCTTGTGTTAAGATTTCATGGGGCATGGCTCAAATATCAAGTGTTGCGCTTTTCTACTCTCTCCATTGTCCTTCTTACGGCTGCCAGGTGGTTCTCCTCAGTCCTCACCCTCAAGGAACAATCACATTATTTTGAACTTTATATATTTATATATTCATAA

Coding sequence (CDS)

ATGTTATTGTCCGTTTCACCACTTGCGCCATTATCACTCCAAGAGATCATTCACGTGCAGCAACAACCAGTAGTTAGCCCTACAGATTTTAATCATGGAATAATAATGGACCAGGGAAATACTATTGGAGCTCTATCGTCCACTAGCACTACTACTCATCCTCCAACCAAACAACAACAGGATCAAGAAGAAGAAAAGTATTGGGAGGCCGATGTGATCACGAAAAGGAAGATGAATGAATTGGCGAAATATTTAGTTGAGACGAACATTGAGTTTGTGATGCATGTGGTTAAAGATAGTGAGGTGAAGGAGAGATTAGCTGTGGAGATTAACAACTTCCTTGTGTTAAGATTTCATGGGGCATGGCTCAAATATCAAGTGTTGCGCTTTTCTACTCTCTCCATTGTCCTTCTTACGGCTGCCAGGTGGTTCTCCTCAGTCCTCACCCTCAAGGAACAATCACATTATTTTGAACTTTATATATTTATATATTCATAA

Protein sequence

MLLSVSPLAPLSLQEIIHVQQQPVVSPTDFNHGIIMDQGNTIGALSSTSTTTHPPTKQQQDQEEEKYWEADVITKRKMNELAKYLVETNIEFVMHVVKDSEVKERLAVEINNFLVLRFHGAWLKYQVLRFSTLSIVLLTAARWFSSVLTLKEQSHYFELYIFIYS*
Homology
[Close]
BLAST of Csa7G004180 vs. TrEMBL
Match: A0A0A0K0E5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G004180 PE=4 SV=1)

HSP 1 Score: 328.6 bits (841), Expect = 4.5e-87
Identity = 165/165 (100.00%), Postives = 165/165 (100.00%), Query Frame = 1 

Query: 1   MLLSVSPLAPLSLQEIIHVQQQPVVSPTDFNHGIIMDQGNTIGALSSTSTTTHPPTKQQQ 60
           MLLSVSPLAPLSLQEIIHVQQQPVVSPTDFNHGIIMDQGNTIGALSSTSTTTHPPTKQQQ
Sbjct: 1   MLLSVSPLAPLSLQEIIHVQQQPVVSPTDFNHGIIMDQGNTIGALSSTSTTTHPPTKQQQ 60

Query: 61  DQEEEKYWEADVITKRKMNELAKYLVETNIEFVMHVVKDSEVKERLAVEINNFLVLRFHG 120
           DQEEEKYWEADVITKRKMNELAKYLVETNIEFVMHVVKDSEVKERLAVEINNFLVLRFHG
Sbjct: 61  DQEEEKYWEADVITKRKMNELAKYLVETNIEFVMHVVKDSEVKERLAVEINNFLVLRFHG 120

Query: 121 AWLKYQVLRFSTLSIVLLTAARWFSSVLTLKEQSHYFELYIFIYS 166
           AWLKYQVLRFSTLSIVLLTAARWFSSVLTLKEQSHYFELYIFIYS
Sbjct: 121 AWLKYQVLRFSTLSIVLLTAARWFSSVLTLKEQSHYFELYIFIYS 165

[Close]
BLAST of Csa7G004180 vs. TAIR10
Match: AT1G11360.1 (AT1G11360.1 Adenine nucleotide alpha hydrolases-like superfamily protein)

HSP 1 Score: 47.8 bits (112), Expect = 7.8e-06
Identity = 29/95 (30.53%), Postives = 51/95 (53.68%), Query Frame = 1 

Query: 16  IIHVQQQPVVSPTDFNHGIIMDQGNTIGALSSTSTTTHPPTKQQQDQEEEKYWEADVITK 75
           ++HVQ   V+   D+            GA+   S    P  ++ Q + E+ +   D++T 
Sbjct: 70  LLHVQPTSVLYGADW------------GAMD-LSPQWDPNNEESQRKLEDDF---DIVTN 129

Query: 76  RKMNELAKYLVETNIEFVMHVVKDSEVKERLAVEI 111
           +K +++A+ LVE +I F +H+VKD ++KERL +E+
Sbjct: 130 KKASDVAQPLVEADIPFKIHIVKDHDMKERLCLEV 148

[Close]
BLAST of Csa7G004180 vs. NCBI nr
Match: gi|700187932|gb|KGN43165.1| (hypothetical protein Csa_7G004180 [Cucumis sativus])

HSP 1 Score: 328.6 bits (841), Expect = 6.5e-87
Identity = 165/165 (100.00%), Postives = 165/165 (100.00%), Query Frame = 1 

Query: 1   MLLSVSPLAPLSLQEIIHVQQQPVVSPTDFNHGIIMDQGNTIGALSSTSTTTHPPTKQQQ 60
           MLLSVSPLAPLSLQEIIHVQQQPVVSPTDFNHGIIMDQGNTIGALSSTSTTTHPPTKQQQ
Sbjct: 1   MLLSVSPLAPLSLQEIIHVQQQPVVSPTDFNHGIIMDQGNTIGALSSTSTTTHPPTKQQQ 60

Query: 61  DQEEEKYWEADVITKRKMNELAKYLVETNIEFVMHVVKDSEVKERLAVEINNFLVLRFHG 120
           DQEEEKYWEADVITKRKMNELAKYLVETNIEFVMHVVKDSEVKERLAVEINNFLVLRFHG
Sbjct: 61  DQEEEKYWEADVITKRKMNELAKYLVETNIEFVMHVVKDSEVKERLAVEINNFLVLRFHG 120

Query: 121 AWLKYQVLRFSTLSIVLLTAARWFSSVLTLKEQSHYFELYIFIYS 166
           AWLKYQVLRFSTLSIVLLTAARWFSSVLTLKEQSHYFELYIFIYS
Sbjct: 121 AWLKYQVLRFSTLSIVLLTAARWFSSVLTLKEQSHYFELYIFIYS 165

[Close]
BLAST of Csa7G004180 vs. NCBI nr
Match: gi|659094557|ref|XP_008448127.1| (PREDICTED: uncharacterized protein LOC103490416 [Cucumis melo])

HSP 1 Score: 152.5 bits (384), Expect = 6.4e-34
Identity = 84/114 (73.68%), Postives = 92/114 (80.70%), Query Frame = 1 

Query: 16  IIHVQQQPVVSPTDFNHGIIMDQGNTIGALSSTS-----TTTHPPTKQQQDQEEEKYWEA 75
           +IHVQQQPV SPTDFNHGIIMD+GN IGA SS+S     TTT PPTKQQ+D EEEK+W  
Sbjct: 29  LIHVQQQPV-SPTDFNHGIIMDRGNIIGAQSSSSSTSSSTTTDPPTKQQEDAEEEKHW-- 88

Query: 76  DVITKRKMNELAKYLVETNIEFVMHVVKDSEVKERLAVEIN----NFLVLRFHG 121
           D +TKRKMNELAKYL+E  IEFVMHVVKDSEVKERLA EIN    NF+VL F G
Sbjct: 89  DDVTKRKMNELAKYLIEAKIEFVMHVVKDSEVKERLAWEINRLGINFVVLGFQG 139

The following BLAST results are available for this feature:
BLAST of Csa7G004180 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K0E5_CUCSA4.5e-87100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_7G004180 PE=4 SV=1[more]
BLAST of Csa7G004180 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G11360.17.8e-0630.53 Adenine nucleotide alpha hydrolases-like superfamily protein[more]
BLAST of Csa7G004180 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700187932|gb|KGN43165.1|6.5e-87100.00hypothetical protein Csa_7G004180 [Cucumis sativus][more]
gi|659094557|ref|XP_008448127.1|6.4e-3473.68PREDICTED: uncharacterized protein LOC103490416 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa7G004180.1Csa7G004180.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa7G004180MELO3C013432Melon (DHL92) v3.5.1cumeB531
Csa7G004180MELO3C013432.2Melon (DHL92) v3.6.1cumedB510
Csa7G004180CSPI07G00280Wild cucumber (PI 183967)cpicuB354
Csa7G004180Cucsa.377850Cucumber (Gy14) v1cgycuB528
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa7G004180Watermelon (97103) v2cuwmbB519
Csa7G004180Watermelon (97103) v2cuwmbB529
Csa7G004180Watermelon (97103) v2cuwmbB557
Csa7G004180Wax gourdcuwgoB666
Csa7G004180Wax gourdcuwgoB668
Csa7G004180Wax gourdcuwgoB676
Csa7G004180Wax gourdcuwgoB681
Csa7G004180Cucumber (Chinese Long) v2cucuB077
Csa7G004180Cucumber (Chinese Long) v2cucuB080
Csa7G004180Cucumber (Gy14) v1cgycuB136
Csa7G004180Cucumber (Gy14) v1cgycuB243
Csa7G004180Cucurbita maxima (Rimu)cmacuB152
Csa7G004180Cucurbita maxima (Rimu)cmacuB527
Csa7G004180Cucurbita maxima (Rimu)cmacuB575
Csa7G004180Cucurbita maxima (Rimu)cmacuB644
Csa7G004180Cucurbita moschata (Rifu)cmocuB139
Csa7G004180Cucurbita moschata (Rifu)cmocuB186
Csa7G004180Cucurbita moschata (Rifu)cmocuB518
Csa7G004180Cucurbita moschata (Rifu)cmocuB561
Csa7G004180Cucurbita moschata (Rifu)cmocuB633
Csa7G004180Melon (DHL92) v3.5.1cumeB513
Csa7G004180Melon (DHL92) v3.5.1cumeB550
Csa7G004180Watermelon (Charleston Gray)cuwcgB534
Csa7G004180Watermelon (Charleston Gray)cuwcgB546
Csa7G004180Watermelon (Charleston Gray)cuwcgB571
Csa7G004180Watermelon (97103) v1cuwmB577
Csa7G004180Watermelon (97103) v1cuwmB604
Csa7G004180Watermelon (97103) v1cuwmB609
Csa7G004180Cucurbita pepo (Zucchini)cpecuB257
Csa7G004180Cucurbita pepo (Zucchini)cpecuB301
Csa7G004180Cucurbita pepo (Zucchini)cpecuB696
Csa7G004180Cucurbita pepo (Zucchini)cpecuB766
Csa7G004180Cucurbita pepo (Zucchini)cpecuB847
Csa7G004180Bottle gourd (USVL1VR-Ls)culsiB489
Csa7G004180Bottle gourd (USVL1VR-Ls)culsiB494
Csa7G004180Bottle gourd (USVL1VR-Ls)culsiB534
Csa7G004180Cucumber (Gy14) v2cgybcuB089
Csa7G004180Cucumber (Gy14) v2cgybcuB088
Csa7G004180Cucumber (Gy14) v2cgybcuB324
Csa7G004180Melon (DHL92) v3.6.1cumedB493
Csa7G004180Melon (DHL92) v3.6.1cumedB527
Csa7G004180Silver-seed gourdcarcuB0194
Csa7G004180Silver-seed gourdcarcuB0342
Csa7G004180Silver-seed gourdcarcuB0997