CSPI07G00280 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI07G00280
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr7 : 341359 .. 341751 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACCAGGGAAATATTATTGGAGCTCTATCGTCCACTAGCACTACTACTCATCCTCCAACCAAACAACAACAGGATCAAGAAGAAGAAAAGAATTGGGAGGCCGATGTGATCACGAAAAGGAAGATGAATGAATTGGCGAAATATTTAGTTGAGACGAACATTGAGTTTGTGATGCATGTGGTTAAAGATAGTGAGGTGAAGGAGAGATTAGCTGTGGAGATTAACAACTTCCTTGTGTTAAGATTTCATGGGGCATGGCTCAAATATCAAGTGTTGCGCTTTTCTACTCTCTCCATTGTCCTTCTTACGGCTGCCAGGTGGTTCTCCTCAGTCCTCACCCTCAAGGAACAATCACATTATTTTGAACTTTATATATTTATATATTCATAA

mRNA sequence

ATGGACCAGGGAAATATTATTGGAGCTCTATCGTCCACTAGCACTACTACTCATCCTCCAACCAAACAACAACAGGATCAAGAAGAAGAAAAGAATTGGGAGGCCGATGTGATCACGAAAAGGAAGATGAATGAATTGGCGAAATATTTAGTTGAGACGAACATTGAGTTTGTGATGCATGTGGTTAAAGATAGTGAGGTGAAGGAGAGATTAGCTGTGGAGATTAACAACTTCCTTGTGTTAAGATTTCATGGGGCATGGCTCAAATATCAAGTGTTGCGCTTTTCTACTCTCTCCATTGTCCTTCTTACGGCTGCCAGGTGGTTCTCCTCAGTCCTCACCCTCAAGGAACAATCACATTATTTTGAACTTTATATATTTATATATTCATAA

Coding sequence (CDS)

ATGGACCAGGGAAATATTATTGGAGCTCTATCGTCCACTAGCACTACTACTCATCCTCCAACCAAACAACAACAGGATCAAGAAGAAGAAAAGAATTGGGAGGCCGATGTGATCACGAAAAGGAAGATGAATGAATTGGCGAAATATTTAGTTGAGACGAACATTGAGTTTGTGATGCATGTGGTTAAAGATAGTGAGGTGAAGGAGAGATTAGCTGTGGAGATTAACAACTTCCTTGTGTTAAGATTTCATGGGGCATGGCTCAAATATCAAGTGTTGCGCTTTTCTACTCTCTCCATTGTCCTTCTTACGGCTGCCAGGTGGTTCTCCTCAGTCCTCACCCTCAAGGAACAATCACATTATTTTGAACTTTATATATTTATATATTCATAA
Homology
[Close]
BLAST of CSPI07G00280 vs. TrEMBL
Match: A0A0A0K0E5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G004180 PE=4 SV=1)

HSP 1 Score: 247.7 bits (631), Expect = 8.0e-63
Identity = 128/130 (98.46%), Postives = 128/130 (98.46%), Query Frame = 1 

Query: 1   MDQGNIIGALSSTSTTTHPPTKQQQDQEEEKNWEADVITKRKMNELAKYLVETNIEFVMH 60
           MDQGN IGALSSTSTTTHPPTKQQQDQEEEK WEADVITKRKMNELAKYLVETNIEFVMH
Sbjct: 36  MDQGNTIGALSSTSTTTHPPTKQQQDQEEEKYWEADVITKRKMNELAKYLVETNIEFVMH 95

Query: 61  VVKDSEVKERLAVEINNFLVLRFHGAWLKYQVLRFSTLSIVLLTAARWFSSVLTLKEQSH 120
           VVKDSEVKERLAVEINNFLVLRFHGAWLKYQVLRFSTLSIVLLTAARWFSSVLTLKEQSH
Sbjct: 96  VVKDSEVKERLAVEINNFLVLRFHGAWLKYQVLRFSTLSIVLLTAARWFSSVLTLKEQSH 155

Query: 121 YFELYIFIYS 131
           YFELYIFIYS
Sbjct: 156 YFELYIFIYS 165

[Close]
BLAST of CSPI07G00280 vs. NCBI nr
Match: gi|700187932|gb|KGN43165.1| (hypothetical protein Csa_7G004180 [Cucumis sativus])

HSP 1 Score: 247.7 bits (631), Expect = 1.1e-62
Identity = 128/130 (98.46%), Postives = 128/130 (98.46%), Query Frame = 1 

Query: 1   MDQGNIIGALSSTSTTTHPPTKQQQDQEEEKNWEADVITKRKMNELAKYLVETNIEFVMH 60
           MDQGN IGALSSTSTTTHPPTKQQQDQEEEK WEADVITKRKMNELAKYLVETNIEFVMH
Sbjct: 36  MDQGNTIGALSSTSTTTHPPTKQQQDQEEEKYWEADVITKRKMNELAKYLVETNIEFVMH 95

Query: 61  VVKDSEVKERLAVEINNFLVLRFHGAWLKYQVLRFSTLSIVLLTAARWFSSVLTLKEQSH 120
           VVKDSEVKERLAVEINNFLVLRFHGAWLKYQVLRFSTLSIVLLTAARWFSSVLTLKEQSH
Sbjct: 96  VVKDSEVKERLAVEINNFLVLRFHGAWLKYQVLRFSTLSIVLLTAARWFSSVLTLKEQSH 155

Query: 121 YFELYIFIYS 131
           YFELYIFIYS
Sbjct: 156 YFELYIFIYS 165

[Close]
BLAST of CSPI07G00280 vs. NCBI nr
Match: gi|659094557|ref|XP_008448127.1| (PREDICTED: uncharacterized protein LOC103490416 [Cucumis melo])

HSP 1 Score: 115.9 bits (289), Expect = 5.2e-23
Identity = 67/94 (71.28%), Postives = 74/94 (78.72%), Query Frame = 1 

Query: 1   MDQGNIIGALSSTS-----TTTHPPTKQQQDQEEEKNWEADVITKRKMNELAKYLVETNI 60
           MD+GNIIGA SS+S     TTT PPTKQQ+D EEEK+W  D +TKRKMNELAKYL+E  I
Sbjct: 48  MDRGNIIGAQSSSSSTSSSTTTDPPTKQQEDAEEEKHW--DDVTKRKMNELAKYLIEAKI 107

Query: 61  EFVMHVVKDSEVKERLAVEIN----NFLVLRFHG 86
           EFVMHVVKDSEVKERLA EIN    NF+VL F G
Sbjct: 108 EFVMHVVKDSEVKERLAWEINRLGINFVVLGFQG 139

The following BLAST results are available for this feature:
BLAST of CSPI07G00280 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI07G00280 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K0E5_CUCSA8.0e-6398.46Uncharacterized protein OS=Cucumis sativus GN=Csa_7G004180 PE=4 SV=1[more]
BLAST of CSPI07G00280 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI07G00280 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700187932|gb|KGN43165.1|1.1e-6298.46hypothetical protein Csa_7G004180 [Cucumis sativus][more]
gi|659094557|ref|XP_008448127.1|5.2e-2371.28PREDICTED: uncharacterized protein LOC103490416 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI07G00280.1CSPI07G00280.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI07G00280Csa7G004180Cucumber (Chinese Long) v2cpicuB354
CSPI07G00280MELO3C013432Melon (DHL92) v3.5.1cpimeB539
CSPI07G00280MELO3C013432.2Melon (DHL92) v3.6.1cpimedB524
CSPI07G00280CsaV3_7G000250Cucumber (Chinese Long) v3cpicucB415
CSPI07G00280Cucsa.377850Cucumber (Gy14) v1cgycpiB557
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI07G00280Watermelon (Charleston Gray)cpiwcgB563
CSPI07G00280Watermelon (Charleston Gray)cpiwcgB575
CSPI07G00280Watermelon (Charleston Gray)cpiwcgB598
CSPI07G00280Watermelon (97103) v1cpiwmB595
CSPI07G00280Watermelon (97103) v1cpiwmB622
CSPI07G00280Watermelon (97103) v1cpiwmB628
CSPI07G00280Cucurbita pepo (Zucchini)cpecpiB259
CSPI07G00280Cucurbita pepo (Zucchini)cpecpiB300
CSPI07G00280Cucurbita pepo (Zucchini)cpecpiB698
CSPI07G00280Cucurbita pepo (Zucchini)cpecpiB769
CSPI07G00280Cucurbita pepo (Zucchini)cpecpiB850
CSPI07G00280Bottle gourd (USVL1VR-Ls)cpilsiB497
CSPI07G00280Bottle gourd (USVL1VR-Ls)cpilsiB506
CSPI07G00280Bottle gourd (USVL1VR-Ls)cpilsiB549
CSPI07G00280Melon (DHL92) v3.6.1cpimedB503
CSPI07G00280Melon (DHL92) v3.6.1cpimedB543
CSPI07G00280Cucumber (Gy14) v2cgybcpiB086
CSPI07G00280Cucumber (Gy14) v2cgybcpiB089
CSPI07G00280Cucumber (Gy14) v2cgybcpiB332
CSPI07G00280Silver-seed gourdcarcpiB0201
CSPI07G00280Silver-seed gourdcarcpiB0348
CSPI07G00280Silver-seed gourdcarcpiB1020
CSPI07G00280Cucumber (Chinese Long) v3cpicucB384
CSPI07G00280Cucumber (Chinese Long) v3cpicucB387
CSPI07G00280Watermelon (97103) v2cpiwmbB553
CSPI07G00280Watermelon (97103) v2cpiwmbB543
CSPI07G00280Watermelon (97103) v2cpiwmbB581
CSPI07G00280Wax gourdcpiwgoB677
CSPI07G00280Wax gourdcpiwgoB679
CSPI07G00280Wax gourdcpiwgoB688
CSPI07G00280Wax gourdcpiwgoB693
CSPI07G00280Wild cucumber (PI 183967)cpicpiB089
CSPI07G00280Wild cucumber (PI 183967)cpicpiB092
CSPI07G00280Cucumber (Gy14) v1cgycpiB136
CSPI07G00280Cucumber (Gy14) v1cgycpiB249
CSPI07G00280Cucurbita maxima (Rimu)cmacpiB150
CSPI07G00280Cucurbita maxima (Rimu)cmacpiB533
CSPI07G00280Cucurbita maxima (Rimu)cmacpiB580
CSPI07G00280Cucurbita maxima (Rimu)cmacpiB651
CSPI07G00280Cucurbita moschata (Rifu)cmocpiB138
CSPI07G00280Cucurbita moschata (Rifu)cmocpiB189
CSPI07G00280Cucurbita moschata (Rifu)cmocpiB524
CSPI07G00280Cucurbita moschata (Rifu)cmocpiB567
CSPI07G00280Cucurbita moschata (Rifu)cmocpiB644
CSPI07G00280Cucumber (Chinese Long) v2cpicuB328
CSPI07G00280Cucumber (Chinese Long) v2cpicuB329
CSPI07G00280Melon (DHL92) v3.5.1cpimeB518
CSPI07G00280Melon (DHL92) v3.5.1cpimeB556