Csa6G517110 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa6G517110
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr6 : 27077650 .. 27077967 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGAGCCTCTACGATGATCGGCCTTTTCTCCTTGGAGTCATGTTGGAATGCTCAAATTCCATCAACTACAGCGATAAAGACAGAGAAGGAGTAGGAGAAGGAAAAGGAGAGAGAGAGAGAAAGAGAGGGAGAGCTAATAGCAATTGCAGTGGGCAGAGAGCCTACAGAGACATATCAATATCGAATATTGTTGCGGCAAAAGTAACGAAGGAAGGTGACTATGTTCAACGGTATGTCTTCGGTCTTCGCCTCTTTCACGGGCATAAAAGTATTTATGTTCCACTAAACTCCTTAACCATCTCTATGGTTCCTTAA

mRNA sequence

ATGTTGAGCCTCTACGATGATCGGCCTTTTCTCCTTGGAGTCATGTTGGAATGCTCAAATTCCATCAACTACAGCGATAAAGACAGAGAAGGAGTAGGAGAAGGAAAAGGAGAGAGAGAGAGAAAGAGAGGGAGAGCTAATAGCAATTGCAGTGGGCAGAGAGCCTACAGAGACATATCAATATCGAATATTGTTGCGGCAAAAGTAACGAAGGAAGGTGACTATGTTCAACGGTATGTCTTCGGTCTTCGCCTCTTTCACGGGCATAAAAGTATTTATGTTCCACTAAACTCCTTAACCATCTCTATGGTTCCTTAA

Coding sequence (CDS)

ATGTTGAGCCTCTACGATGATCGGCCTTTTCTCCTTGGAGTCATGTTGGAATGCTCAAATTCCATCAACTACAGCGATAAAGACAGAGAAGGAGTAGGAGAAGGAAAAGGAGAGAGAGAGAGAAAGAGAGGGAGAGCTAATAGCAATTGCAGTGGGCAGAGAGCCTACAGAGACATATCAATATCGAATATTGTTGCGGCAAAAGTAACGAAGGAAGGTGACTATGTTCAACGGTATGTCTTCGGTCTTCGCCTCTTTCACGGGCATAAAAGTATTTATGTTCCACTAAACTCCTTAACCATCTCTATGGTTCCTTAA

Protein sequence

MLSLYDDRPFLLGVMLECSNSINYSDKDREGVGEGKGERERKRGRANSNCSGQRAYRDISISNIVAAKVTKEGDYVQRYVFGLRLFHGHKSIYVPLNSLTISMVP*
Homology
[Close]
BLAST of Csa6G517110 vs. TrEMBL
Match: A0A0A0KI11_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G517110 PE=4 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 7.9e-53
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 1 

Query: 1   MLSLYDDRPFLLGVMLECSNSINYSDKDREGVGEGKGERERKRGRANSNCSGQRAYRDIS 60
           MLSLYDDRPFLLGVMLECSNSINYSDKDREGVGEGKGERERKRGRANSNCSGQRAYRDIS
Sbjct: 1   MLSLYDDRPFLLGVMLECSNSINYSDKDREGVGEGKGERERKRGRANSNCSGQRAYRDIS 60

Query: 61  ISNIVAAKVTKEGDYVQRYVFGLRLFHGHKSIYVPLNSLTISMVP 106
           ISNIVAAKVTKEGDYVQRYVFGLRLFHGHKSIYVPLNSLTISMVP
Sbjct: 61  ISNIVAAKVTKEGDYVQRYVFGLRLFHGHKSIYVPLNSLTISMVP 105

[Close]
BLAST of Csa6G517110 vs. NCBI nr
Match: gi|700193999|gb|KGN49203.1| (hypothetical protein Csa_6G517110 [Cucumis sativus])

HSP 1 Score: 214.2 bits (544), Expect = 1.1e-52
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 1 

Query: 1   MLSLYDDRPFLLGVMLECSNSINYSDKDREGVGEGKGERERKRGRANSNCSGQRAYRDIS 60
           MLSLYDDRPFLLGVMLECSNSINYSDKDREGVGEGKGERERKRGRANSNCSGQRAYRDIS
Sbjct: 1   MLSLYDDRPFLLGVMLECSNSINYSDKDREGVGEGKGERERKRGRANSNCSGQRAYRDIS 60

Query: 61  ISNIVAAKVTKEGDYVQRYVFGLRLFHGHKSIYVPLNSLTISMVP 106
           ISNIVAAKVTKEGDYVQRYVFGLRLFHGHKSIYVPLNSLTISMVP
Sbjct: 61  ISNIVAAKVTKEGDYVQRYVFGLRLFHGHKSIYVPLNSLTISMVP 105

The following BLAST results are available for this feature:
BLAST of Csa6G517110 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KI11_CUCSA7.9e-53100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G517110 PE=4 SV=1[more]
BLAST of Csa6G517110 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700193999|gb|KGN49203.1|1.1e-52100.00hypothetical protein Csa_6G517110 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU112333cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa6G517110.1Csa6G517110.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU112333CU112333transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa6G517110ClCG01G022740Watermelon (Charleston Gray)cuwcgB432
Csa6G517110Cla97C01G022620Watermelon (97103) v2cuwmbB412
Csa6G517110CSPI06G34380Wild cucumber (PI 183967)cpicuB313
Csa6G517110CmaCh07G002650Cucurbita maxima (Rimu)cmacuB877
Csa6G517110Cp4.1LG19g07390Cucurbita pepo (Zucchini)cpecuB503
Csa6G517110CsGy6G033950Cucumber (Gy14) v2cgybcuB281
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa6G517110Bottle gourd (USVL1VR-Ls)culsiB434
Csa6G517110Bottle gourd (USVL1VR-Ls)culsiB438
Csa6G517110Melon (DHL92) v3.6.1cumedB486
Csa6G517110Silver-seed gourdcarcuB0168
Csa6G517110Silver-seed gourdcarcuB0663
Csa6G517110Silver-seed gourdcarcuB0948
Csa6G517110Silver-seed gourdcarcuB0964
Csa6G517110Watermelon (97103) v2cuwmbB449
Csa6G517110Wax gourdcuwgoB628
Csa6G517110Cucumber (Chinese Long) v2cucuB035
Csa6G517110Cucumber (Gy14) v1cgycuB027
Csa6G517110Cucumber (Gy14) v1cgycuB172
Csa6G517110Cucurbita maxima (Rimu)cmacuB229
Csa6G517110Cucurbita maxima (Rimu)cmacuB422
Csa6G517110Cucurbita maxima (Rimu)cmacuB640
Csa6G517110Cucurbita maxima (Rimu)cmacuB681
Csa6G517110Cucurbita moschata (Rifu)cmocuB215
Csa6G517110Cucurbita moschata (Rifu)cmocuB412
Csa6G517110Cucurbita moschata (Rifu)cmocuB670
Csa6G517110Cucurbita moschata (Rifu)cmocuB865
Csa6G517110Melon (DHL92) v3.5.1cumeB458
Csa6G517110Melon (DHL92) v3.5.1cumeB507
Csa6G517110Watermelon (Charleston Gray)cuwcgB460
Csa6G517110Watermelon (97103) v1cuwmB477
Csa6G517110Watermelon (97103) v1cuwmB500
Csa6G517110Cucurbita pepo (Zucchini)cpecuB053
Csa6G517110Cucurbita pepo (Zucchini)cpecuB085
Csa6G517110Cucurbita pepo (Zucchini)cpecuB525