CsGy6G033950 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy6G033950
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Uncharacterized protein
Location	Chr6 : 30397802 .. 30402292 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CGACGATTTTGCCATATTTCTTCCTTTCGATTTTCCCGGGAAAATTCGAGGAGTGATTTTCAAATTGGTTTTATTTACCCTGATGCCAATCTCATCTCCGTGTTGAATTGGAGATCTGCTTCGTGAAGTAGATTATTAACTATGGATTTCGATTTCTCATTGCGCTTTGATTATGCAGTTTCAAGGCAATGGCAATTGTCTTGGATGGAACTGACTCGGGCGGTGATTGGGAGTTATTGCGAAATTTCGATTGCGTTGAGTGCGGTGCATTGGTGTCAAACAGTATTCGACTGGATTCATAATCTACGAAAGATTGGAGCACTGCTAGTTCTTTACTTCTATTCCACTGTAGAGGTCAAATAACTGATCAGGCTACCTGGCTTTCTCTCTCTCTCTCTCTCTCTCTCTATATATATATATATATATAAAACAATGATCGGAAACTCTTGATTTGTTAAAGATGGGTTAGGCCTGATCTTGAAAATTCCTCACTACGTTGCCTACTCATGAATTTAATAAAATAGCTTCTGCCGTTAAAAAATATTAGGGCAGCGAATTCACGTTGCTTCAAAGTTGGAGTCGATTGAGTATAACAGGCGAAGTACAGTTGGGAAGTTATTTTATCTATTTTATTCGCGTCAAAGGAATTGACATCCCGGTCGAGCGTGCGTAAAATCTAATGGTGTAGTCTGCTGTTTTGACAATTGTGTGGAAGATTTAAACGTTATCTATAATTTAGTATTTTTTTTCTTCTTAATTTAACTTGCAGGCGATGTAAACAAAATCAGGAAAGGGGGCTTAACGAAGTAAAGGCTAGGGACGTGCTGACGTTGGTCGGAAATTCTGGATGGAGTCTGGGAAGAAATGTGTCCTGTCGTTTCATTTGATGGGCATTATATGGATTCCGTGTGTTTCTTTTTCTATTGGGTATTTTCCGTCTTTTTTTCACTGGTACCGTCTCCACACTACTATTTGCTAATCATGTATTTCCTTATACATGAAGTGTAGATAAAAAGTTGAGTCAAAGTATGGCAGATTGGGCAACAGTGAAGGATGCAGTATGACTTGGGTATTTGAAATGCAGGTGAGAAAGTTAAAGATTTGAAATCACCAACATATGATGTGCTCTTAACGTTTTGGAGATTACTCAGATAACTACTAACCAATAATTAAGAGCATTCATAGTTTTTTTACAGAAGACAAGCACTGATAATTTGTTAAACTATCATTTTGATATTTGTGGGTGTGCTAGACCAGTTTGAGATAACCACTAACAAAGATCATTGATGGTTAAACTATCATTTTGATATTTGTGAGTGTTCTAGACCAACTGCGCACATATTCTCACGATATATACTCATCGAAGTTTTATGCTCTCAGTTTACATTTACTTATTTGAGAAACATGTGAATCAATAGTTTTTATATGAAATACTCCGCTCTTTCATGGAATAGCTTCCTGTAATAGAAAAGTTTGATGGAAGAGTAGGATAGAGCAATTGCATTGCTTGCTTTTATAGATGTTTCCAACTGCGCTTTTGTGAAGACGTCCTTGGACACATGCTACAAATTACAATTCCTTGAACTCAGCTGGGTGAAGGCTGTTATCATTACTAACCAGAAACATGCACAAGGTTAGCCTGCTTTTCCGATGTTTTTATTTATTTATTTTTTATTTGTGGATTTGCTTTACTAGACATCTGTTTTTTACCACTGTCATATTACAAGAAAATACGAAACTATGGTCGTCCATGAGTATTTATTTTCTTTTTGAATGAAAGAACAAAGTGGCCTAAAAAAACCATCATGAACCAAAAAGTCGCCACTAGAACCACAATTACTGAACAGTTCTGCAATTGTGGGTCATCACAAAAAATATAATACAAATTGTTGCAAGAAATACAAAGAGAGTATTAAAGTGAACTTCTCATCACACTTCCCCCAAGAACTACCCTTTCCATGAAAAGCTCGTCTGTTCTTCTCCCACCTAATATTCCATAACACAGTGAAGAAACCAATATGTCATAGGATTCTTTACCTCTCTTCCGAAAGCAAGGAGGCAACAATACCTCTTTCGGGCGTAGGACACTCTCAGTCTCAGCCAAAACAACTTGTAATGACTGAAAAAAAAACCTAAAATGGACTTTCCTGAAAAAGGGCAAAGCAGAAAGATTTTATTTTAGTTTGACTGGATTCTCTTCGTCTCATTCTACATTTGCTGTATCTACGAAATACTTCGATGTGGCTATGCTTCATTCTTTGGCAGATATAAGTTATCTGTTGCTTTATAATTGCGGGAAATAGGGATATATGATGGAAAATCATTCTCTTAATTTCAAAGTTTAACAAATTTACCGAGTAACGAGGGAATGATTCCCTTTGTGTGGGCTCAATCCTCAAACTTTGGCACCGTTCCCTTTCGAGAATGTTGAATAATTCTATTATCGCCCCTTAATTTTACTATGCTCTACCGCTACCCTTTTTTTTGGCTTTTTGTTTCTCTTTTCTCTGCAGGTTCCATACAAGTTTGATATTGATTCTCTTCACAGATATTAGCAGATCATATCTGTTTTGATCTTCTTACATCAATGCAATATCGAAACATTTTTTTTCCCATTCCTTATTCTGAATCTCTGATTCATTCTCATCCACATTCCTTACACCCCTCCTGCATTCTACTATTTTACTAAAGTATAATTCACCCCCGAAGTAATGGATGTCTGAATATGGCCAATATTATATGCCTGTATTGTTCTAGTTTCACTTCCTTGTGCTAACATGGAAAATACAGTCAAGATTATTTTAACTTTTTAGCTCATCAATTTAACATGGTGATTGAATTCGCATTAAAATTAGAACCTCTAAGAAACTTGAAGATGGAATTCAAATTGAATCTCAGTTTCATGATACCATTTTACAAATATCTTTTGCTTTTCTGAACCTTCCTGATAAAGTCGACCATTTAATACTAAGTTGCAAATGGTGAATTATGCCCCATAGGAAGATTTGTTTAGTGACTTCTCAGTAATTTTGGCATATGATTTGATTCAACTTCAAATTCAAAACTGTGCGAACTCTGTTCATCGCTAGGTTTGAAGAGGGGCCGGACGGACCCTAAGTTATGACAAAGATTTCAGGCTTTTTCTGAGCAGAACAGTACTGTTAACTTAAATAATTATGCCAGAATGAGTCTAATTTAACTAGTTGAAAATTTTAATTATCCGTCTCATTAACCCAAAATAATTGTATTTCTACATTCACTTTCTTTCCAACTCTATCACTTGTTTGCATCTTTAAAACTTTGCAGAAGATTCAATTTCAGCTGTTAGAAAATAACCGAAGTGGGGCTGTCTGGAAAGTAAATGAAATAGATACTAAACACTTGGATTGCCGTATGGGTAGATGAAAGAACCTAAATGAAGGAGTGGATTGATCAAGGATGACAAAGGAGACCTTAGGATCAGTTTCTCTCAAAACAAAACCAAGACCAAAATCGATTAATAATTGTAGATCATATCATAAGCATAGATATACAGAAATGGAACTAGATGGCTTCTAATCAAGAAAGAAGAAGAAAATGAACAGGCAAAGTGTCAATCTGCCTATCAAGAAAATTCACTCAGATTTCACCAAAAGTACAAAAACCCACATGGCAGAGTGATTCAAATTTGAACTAGCTTGAAATTTAGCATGTGTTTCACTTGCGACAGCTTCAAATTTGCATAATCCATCGTCAAAATTTAGAGCGTAGCTGCAAGGATCATACTGAAACCTGAACTGCTGCTTGCTTCCGTTCTTGATGGCTTTCTTCATCGCAGCTCTCATCCTCCAGAACAGTTTCTTGAATTGCTTTCTACTGTAAGTATTCATCCATTCTATGCCTCCCACAAATCCCATTTATACAACGTCAACCTCTAAACTCTAAAATTTCTGCTGCTAATCCCAAAATGTCTTGAAATGAAGAGCAGGTTGTGATAGTTTCTGGGTATTTGAGGAAGATTATAAAGGATTCACAGACACAGAGACAAACAATAGCAGTTGCAATCTGAGGTTTGTGCAGAAGTGTCAGAACCAAAACAACAAAAGACGATTCGCCTTTTTGTATACAGAAGGAGGGCGAAATGAGAGAGGGCAAAGCGTAATCTTTTGGCCTTCCAATGAAGCTGCGCAGTTTATGTTGAGCCTCTACGATGATCGGCCTTTTCTCCTTGGAGTCATGTTGGAATGCTCAAATTCCATCAACTACAGCGATAAAGACAGAGAAGGAGTAGGAGAAGGAAAAGGAGAGAGAGAGAGAAAGAGAGGGAGAGCTAATAGCAATTGCAGTGGGCAGAGAGCCTACAGAGACATATCAATATCGAATATTGTTGCGGCAAAAGTAACGAAGGAAGGTGACTATGTTCAACGGTATGTCTTCGGTCTTCGCCTCTTTCACGGGCATAAAAGTATTTATGTTCCACTAAACTCCTTAACCATCTCTATGGTTCCTTAA

mRNA sequence

CGACGATTTTGCCATATTTCTTCCTTTCGATTTTCCCGGGAAAATTCGAGGAGTGATTTTCAAATTGGTTTTATTTACCCTGATGCCAATCTCATCTCCGTGTTGAATTGGAGATCTGCTTCGTGAAGTAGATTATTAACTATGGATTTCGATTTCTCATTGCGCTTTGATTATGCAGTTTCAAGGCAATGGCAATTGTCTTGGATGGAACTGACTCGGGCGGTGATTGGGAGTTATTGCGAAATTTCGATTGCGTTGAGTGCGGTGCATTGGTGTCAAACAGTATTCGACTGGATTCATAATCTACGAAAGATTGGAGCACTGCTAGTTCTTTACTTCTATTCCACTGTAGAGGCGAAGTACAGTTGGGAAGTTATTTTATCTATTTTATTCGCGTCAAAGGAATTGACATCCCGGCGATGTAAACAAAATCAGGAAAGGGGGCTTAACGAAGTAAAGGCTAGGGACGTGCTGACGTTGGTCGGAAATTCTGGATGGAGTCTGGGAAGAAATAGCGTAGCTGCAAGGATCATACTGAAACCTGAACTGCTGCTTGCTTCCGTTCTTGATGGCTTTCTTCATCGCAGCTCTCATCCTCCAGAACAGTTTCTTGAATTGCTTTCTACTAAGTGTCAGAACCAAAACAACAAAAGACGATTCGCCTTTTTGTATACAGAAGGAGGGCGAAATGAGAGAGGGCAAAGCGTAATCTTTTGGCCTTCCAATGAAGCTGCGCAGTTTATGTTGAGCCTCTACGATGATCGGCCTTTTCTCCTTGGAGTCATGTTGGAATGCTCAAATTCCATCAACTACAGCGATAAAGACAGAGAAGGAGTAGGAGAAGGAAAAGGAGAGAGAGAGAGAAAGAGAGGGAGAGCTAATAGCAATTGCAGTGGGCAGAGAGCCTACAGAGACATATCAATATCGAATATTGTTGCGGCAAAAGTAACGAAGGAAGGTGACTATGTTCAACGGTATGTCTTCGGTCTTCGCCTCTTTCACGGGCATAAAAGTATTTATGTTCCACTAAACTCCTTAACCATCTCTATGGTTCCTTAA

Coding sequence (CDS)

ATGGATTTCGATTTCTCATTGCGCTTTGATTATGCAGTTTCAAGGCAATGGCAATTGTCTTGGATGGAACTGACTCGGGCGGTGATTGGGAGTTATTGCGAAATTTCGATTGCGTTGAGTGCGGTGCATTGGTGTCAAACAGTATTCGACTGGATTCATAATCTACGAAAGATTGGAGCACTGCTAGTTCTTTACTTCTATTCCACTGTAGAGGCGAAGTACAGTTGGGAAGTTATTTTATCTATTTTATTCGCGTCAAAGGAATTGACATCCCGGCGATGTAAACAAAATCAGGAAAGGGGGCTTAACGAAGTAAAGGCTAGGGACGTGCTGACGTTGGTCGGAAATTCTGGATGGAGTCTGGGAAGAAATAGCGTAGCTGCAAGGATCATACTGAAACCTGAACTGCTGCTTGCTTCCGTTCTTGATGGCTTTCTTCATCGCAGCTCTCATCCTCCAGAACAGTTTCTTGAATTGCTTTCTACTAAGTGTCAGAACCAAAACAACAAAAGACGATTCGCCTTTTTGTATACAGAAGGAGGGCGAAATGAGAGAGGGCAAAGCGTAATCTTTTGGCCTTCCAATGAAGCTGCGCAGTTTATGTTGAGCCTCTACGATGATCGGCCTTTTCTCCTTGGAGTCATGTTGGAATGCTCAAATTCCATCAACTACAGCGATAAAGACAGAGAAGGAGTAGGAGAAGGAAAAGGAGAGAGAGAGAGAAAGAGAGGGAGAGCTAATAGCAATTGCAGTGGGCAGAGAGCCTACAGAGACATATCAATATCGAATATTGTTGCGGCAAAAGTAACGAAGGAAGGTGACTATGTTCAACGGTATGTCTTCGGTCTTCGCCTCTTTCACGGGCATAAAAGTATTTATGTTCCACTAAACTCCTTAACCATCTCTATGGTTCCTTAA

Protein sequence

MDFDFSLRFDYAVSRQWQLSWMELTRAVIGSYCEISIALSAVHWCQTVFDWIHNLRKIGALLVLYFYSTVEAKYSWEVILSILFASKELTSRRCKQNQERGLNEVKARDVLTLVGNSGWSLGRNSVAARIILKPELLLASVLDGFLHRSSHPPEQFLELLSTKCQNQNNKRRFAFLYTEGGRNERGQSVIFWPSNEAAQFMLSLYDDRPFLLGVMLECSNSINYSDKDREGVGEGKGERERKRGRANSNCSGQRAYRDISISNIVAAKVTKEGDYVQRYVFGLRLFHGHKSIYVPLNSLTISMVP

Homology

[Close]

BLAST of CsGy6G033950 vs. NCBI nr
Match: KGN49203.1 (hypothetical protein Csa_6G517110 [Cucumis sativus])

HSP 1 Score: 154.5 bits (389), Expect = 6.0e-34
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0


Query: 201 MLSLYDDRPFLLGVMLECSNSINYSXXXXXXXXXXXXXXXXXXXXXXXXXSGQRAYRDIS 260
           MLSLYDDRPFLLGVMLECSNSINYSXXXXXXXXXXXXXXXXXXXXXXXXXSGQRAYRDIS
Sbjct: 1   MLSLYDDRPFLLGVMLECSNSINYSXXXXXXXXXXXXXXXXXXXXXXXXXSGQRAYRDIS 60

Query: 261 ISNIVAAKVTKEGDYVQRYVFGLRLFHGHKSIYVPLNSLTISMVP 306
           ISNIVAAKVTKEGDYVQRYVFGLRLFHGHKSIYVPLNSLTISMVP
Sbjct: 61  ISNIVAAKVTKEGDYVQRYVFGLRLFHGHKSIYVPLNSLTISMVP 105

[Close]

BLAST of CsGy6G033950 vs. NCBI nr
Match: KGN49204.1 (hypothetical protein Csa_6G517120 [Cucumis sativus])

HSP 1 Score: 76.3 bits (186), Expect = 2.1e-10
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 0


Query: 125 SVAARIILKPELLLASVLDGFLHRSSHPPEQFLELLST 163
           SVAARIILKPELLLASVLDGFLHRSSHPPEQFLELLST
Sbjct: 21  SVAARIILKPELLLASVLDGFLHRSSHPPEQFLELLST 58

[Close]

BLAST of CsGy6G033950 vs. TrEMBL
Match: tr|A0A0A0KI11|A0A0A0KI11_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G517110 PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 4.0e-34
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0


Query: 201 MLSLYDDRPFLLGVMLECSNSINYSXXXXXXXXXXXXXXXXXXXXXXXXXSGQRAYRDIS 260
           MLSLYDDRPFLLGVMLECSNSINYSXXXXXXXXXXXXXXXXXXXXXXXXXSGQRAYRDIS
Sbjct: 1   MLSLYDDRPFLLGVMLECSNSINYSXXXXXXXXXXXXXXXXXXXXXXXXXSGQRAYRDIS 60

Query: 261 ISNIVAAKVTKEGDYVQRYVFGLRLFHGHKSIYVPLNSLTISMVP 306
           ISNIVAAKVTKEGDYVQRYVFGLRLFHGHKSIYVPLNSLTISMVP
Sbjct: 61  ISNIVAAKVTKEGDYVQRYVFGLRLFHGHKSIYVPLNSLTISMVP 105

[Close]

BLAST of CsGy6G033950 vs. TrEMBL
Match: tr|A0A0A0KK41|A0A0A0KK41_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G517120 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.4e-10
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 0


Query: 125 SVAARIILKPELLLASVLDGFLHRSSHPPEQFLELLST 163
           SVAARIILKPELLLASVLDGFLHRSSHPPEQFLELLST
Sbjct: 21  SVAARIILKPELLLASVLDGFLHRSSHPPEQFLELLST 58

The following BLAST results are available for this feature:

BLAST of CsGy6G033950 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN49203.1	6.0e-34	100.00	hypothetical protein Csa_6G517110 [Cucumis sativus]	[more]
KGN49204.1	2.1e-10	100.00	hypothetical protein Csa_6G517120 [Cucumis sativus]	[more]

BLAST of CsGy6G033950 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy6G033950 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy6G033950 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KI11\|A0A0A0KI11_CUCSA	4.0e-34	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G517110 PE=4 SV=1	[more]
tr\|A0A0A0KK41\|A0A0A0KK41_CUCSA	1.4e-10	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G517120 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy6G033950.1	CsGy6G033950.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 227..247
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 227..250

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy6G033950	Csa6G517110	Cucumber (Chinese Long) v2	cgybcuB281
CsGy6G033950	ClCG01G022740	Watermelon (Charleston Gray)	cgybwcgB399
CsGy6G033950	CSPI06G34380	Wild cucumber (PI 183967)	cgybcpiB287
CsGy6G033950	CmaCh07G002650	Cucurbita maxima (Rimu)	cgybcmaB861
CsGy6G033950	Lsi01G003380	Bottle gourd (USVL1VR-Ls)	cgyblsiB398
CsGy6G033950	Cp4.1LG19g07390	Cucurbita pepo (Zucchini)	cgybcpeB810
CsGy6G033950	CsaV3_6G049890	Cucumber (Chinese Long) v3	cgybcucB298
CsGy6G033950	Cla97C01G022620	Watermelon (97103) v2	cgybwmbB394

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy6G033950	Cucumber (Gy14) v2	cgybcgybB035
CsGy6G033950	Cucumber (Gy14) v2	cgybcgybB153
CsGy6G033950	Cucurbita maxima (Rimu)	cgybcmaB703
CsGy6G033950	Cucurbita maxima (Rimu)	cgybcmaB776
CsGy6G033950	Cucurbita maxima (Rimu)	cgybcmaB831
CsGy6G033950	Cucurbita moschata (Rifu)	cgybcmoB686
CsGy6G033950	Cucurbita moschata (Rifu)	cgybcmoB756
CsGy6G033950	Cucurbita moschata (Rifu)	cgybcmoB811
CsGy6G033950	Cucurbita moschata (Rifu)	cgybcmoB843
CsGy6G033950	Cucurbita pepo (Zucchini)	cgybcpeB710
CsGy6G033950	Cucurbita pepo (Zucchini)	cgybcpeB813
CsGy6G033950	Cucurbita pepo (Zucchini)	cgybcpeB825
CsGy6G033950	Cucurbita pepo (Zucchini)	cgybcpeB874
CsGy6G033950	Cucumber (Chinese Long) v2	cgybcuB239
CsGy6G033950	Cucumber (Chinese Long) v2	cgybcuB289
CsGy6G033950	Melon (DHL92) v3.5.1	cgybmeB397
CsGy6G033950	Melon (DHL92) v3.5.1	cgybmeB445
CsGy6G033950	Melon (DHL92) v3.6.1	cgybmedB442
CsGy6G033950	Watermelon (97103) v1	cgybwmB448
CsGy6G033950	Watermelon (97103) v1	cgybwmB468
CsGy6G033950	Silver-seed gourd	carcgybB0640
CsGy6G033950	Silver-seed gourd	carcgybB0922
CsGy6G033950	Wax gourd	cgybwgoB598