Csa6G499750 (gene) Cucumber (Chinese Long) v2

NameCsa6G499750
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
Description40S ribosomal protein S6; contains IPR001377 (Ribosomal protein S6e)
LocationChr6 : 24803136 .. 24804352 (+)
   



The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGGTTCGGCCTCGTTTCGAATCCAGACCTCAGGGAGTCTCGTCAATGGCTCAAGCCCACACACTCATCGAATATCGTAAACCAATTCACAAAAGGCCGCACTGTTTTGTGGAAAAAAGAACAACGTTCTCAATTCTTTCTCATCACGCATCGGCTAAAATGTAATATACCCTCAAAGTCAAAGCACAATATCCCTAATTCGTTGCCAAGATGAAGGTTTGTATGAATCTCCATTCTTCTCGTACTGAACTATTGCACTGTCCAATTTTTTTTTATGTAGAATTTGACACGTTTTCTACTCCTTCCCTTTCAGTTCAACATTGCTACTCCCACTACTGGGTGCCAGAAAAAGCTCCAAATCGATGACGATGCTAAACTGTAAGGAATTTTCTTTGTATATCGTACTGTTACCATCTCATTCTTCTTTCATTCTGTTGGTGGAAGTATCGGTTTTAGGGGTCCAAGAATATGAAACTTGGGATGCTTATAGCACAAAGTTTTTTCTTACTGATTTTAACAGTGTGATTTTTGCTCGAAGGATTAGGAAGCAATGAACATGCTGCTTATTTTTATTTATTTAATTTCTTTATATTGTTCAGTAATTGTTTCATTAGTATGTATGATATTTCGTTTGGGGAACTTATAATTATCTGTGGAGTTGGCCTGCAAACTGGAAGCCTTTTCTTTTGCATTTCGTTACGACGTTAGTCTTTTTGTTCACACATTATCACAGATCCCCATTCTCGCTTAAATTTCCGTCTTTAGAAATGGAAGTTTCTTCTAGTATTCCAAAATCATGGATATTATAGGAGATTTGATTACTTTTCTCACGAAACAAATTATCTGAAATCTAAACATAGCTGGATTCTGGTATCTGGTTTCGTGGGATTATTTGACTCTCTTAGTATCAAGTTTTTCATGTAGTGTTAGCTGTGACGAATTTGACTTGACTTGTCATATTGGGACAAGTGGGTCTCTCATTTGGAATATCCTTACAGTTCATTAGAATTTGTAGTCACACTTTAATGTTCTTAATGCAGCCGACCATTTTGGGACAAGAGGATCTCCCAAGAAGTTAATGGAGATGCGCTTGGTGAAGTAAGTTTTCTGTTGGTATCTTTTTCATTACATTATAATCAAGTATTTTTCATTTCATCTGTCATGTTATTAACTTAGATGATCTTTTGGCAGGAGTTTAAAAAGGTTATATTTTAA

mRNA sequence

ATGTGGTTCGGCCTCGTTTCGAATCCAGACCTCAGGGAGTCTCGTCAATGGCTCAAGCCCACACACTCATCGAATATCTTCAACATTGCTACTCCCACTACTGGGTGCCAGAAAAAGCTCCAAATCGATGACGATGCTAAACTCCGACCATTTTGGGACAAGAGGATCTCCCAAGAAGTTAATGGAGATGCGCTTGGTGAAGAGTTTAAAAAGGTTATATTTTAA

Coding sequence (CDS)

ATGTGGTTCGGCCTCGTTTCGAATCCAGACCTCAGGGAGTCTCGTCAATGGCTCAAGCCCACACACTCATCGAATATCTTCAACATTGCTACTCCCACTACTGGGTGCCAGAAAAAGCTCCAAATCGATGACGATGCTAAACTCCGACCATTTTGGGACAAGAGGATCTCCCAAGAAGTTAATGGAGATGCGCTTGGTGAAGAGTTTAAAAAGGTTATATTTTAA

Protein sequence

MWFGLVSNPDLRESRQWLKPTHSSNIFNIATPTTGCQKKLQIDDDAKLRPFWDKRISQEVNGDALGEEFKKVIF*
BLAST of Csa6G499750 vs. Swiss-Prot
Match: RS6_ASPOF (40S ribosomal protein S6 OS=Asparagus officinalis GN=rps6 PE=2 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 6.0e-16
Identity = 39/48 (81.25%), Postives = 41/48 (85.42%), Query Frame = 1

Query: 27 FNIATPTTGCQKKLQIDDDAKLRPFWDKRISQEVNGDALGEEFKKVIF 75
          FNIA PTTGCQKKL+IDDD KLR F+DKRISQEV+GDALGEEFK  +F
Sbjct: 3  FNIANPTTGCQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVF 50

BLAST of Csa6G499750 vs. Swiss-Prot
Match: RS61_ARATH (40S ribosomal protein S6-1 OS=Arabidopsis thaliana GN=RPS6A PE=1 SV=2)

HSP 1 Score: 84.0 bits (206), Expect = 7.9e-16
Identity = 38/48 (79.17%), Postives = 41/48 (85.42%), Query Frame = 1

Query: 27 FNIATPTTGCQKKLQIDDDAKLRPFWDKRISQEVNGDALGEEFKKVIF 75
          FN+A PTTGCQKKL+IDDD KLR F+DKRISQEV+GDALGEEFK  +F
Sbjct: 3  FNVANPTTGCQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVF 50

BLAST of Csa6G499750 vs. Swiss-Prot
Match: RS62_ARATH (40S ribosomal protein S6-2 OS=Arabidopsis thaliana GN=RPS6B PE=1 SV=3)

HSP 1 Score: 82.8 bits (203), Expect = 1.8e-15
Identity = 37/48 (77.08%), Postives = 41/48 (85.42%), Query Frame = 1

Query: 27 FNIATPTTGCQKKLQIDDDAKLRPFWDKRISQEVNGDALGEEFKKVIF 75
          FN+A PTTGCQKKL+IDDD KLR F+DKR+SQEV+GDALGEEFK  +F
Sbjct: 3  FNVANPTTGCQKKLEIDDDQKLRAFFDKRLSQEVSGDALGEEFKGYVF 50

BLAST of Csa6G499750 vs. Swiss-Prot
Match: RS6_APLCA (40S ribosomal protein S6 OS=Aplysia californica GN=RPS6 PE=2 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.4e-09
Identity = 26/43 (60.47%), Postives = 34/43 (79.07%), Query Frame = 1

Query: 28 NIATPTTGCQKKLQIDDDAKLRPFWDKRISQEVNGDALGEEFK 71
          NI+ P TGCQK +++DD+ KLRPF+DKRIS E++ D LG+E+K
Sbjct: 4  NISYPATGCQKLIEVDDEKKLRPFYDKRISAELSADCLGDEWK 46

BLAST of Csa6G499750 vs. Swiss-Prot
Match: RS6_ASHGO (40S ribosomal protein S6 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=RPS6 PE=3 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 7.1e-09
Identity = 25/47 (53.19%), Postives = 35/47 (74.47%), Query Frame = 1

Query: 28 NIATPTTGCQKKLQIDDDAKLRPFWDKRISQEVNGDALGEEFKKVIF 75
          NI+ P  G QK +++DD+ ++R F+DKRI QEVNG+A+G+EFK  +F
Sbjct: 4  NISYPVNGTQKTIEVDDEHRVRVFYDKRIGQEVNGEAVGDEFKGYVF 50

BLAST of Csa6G499750 vs. TrEMBL
Match: A0A0A0KLV0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G499750 PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 2.8e-36
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 1

Query: 1  MWFGLVSNPDLRESRQWLKPTHSSNIFNIATPTTGCQKKLQIDDDAKLRPFWDKRISQEV 60
          MWFGLVSNPDLRESRQWLKPTHSSNIFNIATPTTGCQKKLQIDDDAKLRPFWDKRISQEV
Sbjct: 1  MWFGLVSNPDLRESRQWLKPTHSSNIFNIATPTTGCQKKLQIDDDAKLRPFWDKRISQEV 60

Query: 61 NGDALGEEFKKVIF 75
          NGDALGEEFKKVIF
Sbjct: 61 NGDALGEEFKKVIF 74

BLAST of Csa6G499750 vs. TrEMBL
Match: M5VZU7_PRUPE (40S ribosomal protein S6 OS=Prunus persica GN=PRUPE_ppa010485mg PE=3 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 4.2e-16
Identity = 42/48 (87.50%), Postives = 44/48 (91.67%), Query Frame = 1

Query: 27 FNIATPTTGCQKKLQIDDDAKLRPFWDKRISQEVNGDALGEEFKKVIF 75
          FNIA PTTGCQKKL+IDDDAKLR FWDKRISQEVNGDALGEEFK  +F
Sbjct: 3  FNIANPTTGCQKKLEIDDDAKLRAFWDKRISQEVNGDALGEEFKGYVF 50

BLAST of Csa6G499750 vs. TrEMBL
Match: A0A0L9U4F1_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan03g108500 PE=3 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 5.5e-16
Identity = 42/54 (77.78%), Postives = 46/54 (85.19%), Query Frame = 1

Query: 21  THSSNIFNIATPTTGCQKKLQIDDDAKLRPFWDKRISQEVNGDALGEEFKKVIF 75
           + S  +FNIA PTTGCQKKL+IDDD KLR FWDKRISQEVNGDALGEEFK  +F
Sbjct: 277 SQSGLLFNIANPTTGCQKKLEIDDDQKLRAFWDKRISQEVNGDALGEEFKGYVF 330

BLAST of Csa6G499750 vs. TrEMBL
Match: A0A0B2P5P4_GLYSO (40S ribosomal protein S6 (Fragment) OS=Glycine soja GN=glysoja_038993 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 1.6e-15
Identity = 41/48 (85.42%), Postives = 43/48 (89.58%), Query Frame = 1

Query: 27 FNIATPTTGCQKKLQIDDDAKLRPFWDKRISQEVNGDALGEEFKKVIF 75
          FNIA PTTGCQKKL+IDDD KLR FWDKRISQEVNGDALGEEFK  +F
Sbjct: 1  FNIANPTTGCQKKLEIDDDQKLRAFWDKRISQEVNGDALGEEFKGYVF 48

BLAST of Csa6G499750 vs. TrEMBL
Match: T2DPJ8_PHAVU (40S ribosomal protein S6 OS=Phaseolus vulgaris GN=PHAVU_008G135700g PE=2 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 1.6e-15
Identity = 41/48 (85.42%), Postives = 43/48 (89.58%), Query Frame = 1

Query: 27 FNIATPTTGCQKKLQIDDDAKLRPFWDKRISQEVNGDALGEEFKKVIF 75
          FNIA PTTGCQKKL+IDDD KLR FWDKRISQEVNGDALGEEFK  +F
Sbjct: 3  FNIANPTTGCQKKLEIDDDLKLRAFWDKRISQEVNGDALGEEFKGYVF 50

BLAST of Csa6G499750 vs. TAIR10
Match: AT4G31700.1 (AT4G31700.1 ribosomal protein S6)

HSP 1 Score: 84.0 bits (206), Expect = 4.4e-17
Identity = 38/48 (79.17%), Postives = 41/48 (85.42%), Query Frame = 1

Query: 27 FNIATPTTGCQKKLQIDDDAKLRPFWDKRISQEVNGDALGEEFKKVIF 75
          FN+A PTTGCQKKL+IDDD KLR F+DKRISQEV+GDALGEEFK  +F
Sbjct: 3  FNVANPTTGCQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVF 50

BLAST of Csa6G499750 vs. TAIR10
Match: AT5G10360.1 (AT5G10360.1 Ribosomal protein S6e)

HSP 1 Score: 82.8 bits (203), Expect = 9.9e-17
Identity = 37/48 (77.08%), Postives = 41/48 (85.42%), Query Frame = 1

Query: 27 FNIATPTTGCQKKLQIDDDAKLRPFWDKRISQEVNGDALGEEFKKVIF 75
          FN+A PTTGCQKKL+IDDD KLR F+DKR+SQEV+GDALGEEFK  +F
Sbjct: 3  FNVANPTTGCQKKLEIDDDQKLRAFFDKRLSQEVSGDALGEEFKGYVF 50

BLAST of Csa6G499750 vs. NCBI nr
Match: gi|700193527|gb|KGN48731.1| (hypothetical protein Csa_6G499750 [Cucumis sativus])

HSP 1 Score: 158.7 bits (400), Expect = 4.0e-36
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 1

Query: 1  MWFGLVSNPDLRESRQWLKPTHSSNIFNIATPTTGCQKKLQIDDDAKLRPFWDKRISQEV 60
          MWFGLVSNPDLRESRQWLKPTHSSNIFNIATPTTGCQKKLQIDDDAKLRPFWDKRISQEV
Sbjct: 1  MWFGLVSNPDLRESRQWLKPTHSSNIFNIATPTTGCQKKLQIDDDAKLRPFWDKRISQEV 60

Query: 61 NGDALGEEFKKVIF 75
          NGDALGEEFKKVIF
Sbjct: 61 NGDALGEEFKKVIF 74

BLAST of Csa6G499750 vs. NCBI nr
Match: gi|778719103|ref|XP_011657963.1| (PREDICTED: LOW QUALITY PROTEIN: 40S ribosomal protein S6-like [Cucumis sativus])

HSP 1 Score: 102.8 bits (255), Expect = 2.6e-19
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 1

Query: 27 FNIATPTTGCQKKLQIDDDAKLRPFWDKRISQEVNGDALGEEFKKVIF 75
          FNIATPTTGCQKKLQIDDDAKLRPFWDKRISQEVNGDALGEEFKKVIF
Sbjct: 3  FNIATPTTGCQKKLQIDDDAKLRPFWDKRISQEVNGDALGEEFKKVIF 50

BLAST of Csa6G499750 vs. NCBI nr
Match: gi|595828959|ref|XP_007205780.1| (hypothetical protein PRUPE_ppa010485mg [Prunus persica])

HSP 1 Score: 91.7 bits (226), Expect = 6.0e-16
Identity = 42/48 (87.50%), Postives = 44/48 (91.67%), Query Frame = 1

Query: 27 FNIATPTTGCQKKLQIDDDAKLRPFWDKRISQEVNGDALGEEFKKVIF 75
          FNIA PTTGCQKKL+IDDDAKLR FWDKRISQEVNGDALGEEFK  +F
Sbjct: 3  FNIANPTTGCQKKLEIDDDAKLRAFWDKRISQEVNGDALGEEFKGYVF 50

BLAST of Csa6G499750 vs. NCBI nr
Match: gi|920694478|gb|KOM37703.1| (hypothetical protein LR48_Vigan03g108500 [Vigna angularis])

HSP 1 Score: 91.3 bits (225), Expect = 7.9e-16
Identity = 42/54 (77.78%), Postives = 46/54 (85.19%), Query Frame = 1

Query: 21  THSSNIFNIATPTTGCQKKLQIDDDAKLRPFWDKRISQEVNGDALGEEFKKVIF 75
           + S  +FNIA PTTGCQKKL+IDDD KLR FWDKRISQEVNGDALGEEFK  +F
Sbjct: 277 SQSGLLFNIANPTTGCQKKLEIDDDQKLRAFWDKRISQEVNGDALGEEFKGYVF 330

BLAST of Csa6G499750 vs. NCBI nr
Match: gi|1009146190|ref|XP_015890747.1| (PREDICTED: 40S ribosomal protein S6 [Ziziphus jujuba])

HSP 1 Score: 90.1 bits (222), Expect = 1.8e-15
Identity = 42/52 (80.77%), Postives = 46/52 (88.46%), Query Frame = 1

Query: 23 SSNIFNIATPTTGCQKKLQIDDDAKLRPFWDKRISQEVNGDALGEEFKKVIF 75
          SSN FNIA P TGCQKKL+IDDD+KLR FWDKRISQEV+GDALGEEFK  +F
Sbjct: 7  SSNAFNIAYPRTGCQKKLEIDDDSKLRVFWDKRISQEVSGDALGEEFKGYVF 58

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
RS6_ASPOF6.0e-1681.2540S ribosomal protein S6 OS=Asparagus officinalis GN=rps6 PE=2 SV=1[more]
RS61_ARATH7.9e-1679.1740S ribosomal protein S6-1 OS=Arabidopsis thaliana GN=RPS6A PE=1 SV=2[more]
RS62_ARATH1.8e-1577.0840S ribosomal protein S6-2 OS=Arabidopsis thaliana GN=RPS6B PE=1 SV=3[more]
RS6_APLCA1.4e-0960.4740S ribosomal protein S6 OS=Aplysia californica GN=RPS6 PE=2 SV=1[more]
RS6_ASHGO7.1e-0953.1940S ribosomal protein S6 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FG... [more]
Match NameE-valueIdentityDescription
A0A0A0KLV0_CUCSA2.8e-36100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G499750 PE=4 SV=1[more]
M5VZU7_PRUPE4.2e-1687.5040S ribosomal protein S6 OS=Prunus persica GN=PRUPE_ppa010485mg PE=3 SV=1[more]
A0A0L9U4F1_PHAAN5.5e-1677.78Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan03g108500 PE=3 SV=1[more]
A0A0B2P5P4_GLYSO1.6e-1585.4240S ribosomal protein S6 (Fragment) OS=Glycine soja GN=glysoja_038993 PE=4 SV=1[more]
T2DPJ8_PHAVU1.6e-1585.4240S ribosomal protein S6 OS=Phaseolus vulgaris GN=PHAVU_008G135700g PE=2 SV=1[more]
Match NameE-valueIdentityDescription
AT4G31700.14.4e-1779.17 ribosomal protein S6[more]
AT5G10360.19.9e-1777.08 Ribosomal protein S6e[more]
Match NameE-valueIdentityDescription
gi|700193527|gb|KGN48731.1|4.0e-36100.00hypothetical protein Csa_6G499750 [Cucumis sativus][more]
gi|778719103|ref|XP_011657963.1|2.6e-19100.00PREDICTED: LOW QUALITY PROTEIN: 40S ribosomal protein S6-like [Cucumis sativus][more]
gi|595828959|ref|XP_007205780.1|6.0e-1687.50hypothetical protein PRUPE_ppa010485mg [Prunus persica][more]
gi|920694478|gb|KOM37703.1|7.9e-1677.78hypothetical protein LR48_Vigan03g108500 [Vigna angularis][more]
gi|1009146190|ref|XP_015890747.1|1.8e-1580.77PREDICTED: 40S ribosomal protein S6 [Ziziphus jujuba][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001377Ribosomal_S6e
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
biological_process GO:0006468 protein phosphorylation
biological_process GO:0042274 ribosomal small subunit biogenesis
biological_process GO:0006364 rRNA processing
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
cellular_component GO:0022627 cytosolic small ribosomal subunit
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0005524 ATP binding
molecular_function GO:0004672 protein kinase activity

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa6G499750.1Csa6G499750.1mRNA


Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001377Ribosomal protein S6ePANTHERPTHR1150240S RIBOSOMAL PROTEIN S6coord: 26..74
score: 2.3
IPR001377Ribosomal protein S6ePFAMPF01092Ribosomal_S6ecoord: 27..73
score: 3.0
NoneNo IPR availablePANTHERPTHR11502:SF10SUBFAMILY NOT NAMEDcoord: 26..74
score: 2.3

The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Csa6G499750Csa2G369060Cucumber (Chinese Long) v2cucuB073