Csa6G499750 (gene) Cucumber (Chinese Long) v2
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGTGGTTCGGCCTCGTTTCGAATCCAGACCTCAGGGAGTCTCGTCAATGGCTCAAGCCCACACACTCATCGAATATCGTAAACCAATTCACAAAAGGCCGCACTGTTTTGTGGAAAAAAGAACAACGTTCTCAATTCTTTCTCATCACGCATCGGCTAAAATGTAATATACCCTCAAAGTCAAAGCACAATATCCCTAATTCGTTGCCAAGATGAAGGTTTGTATGAATCTCCATTCTTCTCGTACTGAACTATTGCACTGTCCAATTTTTTTTTATGTAGAATTTGACACGTTTTCTACTCCTTCCCTTTCAGTTCAACATTGCTACTCCCACTACTGGGTGCCAGAAAAAGCTCCAAATCGATGACGATGCTAAACTGTAAGGAATTTTCTTTGTATATCGTACTGTTACCATCTCATTCTTCTTTCATTCTGTTGGTGGAAGTATCGGTTTTAGGGGTCCAAGAATATGAAACTTGGGATGCTTATAGCACAAAGTTTTTTCTTACTGATTTTAACAGTGTGATTTTTGCTCGAAGGATTAGGAAGCAATGAACATGCTGCTTATTTTTATTTATTTAATTTCTTTATATTGTTCAGTAATTGTTTCATTAGTATGTATGATATTTCGTTTGGGGAACTTATAATTATCTGTGGAGTTGGCCTGCAAACTGGAAGCCTTTTCTTTTGCATTTCGTTACGACGTTAGTCTTTTTGTTCACACATTATCACAGATCCCCATTCTCGCTTAAATTTCCGTCTTTAGAAATGGAAGTTTCTTCTAGTATTCCAAAATCATGGATATTATAGGAGATTTGATTACTTTTCTCACGAAACAAATTATCTGAAATCTAAACATAGCTGGATTCTGGTATCTGGTTTCGTGGGATTATTTGACTCTCTTAGTATCAAGTTTTTCATGTAGTGTTAGCTGTGACGAATTTGACTTGACTTGTCATATTGGGACAAGTGGGTCTCTCATTTGGAATATCCTTACAGTTCATTAGAATTTGTAGTCACACTTTAATGTTCTTAATGCAGCCGACCATTTTGGGACAAGAGGATCTCCCAAGAAGTTAATGGAGATGCGCTTGGTGAAGTAAGTTTTCTGTTGGTATCTTTTTCATTACATTATAATCAAGTATTTTTCATTTCATCTGTCATGTTATTAACTTAGATGATCTTTTGGCAGGAGTTTAAAAAGGTTATATTTTAA ATGTGGTTCGGCCTCGTTTCGAATCCAGACCTCAGGGAGTCTCGTCAATGGCTCAAGCCCACACACTCATCGAATATCTTCAACATTGCTACTCCCACTACTGGGTGCCAGAAAAAGCTCCAAATCGATGACGATGCTAAACTCCGACCATTTTGGGACAAGAGGATCTCCCAAGAAGTTAATGGAGATGCGCTTGGTGAAGAGTTTAAAAAGGTTATATTTTAA ATGTGGTTCGGCCTCGTTTCGAATCCAGACCTCAGGGAGTCTCGTCAATGGCTCAAGCCCACACACTCATCGAATATCTTCAACATTGCTACTCCCACTACTGGGTGCCAGAAAAAGCTCCAAATCGATGACGATGCTAAACTCCGACCATTTTGGGACAAGAGGATCTCCCAAGAAGTTAATGGAGATGCGCTTGGTGAAGAGTTTAAAAAGGTTATATTTTAA MWFGLVSNPDLRESRQWLKPTHSSNIFNIATPTTGCQKKLQIDDDAKLRPFWDKRISQEVNGDALGEEFKKVIF*
BLAST of Csa6G499750 vs. Swiss-Prot
Match: RS6_ASPOF (40S ribosomal protein S6 OS=Asparagus officinalis GN=rps6 PE=2 SV=1) HSP 1 Score: 84.3 bits (207), Expect = 6.0e-16 Identity = 39/48 (81.25%), Postives = 41/48 (85.42%), Query Frame = 1
BLAST of Csa6G499750 vs. Swiss-Prot
Match: RS61_ARATH (40S ribosomal protein S6-1 OS=Arabidopsis thaliana GN=RPS6A PE=1 SV=2) HSP 1 Score: 84.0 bits (206), Expect = 7.9e-16 Identity = 38/48 (79.17%), Postives = 41/48 (85.42%), Query Frame = 1
BLAST of Csa6G499750 vs. Swiss-Prot
Match: RS62_ARATH (40S ribosomal protein S6-2 OS=Arabidopsis thaliana GN=RPS6B PE=1 SV=3) HSP 1 Score: 82.8 bits (203), Expect = 1.8e-15 Identity = 37/48 (77.08%), Postives = 41/48 (85.42%), Query Frame = 1
BLAST of Csa6G499750 vs. Swiss-Prot
Match: RS6_APLCA (40S ribosomal protein S6 OS=Aplysia californica GN=RPS6 PE=2 SV=1) HSP 1 Score: 63.2 bits (152), Expect = 1.4e-09 Identity = 26/43 (60.47%), Postives = 34/43 (79.07%), Query Frame = 1
BLAST of Csa6G499750 vs. Swiss-Prot
Match: RS6_ASHGO (40S ribosomal protein S6 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=RPS6 PE=3 SV=1) HSP 1 Score: 60.8 bits (146), Expect = 7.1e-09 Identity = 25/47 (53.19%), Postives = 35/47 (74.47%), Query Frame = 1
BLAST of Csa6G499750 vs. TrEMBL
Match: A0A0A0KLV0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G499750 PE=4 SV=1) HSP 1 Score: 158.7 bits (400), Expect = 2.8e-36 Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 1
BLAST of Csa6G499750 vs. TrEMBL
Match: M5VZU7_PRUPE (40S ribosomal protein S6 OS=Prunus persica GN=PRUPE_ppa010485mg PE=3 SV=1) HSP 1 Score: 91.7 bits (226), Expect = 4.2e-16 Identity = 42/48 (87.50%), Postives = 44/48 (91.67%), Query Frame = 1
BLAST of Csa6G499750 vs. TrEMBL
Match: A0A0L9U4F1_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan03g108500 PE=3 SV=1) HSP 1 Score: 91.3 bits (225), Expect = 5.5e-16 Identity = 42/54 (77.78%), Postives = 46/54 (85.19%), Query Frame = 1
BLAST of Csa6G499750 vs. TrEMBL
Match: A0A0B2P5P4_GLYSO (40S ribosomal protein S6 (Fragment) OS=Glycine soja GN=glysoja_038993 PE=4 SV=1) HSP 1 Score: 89.7 bits (221), Expect = 1.6e-15 Identity = 41/48 (85.42%), Postives = 43/48 (89.58%), Query Frame = 1
BLAST of Csa6G499750 vs. TrEMBL
Match: T2DPJ8_PHAVU (40S ribosomal protein S6 OS=Phaseolus vulgaris GN=PHAVU_008G135700g PE=2 SV=1) HSP 1 Score: 89.7 bits (221), Expect = 1.6e-15 Identity = 41/48 (85.42%), Postives = 43/48 (89.58%), Query Frame = 1
BLAST of Csa6G499750 vs. TAIR10
Match: AT4G31700.1 (AT4G31700.1 ribosomal protein S6) HSP 1 Score: 84.0 bits (206), Expect = 4.4e-17 Identity = 38/48 (79.17%), Postives = 41/48 (85.42%), Query Frame = 1
BLAST of Csa6G499750 vs. TAIR10
Match: AT5G10360.1 (AT5G10360.1 Ribosomal protein S6e) HSP 1 Score: 82.8 bits (203), Expect = 9.9e-17 Identity = 37/48 (77.08%), Postives = 41/48 (85.42%), Query Frame = 1
BLAST of Csa6G499750 vs. NCBI nr
Match: gi|700193527|gb|KGN48731.1| (hypothetical protein Csa_6G499750 [Cucumis sativus]) HSP 1 Score: 158.7 bits (400), Expect = 4.0e-36 Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 1
BLAST of Csa6G499750 vs. NCBI nr
Match: gi|778719103|ref|XP_011657963.1| (PREDICTED: LOW QUALITY PROTEIN: 40S ribosomal protein S6-like [Cucumis sativus]) HSP 1 Score: 102.8 bits (255), Expect = 2.6e-19 Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 1
BLAST of Csa6G499750 vs. NCBI nr
Match: gi|595828959|ref|XP_007205780.1| (hypothetical protein PRUPE_ppa010485mg [Prunus persica]) HSP 1 Score: 91.7 bits (226), Expect = 6.0e-16 Identity = 42/48 (87.50%), Postives = 44/48 (91.67%), Query Frame = 1
BLAST of Csa6G499750 vs. NCBI nr
Match: gi|920694478|gb|KOM37703.1| (hypothetical protein LR48_Vigan03g108500 [Vigna angularis]) HSP 1 Score: 91.3 bits (225), Expect = 7.9e-16 Identity = 42/54 (77.78%), Postives = 46/54 (85.19%), Query Frame = 1
BLAST of Csa6G499750 vs. NCBI nr
Match: gi|1009146190|ref|XP_015890747.1| (PREDICTED: 40S ribosomal protein S6 [Ziziphus jujuba]) HSP 1 Score: 90.1 bits (222), Expect = 1.8e-15 Identity = 42/52 (80.77%), Postives = 46/52 (88.46%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
The following gene(s) are orthologous to this gene: The following gene(s) are paralogous to this gene:
The following block(s) are covering this gene: |