Csa6G491040 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa6G491040
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionRNA-binding protein with multiple splicing; contains IPR012677 (Nucleotide-binding, alpha-beta plait)
LocationChr6 : 23560710 .. 23566765 (-)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTCTCTCTCTCGCTCTCTCTCTCTCGCTACTTGGTCAGAGACTCGGAGGTAACAGCACTCCGATGGACGACATGACGAGCTACTATCCGCCACCGCAACCACCGCCGCAGCCTTCTGGTCTTGAACCTCCTCACTATCCCTATTACCAGGTGCCTCCTCCTCCTTCAGCACCCCCGTCTCAGCATTACCTCTCTCAACACCCGTCCACCTTCGCTTCCTATGCCTTACCTCTTTTACCTCACACAACCTCCATCAATGAGGTCCGTACCCTATTCATAGCTGGTCTTCCTGAAGATGTCAAGCCCCGAGAAATTTACAATCTCTTCCGGGAGTTTCCGGGATACGAGTCCTCTCATCTTCGGACCCCCACGCAGACGACCCAGGTCTTCTATTTTGCAAAATCGTTGTTGTTGGTGTTTTGATTTTTTTTTTTTTAATGGATTTTGTCTTTTTCTTCCGAGTGTGAATTGTTTCTGATTTAGGTGCCTGGGTGCCTACACTTTTTAAAATACGCTTAGCTTAAATTCGTGGGCATTCAGTTGCTTTCGTATCAAAGATGGAGATTAATGTTAGGATTGTACAAACAAAAGTCCCACATGAAGTGATTACAAACAAATACTAAATGATCATGGGTATGAAGTGTGGGCAATTGGGTGGTTCCAAAAGCAAAGCTTTGACAGTTTATGCTGCTATATCATACAATTGTAAAGATAGGTGGAGGTTTGGTTGTCCTTATCAATCAAACTCCGGTTCATAGACAATTCTGGCTAGATACCTGAATCTTTCCGAGTTCTGACTTTTGAAGAAGTTGAAGATGATAATGGTTAAACGAAATTAGCTTGGACCTGGTTTTTTGGGGCATTTACCTGAGATTTTTTCTTTTTTTGGCACCCAAATGTTGTTGTGTTAGCAGGACACGAAGTGTGTGCAACTAGTCCCAGCACTCATGGACATAAACGAAGGAATTTATTTCTCAAAACTTAATTCAACATCCCTTGAAACTCGCCCATGCCCACTGTGAGATTGTTAAATGAACTATAGATGTGCTGTGTCAAATTCTAACGGAATGTCATTATGAATATTGGTACCAATACAGCTGCTTATAGCCTAATACCGATGGCAATGTGAAATCTGATGCATAGTAGACTCCTTTGGCCTACTGAGTTTTAGTGGGATGCAAACATTTTATATTAACAAAATTTTACAAAATTGACATATTGCCATATCTATGGATTCTATCTTTGGCCTATATCCGTATTTGTGCTTCTTATGTTCTCGCTAGCTCAACGTAGGGACATTATCAACACGATCAGCGAGTTCTTCCTTCATCTGTTTTATTGTGAGAAGAGTTGTTTTGTTGGCTTTGTGGGGTGTGCTATTTTGTGGGATCTTTTGGGAGAACAAAATAGCAAAGTGTTTAGTGGGTTGGAGAGGGATCCTAGCAATATTTGGTCGTTTGTGTTAGATTTGGTGTTTCTATTTGGGCTTCGATTTTTAAAGATCATCTATACCTATTTACTTGGGGCACCTTTCTTTAGTGGGTTCCCCCTGTATGCCTTTTTGTTCTTTCATTTAGTTTCAATGAAAGTAGTTGTTATTATTAAAAAAAAATGATGTTTCTTTCTTTTGTTGCATTTAATTGGAAGATAGTGGCTTGTAATAGGACGTATGTGTTTTGTTATCAAGACAACAACCTGAAATATTTTTTTGGCAATGCTTAAACATGATTGCATTGTATTTGTGTTTAGTATCTATGTTTAAGGGTTCTCAAGTTAGGCGATGTACTCTTAGGTTCTGGGAATGGTGGAATTAGTCTCTATATTTTGACCAAGTCAAGATGTATGGAGACGAAGCATAAACTGATATGTTAATATCCCATGTTTTCAACTGCAAATGCTATGTTAATCTGTAGTTTCAAATCCAGTTAATATTGAAAATGAAAGCTTGGGAGCTTTATTGGTATTGGTAAAGGCAATATACCAGCTTTTCATATTTTCCAACCTACAATCTATATTTCTGCAATAAATTGTAGTAAATTTGTGCAAATACTATTCAAATATGTGTACTTTGTGCCTATGACTGTCACTTGAACTTTTAAAAGATTGTAATATTCTTTTTGCACTCTCATGTAATATCTTACGTATACAGCTTACCTATCACCGCTTGTGTTACTTTATTGATTAGTGTTATGTACGAATTTTCTTACAATTTTTTTGGTGTGGTTACAGCCATTTGCATTTGCTGTATTCTCAGACCAGCAGTCTGCCGTTGGTGCAATGCATGCTGTAAATGTAAGTGTGCTTGTTCCTTGCTTCTGTATTCCAAGTTCTTTTGTTAAGAAAATCATTTTGATGATCGAAGGAATTAGATAAAAGGAACTTGGAAGAAAGGCATGATGGGGGTGTGGAGTGAAGTAAGAAGAAAAATAAAGAAGAGAGGTTGCGATGAAAAAGTGATGGAAGAACGACAAGAAGAAGACATTACAATTTAGATTTGTAAGAGAGATGCAGATCTATGATAGGAGGTGGAGGGAAGAGGTTACATCAGTGGATGGGCAGCAACTGAGTGGAGAAAGAGGAAGGGGCCGGAGGGGAGGGGAAAGGGAAGGGCCAAAGGGGGTAGGTAGAGGTCGAGAGAGTTTTTTGTTTATCTCTAAATTATTATTATTATTTTCTTCTTATAATTATTTTTATTATGCCACATCATCTCTGCATTGGAGCTGTTAACCTAGGAACTAAATTGAACTATTTCCTAGCTTTGGGACTTGATTGTTTAATTTTAAAACCTAGGAACTAAATTGAGGCAAACCCTAAGCCTCATGGAGTAATTCATCCTTTTTTTTCTTTAGCATTTTTGCTTTCAATTGCTTGGTTGTTCTTTTGATGCTGCTAATAATAATTGTACCAAGGGGTTAGAGAGTTTTTTGGGTTACCTTCTTGGCAGCTTATAAAATTAGAAATTGCAAGGATGGAGATAAAAAGATTTTTACTATGGGTTAATGTATCACATTGGATTATTTAAACAATTGGTTGCTCTTTGTTGTAGGGCATGGTGTTTGATCTTGAGAAGCAGTCAGTGCTGTATGTTGATTTGGCTAAATCTAATTCAAGATCAAAACGGACGAGGACAGGTACATATCTTGATGGCTCTTCTACTACAAACTTATATTTATATTTTATTTAGTCATATAACCAGTTCGGAATATTTTCTTGATGTGTTCATCAAATGGTTAGAGGAGGAAAGATATGGATCAGATAAGAAAGCTAAAGTCTCTATCATTCCAAGGAGTACTCCTGATCCTGGTAAGATGATTTCCTAGCACTTCTTGTGCTTGTAAGCTATTTCTTATACAAGCTCTTTTGAAAAATAATAATAAAATAAAATAAATTCTCTGTTCTCTTGATGCCCCTTAGGGTATCTATTATTATGCTTATTTTTAATGTATAAATCTGCCCCCTCTGATTTATTTGAGGATGATTATGCGCTGTCTGTACAAACTCCTGGGGTAAGGAGTAATTGATTAGTCACGCAGAGGACACATTATTCTAAAAGCTCATTTTGCACATGTTTTGCACGCTTGGGGCACTAGCAGGTCTTGGCAGCACTCACATGTCTGGAATGGGTAATTCTGCTTACAACACGATTGGTTATCCATCTGCACAAAGGTCATCTGCACTACTTAGCACATCTTTATTATTGAAATGGTTAATTACAAGCTTATGTGAAGCTTATACATTATTGTCAAACAGTAATCACTAGTAGAATGTGTCCAAGGGCTTCAGTAAAAGGCTCTTACTATACGCCCTGACTCCTGTGTTAGGTTTTTAACTTTTGTATACTTGCTTTGTTATGTTTCTTCTTCTAAGTTCTAACTAACTAGTACTTTCTATCATCAGCCATGGAAGCTTTGATAACAAAACTGTAAACGATACAGTGGCTGCAAATGTGGTAAGGCTCCTCTATGTTACAATCTACGATTCTTCAGTCCCTATAAGCTGCCATACATCCTCTCTCTGTCCCAAAAGAATTATATGACCAATAATTGAATTGTTTATCCCATTATAAGTAGCAAGTAATTTTTTAACTTAATTATATACCAAATTGGGATAACAATTCGCACCATCAGCTAAAACTATTTTACTTTTCATTTTCTATCCACTTGAAATTGACTGTATTTTCCTTTAAATTTTTATTGTCCAATGACTCTATGGGCTCCATTGTTGTACTGTGGTTTATCTTGATGAAAAGGTATAGAATGGTTTTGAGGGTAGATAGGTTGTGGGAGTGGATATGTCACACTCTAATGCCCTCAAACTGGCTCGTAATTGATAATTTTTAATTGTTTTCTTTTGTATTACCATAGTTTGAGTTCTTTCTTGTAGGTTGCTTTGTATTTCACACTTCTTGTTTGGCCTTTTTGTGGGTTTCTTTTTGTACGTTTAGTGAAAAGTTAATTTTCCCATTTCAAAATAATTATGTAGGCAGGCTTAACTACTAGAACCAGGATTGGGTAAAATTTATTTACCTTGAACTTCTACAATAATATTTGCACTTATTTCTTTGATCTTTTATCATCTCTTTTCGAGAGCTGGGAAATTAGAATTCTGGGAATAAGGCTGCGACCATATTAAATAAAAGAAAAGCTGCAACCATATTAACGCTGGTGTACTTGAAGATTTTCTCATGAACAGAATGTAAAGAATCATAAATTATTGAATGTTGTATGTATTGCAGTACAATTCTGCCATGACATTTTGTATTTATGCATAAATACAGTCACCTATGGTCAAAATTATTTAGTTATGTTTGAAAAACAATTTGTAGCACAATGTATTTGGTGAATCCTGTTAACTTTAGGTGAATTTTTCTTCATGTTCAGATTCCTCAAAATCCCCCATGTCCAACACTTTTTGTGGCAAATCTAGGGCCAGGTTGCACCGAACAAGAGCTTATTCAAATTTTTTTGAGGTTAATAACTTTAGTGTACATTATTTAGGTTATGTTCTGAACATGTAAGAACATGCATCATCTGTTTCTTTGATAATTCCCACCAGATGCCCGGGATTCTTAAAACTAAAAATGCAGAGCACGTATGGAGCCCCAGTTGCTTTTGTTGATTTTCAGGTTAGGAGTGCCCTTCCTCTTCTCAATTATATTTTTCTCTAGCTGATGAATCTTTTTCTACTTAGCATTGAAATTCATAAATCAGACTCCATTCTGCGGTTTTTTTCAATTAGTTATGTGCAGACTATCTGCACTACCCACATCATCACGCTTATAGCTTTGTATTTTTTATTTCCCTGAACATTCACTCAACTTGTTGCTTTTTAGATACTCCCGGGAACTTTTTATTGGTGTAAAAATAATATTGGAAGTTCTATTTTGGTCTGTTGCTTCCATTGTTTCAAGTTCAGGCCATTAATTAAATCTTTCACGTAGTATTTATTTAAAAGGGAGACCAAGTTTTTTCTTTAAATGGAAAAGGTATCTGGGTCTTCCATTGTTATGTTGTGTGAAATGTGGAGTTACAATGTGTGCAGGATACGGCCTGTTCAACTGGAGCTCTGAACCATCTGCAAGGCTCAATTCTATACTCATCACCTCCTGGGGAGGGCATGCGGTTGGAGTATCCTTTTACAAGTTTATTTTTTGAAAAAAGAATTCTTTACAATTGTACTGTTACTACATCGTGCCTTCAAATATTTTGCTTAACCCAACATTTAGATACGCAAAATCAAGAATGGGTATGCGGAAGAAACCGAAATGAATAAAAACAATTCTTGCATTCAGTAAGGACTGGAGCCAACTAAGGAAGAAAATAGAGACCCCTCCCTCAGGCCATGTGCCTACAATGGTTTATGAAGGTCAGAAGTAGTGCATTACTTGTACCCTTATGTAGATGAGGAAATTAACAACATATACCATTCCCATATTTTTTTTTCATTGTATCAAATGCTGCCTTCTCAGTCTTAAACTTCAATTTTTTTTTTAATATCTTCAGAGCCCC

mRNA sequence

ATGGACGACATGACGAGCTACTATCCGCCACCGCAACCACCGCCGCAGCCTTCTGGTCTTGAACCTCCTCACTATCCCTATTACCAGGTGCCTCCTCCTCCTTCAGCACCCCCGTCTCAGCATTACCTCTCTCAACACCCGTCCACCTTCGCTTCCTATGCCTTACCTCTTTTACCTCACACAACCTCCATCAATGAGGTCCGTACCCTATTCATAGCTGGTCTTCCTGAAGATGTCAAGCCCCGAGAAATTTACAATCTCTTCCGGGAGTTTCCGGGATACGAGTCCTCTCATCTTCGGACCCCCACGCAGACGACCCAGCCATTTGCATTTGCTGTATTCTCAGACCAGCAGTCTGCCGTTGGTGCAATGCATGCTGTAAATGGCATGGTGTTTGATCTTGAGAAGCAGTCAGTGCTGTATGTTGATTTGGCTAAATCTAATTCAAGATCAAAACGGACGAGGACAGAGGAGGAAAGATATGGATCAGATAAGAAAGCTAAAGTCTCTATCATTCCAAGGAGTACTCCTGATCCTGGTCTTGGCAGCACTCACATGTCTGGAATGGGTAATTCTGCTTACAACACGATTGGTTATCCATCTGCACAAAGCCATGGAAGCTTTGATAACAAAACTGTAAACGATACAGTGGCTGCAAATGTGATTCCTCAAAATCCCCCATGTCCAACACTTTTTGTGGCAAATCTAGGGCCAGGTTGCACCGAACAAGAGCTTATTCAAATTTTTTTGAGATGCCCGGGATTCTTAAAACTAAAAATGCAGAGCACGTATGGAGCCCCAGTTGCTTTTGTTGATTTTCAGGATACGGCCTGTTCAACTGGAGCTCTGAACCATCTGCAAGGCTCAATTCTATACTCATCACCTCCTGGGGAGGGCATGCGGTTGGAATACGCAAAATCAAGAATGGGTATGCGGAAGAAACCGAAATGA

Coding sequence (CDS)

ATGGACGACATGACGAGCTACTATCCGCCACCGCAACCACCGCCGCAGCCTTCTGGTCTTGAACCTCCTCACTATCCCTATTACCAGGTGCCTCCTCCTCCTTCAGCACCCCCGTCTCAGCATTACCTCTCTCAACACCCGTCCACCTTCGCTTCCTATGCCTTACCTCTTTTACCTCACACAACCTCCATCAATGAGGTCCGTACCCTATTCATAGCTGGTCTTCCTGAAGATGTCAAGCCCCGAGAAATTTACAATCTCTTCCGGGAGTTTCCGGGATACGAGTCCTCTCATCTTCGGACCCCCACGCAGACGACCCAGCCATTTGCATTTGCTGTATTCTCAGACCAGCAGTCTGCCGTTGGTGCAATGCATGCTGTAAATGGCATGGTGTTTGATCTTGAGAAGCAGTCAGTGCTGTATGTTGATTTGGCTAAATCTAATTCAAGATCAAAACGGACGAGGACAGAGGAGGAAAGATATGGATCAGATAAGAAAGCTAAAGTCTCTATCATTCCAAGGAGTACTCCTGATCCTGGTCTTGGCAGCACTCACATGTCTGGAATGGGTAATTCTGCTTACAACACGATTGGTTATCCATCTGCACAAAGCCATGGAAGCTTTGATAACAAAACTGTAAACGATACAGTGGCTGCAAATGTGATTCCTCAAAATCCCCCATGTCCAACACTTTTTGTGGCAAATCTAGGGCCAGGTTGCACCGAACAAGAGCTTATTCAAATTTTTTTGAGATGCCCGGGATTCTTAAAACTAAAAATGCAGAGCACGTATGGAGCCCCAGTTGCTTTTGTTGATTTTCAGGATACGGCCTGTTCAACTGGAGCTCTGAACCATCTGCAAGGCTCAATTCTATACTCATCACCTCCTGGGGAGGGCATGCGGTTGGAATACGCAAAATCAAGAATGGGTATGCGGAAGAAACCGAAATGA

Protein sequence

MDDMTSYYPPPQPPPQPSGLEPPHYPYYQVPPPPSAPPSQHYLSQHPSTFASYALPLLPHTTSINEVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLRTPTQTTQPFAFAVFSDQQSAVGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTRTEEERYGSDKKAKVSIIPRSTPDPGLGSTHMSGMGNSAYNTIGYPSAQSHGSFDNKTVNDTVAANVIPQNPPCPTLFVANLGPGCTEQELIQIFLRCPGFLKLKMQSTYGAPVAFVDFQDTACSTGALNHLQGSILYSSPPGEGMRLEYAKSRMGMRKKPK*
Homology
[Close]
BLAST of Csa6G491040 vs. Swiss-Prot
Match: RBPS2_MOUSE (RNA-binding protein with multiple splicing 2 OS=Mus musculus GN=Rbpms2 PE=1 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.3e-14
Identity = 39/90 (43.33%), Postives = 58/90 (64.44%), Query Frame = 1 

Query: 66  EVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLRTPTQTTQPFAFAVFSDQQSAVGAMH 125
           EVRTLF++GLP D+KPRE+Y LFR F GYE S ++  ++  QP  F +F  +  A  A +
Sbjct: 23  EVRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTSR--QPVGFVIFDSRAGAEAAKN 82

Query: 126 AVNGMVFDLEKQSVLYVDLAKSNSRSKRTR 156
           A+NG+ FD E    L ++ AK+N++  +++
Sbjct: 83  ALNGIRFDPENPQTLRLEFAKANTKMAKSK 110

[Close]
BLAST of Csa6G491040 vs. Swiss-Prot
Match: RBPS2_HUMAN (RNA-binding protein with multiple splicing 2 OS=Homo sapiens GN=RBPMS2 PE=1 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.7e-14
Identity = 39/90 (43.33%), Postives = 57/90 (63.33%), Query Frame = 1 

Query: 66  EVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLRTPTQTTQPFAFAVFSDQQSAVGAMH 125
           EVRTLF++GLP D+KPRE+Y LFR F GYE S ++   +  QP  F +F  +  A  A +
Sbjct: 29  EVRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTAR--QPVGFVIFDSRAGAEAAKN 88

Query: 126 AVNGMVFDLEKQSVLYVDLAKSNSRSKRTR 156
           A+NG+ FD E    L ++ AK+N++  +++
Sbjct: 89  ALNGIRFDPENPQTLRLEFAKANTKMAKSK 116

[Close]
BLAST of Csa6G491040 vs. Swiss-Prot
Match: RBPMS_CHICK (RNA-binding protein with multiple splicing OS=Gallus gallus GN=RBPMS PE=2 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 2.8e-14
Identity = 39/90 (43.33%), Postives = 57/90 (63.33%), Query Frame = 1 

Query: 66  EVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLRTPTQTTQPFAFAVFSDQQSAVGAMH 125
           EVRTLF++GLP D+KPRE+Y LFR F GYE S ++  ++  QP  F  F  +  A  A +
Sbjct: 20  EVRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTSK--QPVGFVTFDSRAGAEAAKN 79

Query: 126 AVNGMVFDLEKQSVLYVDLAKSNSRSKRTR 156
           A+NG+ FD E    L ++ AK+N++  +++
Sbjct: 80  ALNGIRFDPENPQTLRLEFAKANTKMAKSK 107

[Close]
BLAST of Csa6G491040 vs. Swiss-Prot
Match: RBPMS_XENLA (RNA-binding protein with multiple splicing OS=Xenopus laevis GN=rbpms PE=2 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 3.7e-14
Identity = 39/90 (43.33%), Postives = 57/90 (63.33%), Query Frame = 1 

Query: 66  EVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLRTPTQTTQPFAFAVFSDQQSAVGAMH 125
           EVRTLF++GLP D+KPRE+Y LFR F GYE S ++  ++  QP  F  F ++  A  A +
Sbjct: 18  EVRTLFVSGLPIDIKPRELYLLFRPFKGYEGSLIKLTSK--QPVGFVTFDNRAGAEAAKN 77

Query: 126 AVNGMVFDLEKQSVLYVDLAKSNSRSKRTR 156
           A+NG+ FD E    L ++ AK+N++  + +
Sbjct: 78  ALNGIRFDPENPQTLRLEFAKANTKMAKNK 105

[Close]
BLAST of Csa6G491040 vs. Swiss-Prot
Match: RBPMS_HUMAN (RNA-binding protein with multiple splicing OS=Homo sapiens GN=RBPMS PE=1 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.4e-13
Identity = 39/90 (43.33%), Postives = 56/90 (62.22%), Query Frame = 1 

Query: 66  EVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLRTPTQTTQPFAFAVFSDQQSAVGAMH 125
           EVRTLF++GLP D+KPRE+Y LFR F GYE S ++  ++  QP  F  F  +  A  A +
Sbjct: 22  EVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSK--QPVGFVSFDSRSEAEAAKN 81

Query: 126 AVNGMVFDLEKQSVLYVDLAKSNSRSKRTR 156
           A+NG+ FD E    L ++ AK+N++  + +
Sbjct: 82  ALNGIRFDPEIPQTLRLEFAKANTKMAKNK 109

[Close]
BLAST of Csa6G491040 vs. TrEMBL
Match: A0A0A0KLD8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G491040 PE=4 SV=1)

HSP 1 Score: 656.8 bits (1693), Expect = 1.4e-185
Identity = 317/317 (100.00%), Postives = 317/317 (100.00%), Query Frame = 1 

Query: 1   MDDMTSYYPPPQPPPQPSGLEPPHYPYYQVPPPPSAPPSQHYLSQHPSTFASYALPLLPH 60
           MDDMTSYYPPPQPPPQPSGLEPPHYPYYQVPPPPSAPPSQHYLSQHPSTFASYALPLLPH
Sbjct: 1   MDDMTSYYPPPQPPPQPSGLEPPHYPYYQVPPPPSAPPSQHYLSQHPSTFASYALPLLPH 60

Query: 61  TTSINEVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLRTPTQTTQPFAFAVFSDQQSA 120
           TTSINEVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLRTPTQTTQPFAFAVFSDQQSA
Sbjct: 61  TTSINEVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLRTPTQTTQPFAFAVFSDQQSA 120

Query: 121 VGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTRTEEERYGSDKKAKVSIIPRSTPDPA 180
           VGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTRTEEERYGSDKKAKVSIIPRSTPDPA
Sbjct: 121 VGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTRTEEERYGSDKKAKVSIIPRSTPDPA 180

Query: 181 GLGSTHMSGMGNSAYNTIGYPSAQSHGSFDNKTVNDTVAANVIPQNPPCPTLFVANLGPG 240
           GLGSTHMSGMGNSAYNTIGYPSAQSHGSFDNKTVNDTVAANVIPQNPPCPTLFVANLGPG
Sbjct: 181 GLGSTHMSGMGNSAYNTIGYPSAQSHGSFDNKTVNDTVAANVIPQNPPCPTLFVANLGPG 240

Query: 241 CTEQELIQIFLRCPGFLKLKMQSTYGAPVAFVDFQDTACSTGALNHLQGSILYSSPPGEG 300
           CTEQELIQIFLRCPGFLKLKMQSTYGAPVAFVDFQDTACSTGALNHLQGSILYSSPPGEG
Sbjct: 241 CTEQELIQIFLRCPGFLKLKMQSTYGAPVAFVDFQDTACSTGALNHLQGSILYSSPPGEG 300

Query: 301 MRLEYAKSRMGMRKKPK 318
           MRLEYAKSRMGMRKKPK
Sbjct: 301 MRLEYAKSRMGMRKKPK 317

[Close]
BLAST of Csa6G491040 vs. TrEMBL
Match: M5WFL2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa027064mg PE=4 SV=1)

HSP 1 Score: 472.6 bits (1215), Expect = 3.7e-130
Identity = 241/335 (71.94%), Postives = 267/335 (79.70%), Query Frame = 1 

Query: 1   MDDMTSYYPPPQPPPQPSGLEPPHYPYYQVPPPPSAPPS----------QHYLSQHPSTF 60
           MDDM +YYPPP PPP        HYPYYQ PPPP  PPS          Q Y  QHP  F
Sbjct: 1   MDDMAAYYPPPPPPPGSV-----HYPYYQQPPPPQPPPSVAPPLQHHLVQPYFPQHPPPF 60

Query: 61  ASYALPLLPHTTSINEVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLRTPTQTTQPFA 120
           +SYA  L+P   S +EVRTLF+AGLPEDVKPREIYNLFREFPGYESSHLRTPT+ +QPFA
Sbjct: 61  SSYAPALVPQP-SHDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRTPTEKSQPFA 120

Query: 121 FAVFSDQQSAVGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTRTEEERYGSDKKAKVS 180
           FAVF DQQSA+GAMHA+NGMVFDLEK S LY+DLAKSNSRSKR+RT++ER GSDKKA+ S
Sbjct: 121 FAVFLDQQSAIGAMHALNGMVFDLEKGSTLYIDLAKSNSRSKRSRTDDERSGSDKKARGS 180

Query: 181 IIPRSTPDPAGLGSTHMSGMGNSAYNTIGYPSAQSHGSFDNKTVNDTVAANV-------I 240
              R  PD +G+GS HM GMGNSAYN IGYPSA SHG+F+   V++T+A NV        
Sbjct: 181 SYSRGAPD-SGVGSIHMPGMGNSAYNIIGYPSAPSHGNFNGIPVHETIAGNVNNSAAQHF 240

Query: 241 PQ-NPPCPTLFVANLGPGCTEQELIQIFLRCPGFLKLKMQSTYGAPVAFVDFQDTACSTG 300
           PQ N PCPT+FVANLGP CTEQELIQ+F RCPGF+KLKMQSTYGAPVAFVDFQDTACSTG
Sbjct: 241 PQNNTPCPTIFVANLGPTCTEQELIQVFSRCPGFIKLKMQSTYGAPVAFVDFQDTACSTG 300

Query: 301 ALNHLQGSILYSSPPGEGMRLEYAKSRMGMRKKPK 318
           AL+HLQG+ILYSS  GEGMRLEYAKSRMGMRKKPK
Sbjct: 301 ALSHLQGTILYSSTTGEGMRLEYAKSRMGMRKKPK 328

[Close]
BLAST of Csa6G491040 vs. TrEMBL
Match: D7SVT4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0031g00180 PE=4 SV=1)

HSP 1 Score: 439.1 bits (1128), Expect = 4.5e-120
Identity = 231/335 (68.96%), Postives = 257/335 (76.72%), Query Frame = 1 

Query: 4   MTSYYPPPQ--PPP-------QPSGLEPPHYPYYQVPPPPSAPPSQH--YLSQH---PST 63
           M +YYPPP   PPP        P  L PP  P  QV PPP  PP Q   +L  H   P  
Sbjct: 1   MAAYYPPPSAHPPPPFPYYQPHPPPLGPPAPPPQQVAPPPPPPPPQQQPFLFPHQPPPPP 60

Query: 64  FASYALPLLPHTTSINEVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLRTPTQTTQPF 123
           FASYA PL P T S++EVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLR+P+Q +QPF
Sbjct: 61  FASYAPPLYPQT-SVDEVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLRSPSQNSQPF 120

Query: 124 AFAVFSDQQSAVGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTRTEEERYGSDKKAKV 183
           AFAVF DQQSA+ AMHA+NGMVFDLEK S LY+DLAKSNSRSKR+R ++ER G DKK K 
Sbjct: 121 AFAVFLDQQSAIAAMHALNGMVFDLEKGSTLYIDLAKSNSRSKRSRADDERPGLDKKVKG 180

Query: 184 SIIPRSTPDPAGLGSTHMSGMGNSAYNTIGYPSAQSHGSFDNKTVNDTVA------ANVI 243
           S    S P  +G+GS HM GMGNSAY+ IGYPS QSHG+FD + +N+T A      A   
Sbjct: 181 S-AGFSRPPDSGVGSVHMPGMGNSAYSMIGYPSTQSHGNFDGRALNETPAKLNNSSAPYF 240

Query: 244 PQN-PPCPTLFVANLGPGCTEQELIQIFLRCPGFLKLKMQSTYGAPVAFVDFQDTACSTG 303
           PQN  PCPTLFVANLGP C+EQELI IF RCPGFLKLKMQSTYG PVAFVDFQDT CSTG
Sbjct: 241 PQNATPCPTLFVANLGPTCSEQELIDIFSRCPGFLKLKMQSTYGTPVAFVDFQDTPCSTG 300

Query: 304 ALNHLQGSILYSSPPGEGMRLEYAKSRMGMRKKPK 318
           ALNHLQG++LYSSP GEGMR+EYAKSRMG+R+KPK
Sbjct: 301 ALNHLQGTVLYSSPAGEGMRIEYAKSRMGLRRKPK 333

[Close]
BLAST of Csa6G491040 vs. TrEMBL
Match: A0A067KAD2_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12434 PE=4 SV=1)

HSP 1 Score: 426.4 bits (1095), Expect = 3.0e-116
Identity = 217/322 (67.39%), Postives = 246/322 (76.40%), Query Frame = 1 

Query: 6   SYYPPPQPPPQPSGLEPPHYP-YYQVPPPPSAPP------SQHYL--SQHPSTFASYALP 65
           +YYPPP PPP P    P HYP YYQ PPPP+APP         Y+  +Q P  F SY   
Sbjct: 4   AYYPPPPPPPPPP--PPGHYPTYYQHPPPPAAPPVVLPPPPPPYIPQAQPPPPFTSYPPS 63

Query: 66  LLPHTTSINEVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLRTPTQTTQPFAFAVFSD 125
             PH    + VRTLF+AGLP+DVKPREIYNLFREFPGYESSHLR+PTQT+QPFAFA F D
Sbjct: 64  YAPHAPH-DPVRTLFVAGLPDDVKPREIYNLFREFPGYESSHLRSPTQTSQPFAFATFID 123

Query: 126 QQSAVGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTRTEEERYGSDKKAKVSIIPRST 185
           Q SAV AMHA+NGMVFDLEK S LY+DLAKSNSRSKR+R+++E  G DK+ K S      
Sbjct: 124 QPSAVAAMHALNGMVFDLEKGSTLYIDLAKSNSRSKRSRSDDEWSGLDKRVKASPATPGG 183

Query: 186 PDPAGLGSTHMSGMGNSAYNTIGYPSAQSHGSFDNKTVNDTVAANVIPQN-PPCPTLFVA 245
              +G GS H+ GM NSAYN IGY S QSHG FD++  ++   AN    + PPCPTLFVA
Sbjct: 184 SLDSGFGSVHLPGMSNSAYNMIGYTSPQSHGIFDSRAASEPTGANSSNSSAPPCPTLFVA 243

Query: 246 NLGPGCTEQELIQIFLRCPGFLKLKMQSTYGAPVAFVDFQDTACSTGALNHLQGSILYSS 305
           NLGP C EQELIQ+F RCPGFLKLKMQSTYGAPVAFVDFQDT+CSTGALNHLQG+ILYSS
Sbjct: 244 NLGPNCMEQELIQVFSRCPGFLKLKMQSTYGAPVAFVDFQDTSCSTGALNHLQGTILYSS 303

Query: 306 PPGEGMRLEYAKSRMGMRKKPK 318
           P G+GMRLEYAKSRMGMR+KP+
Sbjct: 304 PAGDGMRLEYAKSRMGMRRKPR 322

[Close]
BLAST of Csa6G491040 vs. TrEMBL
Match: A0A059B155_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H02095 PE=4 SV=1)

HSP 1 Score: 422.2 bits (1084), Expect = 5.7e-115
Identity = 222/330 (67.27%), Postives = 255/330 (77.27%), Query Frame = 1 

Query: 1   MDDMTSYYPPPQPPPQPSGLEPPHYPYYQVPPPP----------SAPPSQHYLSQ-HPST 60
           MDDM +YYPPP     P  L  P Y YYQ PPPP          + PP+Q YL   H S 
Sbjct: 1   MDDMAAYYPPP-----PGTL--PAYAYYQAPPPPQPPAAAAAAAAGPPTQPYLPHLHQSP 60

Query: 61  FASYALPLLPHTTSINEVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLRTPTQTTQPF 120
           F SY  P++PH  + +EVRTLF+AGLPEDVK REIYNLFREFPGYESSHLR+P++ +QPF
Sbjct: 61  FPSYGAPVVPHG-AYDEVRTLFVAGLPEDVKAREIYNLFREFPGYESSHLRSPSKNSQPF 120

Query: 121 AFAVFSDQQSAVGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTRTEEERYGSDKKAKV 180
           AFAVFSDQQSAV AMHA+NGMVFDLEK S LY+DLAKSNSRSKR R +++R+GSDK+AK+
Sbjct: 121 AFAVFSDQQSAVAAMHALNGMVFDLEKGSTLYIDLAKSNSRSKRLR-DDDRHGSDKRAKL 180

Query: 181 SI-IPRSTPDPAGLGSTHMSGMGNSAYNTIGYPSAQSHGSFDNKTVNDTVAANVIPQN-P 240
           S        D AG+GS HM GMGNSAY+TIGYPS QSHGS D++ +    AA       P
Sbjct: 181 SSPFSFGALDSAGVGSPHMPGMGNSAYSTIGYPSTQSHGSSDSRGMKGMTAAKTGNSTAP 240

Query: 241 PCPTLFVANLGPGCTEQELIQIFLRCPGFLKLKMQSTYGAPVAFVDFQDTACSTGALNHL 300
           PCPTLFVANLGP CTEQELIQ+F RC GFLKLKMQSTYGAPVAFVDFQDTACST ALN L
Sbjct: 241 PCPTLFVANLGPRCTEQELIQVFSRCSGFLKLKMQSTYGAPVAFVDFQDTACSTEALNQL 300

Query: 301 QGSILYSSPPGEGMRLEYAKSRMGMRKKPK 318
           QG++L+SSP G+G+RLE+AKSRMGMR+K K
Sbjct: 301 QGTLLHSSPAGDGIRLEFAKSRMGMRRKGK 321

[Close]
BLAST of Csa6G491040 vs. TAIR10
Match: AT2G42240.2 (AT2G42240.2 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 291.2 bits (744), Expect = 7.7e-79
Identity = 167/309 (54.05%), Postives = 196/309 (63.43%), Query Frame = 1 

Query: 1   MDDMTSYYP----PPQPPPQPSGLEPPHYPYYQVPPPPSAPPSQHYLSQHPSTFASYALP 60
           MDD+ +YY     P   PP P G          V P P       YL  H S  A     
Sbjct: 1   MDDLEAYYSHYNLPAMVPPPPPG----------VSPIPITSAHSVYLPTHVSIGAR---- 60

Query: 61  LLPHTTSINEVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLRTPTQTTQPFAFAVFSD 120
                   +EVRTLF+AGLPEDVKPREIYNLFREFPGYE+SHLR+ +   +PFAFAVFSD
Sbjct: 61  --------DEVRTLFVAGLPEDVKPREIYNLFREFPGYETSHLRS-SDGAKPFAFAVFSD 120

Query: 121 QQSAVGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTRTEEERYGSDKKAKVSIIPRST 180
            QSAV  MHA+NGMVFDLEK S L++DLAKSN +SKR+RT++  + S KK K      +T
Sbjct: 121 LQSAVAVMHALNGMVFDLEKHSTLHIDLAKSNPKSKRSRTDDG-WESLKKLK----SWNT 180

Query: 181 PDPAGLGSTHMSGMGNSAYNTIGYPSAQSHGSFDNKTVNDTVAANVIPQNPPCPTLFVAN 240
              +G GS    GM +SAYNTIGY  AQS G   N       +        PCPTLF+AN
Sbjct: 181 TTESGFGSFQTPGMSSSAYNTIGYSPAQSQG-IANVAGRAPTSRKPSKAADPCPTLFIAN 240

Query: 241 LGPGCTEQELIQIFLRCPGFLKLKMQSTYGAPVAFVDFQDTACSTGALNHLQGSILYSSP 300
           +GP CTE ELIQ+F RC GFLKLK+Q TYG PVAFVDFQD +CS+ AL+ LQG++LYSS 
Sbjct: 241 MGPNCTEAELIQVFSRCRGFLKLKIQGTYGTPVAFVDFQDVSCSSEALHTLQGTVLYSSL 280

Query: 301 PGEGMRLEY 306
            GE +RL+Y
Sbjct: 301 TGEVLRLQY 280

[Close]
BLAST of Csa6G491040 vs. TAIR10
Match: AT3G21215.1 (AT3G21215.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 146.4 bits (368), Expect = 3.1e-35
Identity = 106/333 (31.83%), Postives = 152/333 (45.65%), Query Frame = 1 

Query: 8   YPPPQPPPQPSGLE---PPHYP-YYQVPPPPSAPPSQHYLSQHPSTFASYALPLLPHTTS 67
           +PP   PP P+ +    PPH P  +  PPPP      H                  +   
Sbjct: 13  WPPAGAPPPPAAVSSAAPPHPPPIHHHPPPPPVLVDNH------------------NRPP 72

Query: 68  INEVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLRTPTQTTQPFAFAVFSDQQSAVGA 127
            +E+RT+FIAGLP+DVK RE+ NL R  PGYE+S +    +  +P  FA+FS  Q A+ A
Sbjct: 73  YDELRTIFIAGLPDDVKERELLNLLRWLPGYEASQVNFKGE--KPMGFALFSTAQFAMAA 132

Query: 128 MHAVNGMVFDLEKQSVLYVDLAKSNSRSKR---------TRTEEERYGSDKKAKV-SIIP 187
              +  MVFD E +SV++ ++AK N   KR          +++  R G D    V S  P
Sbjct: 133 KDTLQHMVFDAESKSVIHTEMAKKNLFVKRGIVGDSNAYDQSKRLRTGGDCTHSVYSPSP 192

Query: 188 RSTPDPAGLGSTHMSGMGNSAYNTIGYPSAQSHGSFDNKTV-----------NDTVAANV 247
              P P   G  H        Y     P    +  +    V           +  V    
Sbjct: 193 FHPPPPPVWGPPH-------GYMAPAPPPYDPYAGYHAPPVPMPTPPPIAAPSSYVPVQN 252

Query: 248 IPQNPPCPTLFVANLGPGCTEQELIQIFLRCPGFLKLKMQSTYGAPVAFVDFQDTACSTG 307
           I  NPPC TLF+ NLG    E+EL  +    PGF ++K+       V F++F+D   +T 
Sbjct: 253 IKDNPPCNTLFIGNLGENINEEELRSLLSAQPGFKQMKILRQERHTVCFIEFEDVNSATN 312

Query: 308 ALNHLQGSILYSSPPGEGMRLEYAKSRMGMRKK 316
             ++LQG+++ SS    GMR++Y+K+  G RK+
Sbjct: 313 VHHNLQGAVIPSS-GSIGMRIQYSKNPYGKRKE 317

[Close]
BLAST of Csa6G491040 vs. TAIR10
Match: AT3G13700.1 (AT3G13700.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 137.9 bits (346), Expect = 1.1e-32
Identity = 100/308 (32.47%), Postives = 141/308 (45.78%), Query Frame = 1 

Query: 23  PHYPYYQVPPPPSAPPSQHYLSQHPSTFASYALPLLPHTTSINEVRTLFIAGLPEDVKPR 82
           P Y Y     P   PP    L+  P                   + TLF++GLP DVK R
Sbjct: 9   PFYVYQLHSHPHHLPPQLPLLADEPGA-----------------INTLFVSGLPNDVKAR 68

Query: 83  EIYNLFREFPGYESSHLR------------------TPTQTTQPFAFAVFSDQQSAVGAM 142
           EI+NLFR   G+ES  L+                   P       AFA F+  + A+ AM
Sbjct: 69  EIHNLFRRRHGFESCQLKYTGRGDQVCKNLQFLFFFIPIFRKAVVAFATFTSHRFALAAM 128

Query: 143 HAVNGMVFDLEKQSVLYVDLAKSNSRSKRTRTEEERYGSDKKAKVSIIPRSTPDPAGLGS 202
           + +NG+ FD +  S L+++LA+SNSR K           D + K   I +S  D +  G 
Sbjct: 129 NELNGVKFDPQTGSNLHIELARSNSRRKERPGSGPYVVIDNRNKE--ISKSQDDQSDEGD 188

Query: 203 THMSGMGNSAYNTIGYPSAQSHGSFDNKTVNDTVAANVIPQNPP--------CPTLFVAN 262
           +    +     +     +  +    D++  +   +AN   +           C TLF+AN
Sbjct: 189 SDPDEVQEPGNSDSPKENDTTKSEADSEPDSKAPSANGHLEKASEGGSGARACSTLFIAN 248

Query: 263 LGPGCTEQELIQIFLRCPGFLKLKMQSTYGAPVAFVDFQDTACSTGALNHLQGSILYSSP 305
           LGP CTE EL Q+  R PGF  LK+++  G PVAF DF++   +T A+NHLQG++L SS 
Sbjct: 249 LGPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQGNLLSSSD 296

[Close]
BLAST of Csa6G491040 vs. NCBI nr
Match: gi|778718464|ref|XP_011657875.1| (PREDICTED: U1 small nuclear ribonucleoprotein A isoform X1 [Cucumis sativus])

HSP 1 Score: 656.8 bits (1693), Expect = 2.0e-185
Identity = 317/317 (100.00%), Postives = 317/317 (100.00%), Query Frame = 1 

Query: 1   MDDMTSYYPPPQPPPQPSGLEPPHYPYYQVPPPPSAPPSQHYLSQHPSTFASYALPLLPH 60
           MDDMTSYYPPPQPPPQPSGLEPPHYPYYQVPPPPSAPPSQHYLSQHPSTFASYALPLLPH
Sbjct: 1   MDDMTSYYPPPQPPPQPSGLEPPHYPYYQVPPPPSAPPSQHYLSQHPSTFASYALPLLPH 60

Query: 61  TTSINEVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLRTPTQTTQPFAFAVFSDQQSA 120
           TTSINEVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLRTPTQTTQPFAFAVFSDQQSA
Sbjct: 61  TTSINEVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLRTPTQTTQPFAFAVFSDQQSA 120

Query: 121 VGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTRTEEERYGSDKKAKVSIIPRSTPDPA 180
           VGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTRTEEERYGSDKKAKVSIIPRSTPDPA
Sbjct: 121 VGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTRTEEERYGSDKKAKVSIIPRSTPDPA 180

Query: 181 GLGSTHMSGMGNSAYNTIGYPSAQSHGSFDNKTVNDTVAANVIPQNPPCPTLFVANLGPG 240
           GLGSTHMSGMGNSAYNTIGYPSAQSHGSFDNKTVNDTVAANVIPQNPPCPTLFVANLGPG
Sbjct: 181 GLGSTHMSGMGNSAYNTIGYPSAQSHGSFDNKTVNDTVAANVIPQNPPCPTLFVANLGPG 240

Query: 241 CTEQELIQIFLRCPGFLKLKMQSTYGAPVAFVDFQDTACSTGALNHLQGSILYSSPPGEG 300
           CTEQELIQIFLRCPGFLKLKMQSTYGAPVAFVDFQDTACSTGALNHLQGSILYSSPPGEG
Sbjct: 241 CTEQELIQIFLRCPGFLKLKMQSTYGAPVAFVDFQDTACSTGALNHLQGSILYSSPPGEG 300

Query: 301 MRLEYAKSRMGMRKKPK 318
           MRLEYAKSRMGMRKKPK
Sbjct: 301 MRLEYAKSRMGMRKKPK 317

[Close]
BLAST of Csa6G491040 vs. NCBI nr
Match: gi|778718468|ref|XP_011657876.1| (PREDICTED: U1 small nuclear ribonucleoprotein A isoform X2 [Cucumis sativus])

HSP 1 Score: 650.6 bits (1677), Expect = 1.4e-183
Identity = 316/317 (99.68%), Postives = 316/317 (99.68%), Query Frame = 1 

Query: 1   MDDMTSYYPPPQPPPQPSGLEPPHYPYYQVPPPPSAPPSQHYLSQHPSTFASYALPLLPH 60
           MDDMTSYYPPPQPPPQPSGLEPPHYPYYQVPPPPSAPPSQHYLSQHPSTFASYALPLLPH
Sbjct: 1   MDDMTSYYPPPQPPPQPSGLEPPHYPYYQVPPPPSAPPSQHYLSQHPSTFASYALPLLPH 60

Query: 61  TTSINEVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLRTPTQTTQPFAFAVFSDQQSA 120
           TTSINEVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLRTPTQTTQPFAFAVFSDQQSA
Sbjct: 61  TTSINEVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLRTPTQTTQPFAFAVFSDQQSA 120

Query: 121 VGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTRTEEERYGSDKKAKVSIIPRSTPDPA 180
           VGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTRTEEERYGSDKKAKVSIIPRSTPDP 
Sbjct: 121 VGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTRTEEERYGSDKKAKVSIIPRSTPDP- 180

Query: 181 GLGSTHMSGMGNSAYNTIGYPSAQSHGSFDNKTVNDTVAANVIPQNPPCPTLFVANLGPG 240
           GLGSTHMSGMGNSAYNTIGYPSAQSHGSFDNKTVNDTVAANVIPQNPPCPTLFVANLGPG
Sbjct: 181 GLGSTHMSGMGNSAYNTIGYPSAQSHGSFDNKTVNDTVAANVIPQNPPCPTLFVANLGPG 240

Query: 241 CTEQELIQIFLRCPGFLKLKMQSTYGAPVAFVDFQDTACSTGALNHLQGSILYSSPPGEG 300
           CTEQELIQIFLRCPGFLKLKMQSTYGAPVAFVDFQDTACSTGALNHLQGSILYSSPPGEG
Sbjct: 241 CTEQELIQIFLRCPGFLKLKMQSTYGAPVAFVDFQDTACSTGALNHLQGSILYSSPPGEG 300

Query: 301 MRLEYAKSRMGMRKKPK 318
           MRLEYAKSRMGMRKKPK
Sbjct: 301 MRLEYAKSRMGMRKKPK 316

[Close]
BLAST of Csa6G491040 vs. NCBI nr
Match: gi|659079532|ref|XP_008440306.1| (PREDICTED: protein WHI4 [Cucumis melo])

HSP 1 Score: 639.8 bits (1649), Expect = 2.5e-180
Identity = 311/317 (98.11%), Postives = 312/317 (98.42%), Query Frame = 1 

Query: 1   MDDMTSYYPPPQPPPQPSGLEPPHYPYYQVPPPPSAPPSQHYLSQHPSTFASYALPLLPH 60
           MDDMTSYYPPPQPPPQPSGLEP HYPYYQVPPPPSAPPSQHYLSQHP TFASY LPLLPH
Sbjct: 1   MDDMTSYYPPPQPPPQPSGLEPSHYPYYQVPPPPSAPPSQHYLSQHPPTFASYGLPLLPH 60

Query: 61  TTSINEVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLRTPTQTTQPFAFAVFSDQQSA 120
           TTSINEVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLRTPTQTTQPFAFAVFSDQQSA
Sbjct: 61  TTSINEVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLRTPTQTTQPFAFAVFSDQQSA 120

Query: 121 VGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTRTEEERYGSDKKAKVSIIPRSTPDPA 180
           VGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTRTE+ERYGSDKKAKVSII RSTPDP 
Sbjct: 121 VGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTRTEDERYGSDKKAKVSIISRSTPDP- 180

Query: 181 GLGSTHMSGMGNSAYNTIGYPSAQSHGSFDNKTVNDTVAANVIPQNPPCPTLFVANLGPG 240
           GLGSTHMSGMGNSAYNTIGYPSAQSHGSFDNKTVNDTVAANVIPQNPPCPTLFVANLGPG
Sbjct: 181 GLGSTHMSGMGNSAYNTIGYPSAQSHGSFDNKTVNDTVAANVIPQNPPCPTLFVANLGPG 240

Query: 241 CTEQELIQIFLRCPGFLKLKMQSTYGAPVAFVDFQDTACSTGALNHLQGSILYSSPPGEG 300
           CTEQELIQIFLRCPGFLKLKMQSTYGAPVAFVDFQDTACSTGALNHLQGSILYSSPPGEG
Sbjct: 241 CTEQELIQIFLRCPGFLKLKMQSTYGAPVAFVDFQDTACSTGALNHLQGSILYSSPPGEG 300

Query: 301 MRLEYAKSRMGMRKKPK 318
           MRLEYAKSRMGMRKKPK
Sbjct: 301 MRLEYAKSRMGMRKKPK 316

[Close]
BLAST of Csa6G491040 vs. NCBI nr
Match: gi|595834311|ref|XP_007206844.1| (hypothetical protein PRUPE_ppa027064mg [Prunus persica])

HSP 1 Score: 472.6 bits (1215), Expect = 5.3e-130
Identity = 241/335 (71.94%), Postives = 267/335 (79.70%), Query Frame = 1 

Query: 1   MDDMTSYYPPPQPPPQPSGLEPPHYPYYQVPPPPSAPPS----------QHYLSQHPSTF 60
           MDDM +YYPPP PPP        HYPYYQ PPPP  PPS          Q Y  QHP  F
Sbjct: 1   MDDMAAYYPPPPPPPGSV-----HYPYYQQPPPPQPPPSVAPPLQHHLVQPYFPQHPPPF 60

Query: 61  ASYALPLLPHTTSINEVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLRTPTQTTQPFA 120
           +SYA  L+P   S +EVRTLF+AGLPEDVKPREIYNLFREFPGYESSHLRTPT+ +QPFA
Sbjct: 61  SSYAPALVPQP-SHDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRTPTEKSQPFA 120

Query: 121 FAVFSDQQSAVGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTRTEEERYGSDKKAKVS 180
           FAVF DQQSA+GAMHA+NGMVFDLEK S LY+DLAKSNSRSKR+RT++ER GSDKKA+ S
Sbjct: 121 FAVFLDQQSAIGAMHALNGMVFDLEKGSTLYIDLAKSNSRSKRSRTDDERSGSDKKARGS 180

Query: 181 IIPRSTPDPAGLGSTHMSGMGNSAYNTIGYPSAQSHGSFDNKTVNDTVAANV-------I 240
              R  PD +G+GS HM GMGNSAYN IGYPSA SHG+F+   V++T+A NV        
Sbjct: 181 SYSRGAPD-SGVGSIHMPGMGNSAYNIIGYPSAPSHGNFNGIPVHETIAGNVNNSAAQHF 240

Query: 241 PQ-NPPCPTLFVANLGPGCTEQELIQIFLRCPGFLKLKMQSTYGAPVAFVDFQDTACSTG 300
           PQ N PCPT+FVANLGP CTEQELIQ+F RCPGF+KLKMQSTYGAPVAFVDFQDTACSTG
Sbjct: 241 PQNNTPCPTIFVANLGPTCTEQELIQVFSRCPGFIKLKMQSTYGAPVAFVDFQDTACSTG 300

Query: 301 ALNHLQGSILYSSPPGEGMRLEYAKSRMGMRKKPK 318
           AL+HLQG+ILYSS  GEGMRLEYAKSRMGMRKKPK
Sbjct: 301 ALSHLQGTILYSSTTGEGMRLEYAKSRMGMRKKPK 328

[Close]
BLAST of Csa6G491040 vs. NCBI nr
Match: gi|645277941|ref|XP_008244007.1| (PREDICTED: U2 small nuclear ribonucleoprotein B'' [Prunus mume])

HSP 1 Score: 471.1 bits (1211), Expect = 1.5e-129
Identity = 240/335 (71.64%), Postives = 267/335 (79.70%), Query Frame = 1 

Query: 1   MDDMTSYYPPPQPPPQPSGLEPPHYPYYQVPPPPSAPPS----------QHYLSQHPSTF 60
           MDDM +YYPPP PPP        HYPYYQ PPPP  PPS          Q Y  QHP  F
Sbjct: 1   MDDMAAYYPPPPPPPGSV-----HYPYYQQPPPPQPPPSVAPPLQHHLVQPYFPQHPPPF 60

Query: 61  ASYALPLLPHTTSINEVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLRTPTQTTQPFA 120
           +SYA  L+P   S +EVRTLF+AGLPEDVKPREIYNLFREFPGYESSHLRTPT+ +QPFA
Sbjct: 61  SSYAPALVPQP-SHDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRTPTEKSQPFA 120

Query: 121 FAVFSDQQSAVGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTRTEEERYGSDKKAKVS 180
           FAVF DQQSA+GAMHA+NGMVFDLEK S LY+DLAKSNSRSKR+RT++ER GSDKKA+ S
Sbjct: 121 FAVFLDQQSAIGAMHALNGMVFDLEKGSTLYIDLAKSNSRSKRSRTDDERSGSDKKARGS 180

Query: 181 IIPRSTPDPAGLGSTHMSGMGNSAYNTIGYPSAQSHGSFDNKTVNDTVAANV-------I 240
              R  PD +G+GS HM GMGNSAYN IGYPSA SHG+F+   V++T+A NV        
Sbjct: 181 SYSRGAPD-SGVGSIHMPGMGNSAYNIIGYPSAPSHGNFNGIPVHETIAGNVNNSAAQHF 240

Query: 241 PQ-NPPCPTLFVANLGPGCTEQELIQIFLRCPGFLKLKMQSTYGAPVAFVDFQDTACSTG 300
           PQ N PCPT+FVANLGP CTEQELIQ+F RCPGF+KLKMQSTYGAPVAFVDFQDTACS+G
Sbjct: 241 PQNNTPCPTIFVANLGPTCTEQELIQVFSRCPGFIKLKMQSTYGAPVAFVDFQDTACSSG 300

Query: 301 ALNHLQGSILYSSPPGEGMRLEYAKSRMGMRKKPK 318
           AL+HLQG+ILYSS  GEGMRLEYAKSRMGMRKKPK
Sbjct: 301 ALSHLQGTILYSSTTGEGMRLEYAKSRMGMRKKPK 328

The following BLAST results are available for this feature:
BLAST of Csa6G491040 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RBPS2_MOUSE1.3e-1443.33RNA-binding protein with multiple splicing 2 OS=Mus musculus GN=Rbpms2 PE=1 SV=1[more]
RBPS2_HUMAN1.7e-1443.33RNA-binding protein with multiple splicing 2 OS=Homo sapiens GN=RBPMS2 PE=1 SV=1[more]
RBPMS_CHICK2.8e-1443.33RNA-binding protein with multiple splicing OS=Gallus gallus GN=RBPMS PE=2 SV=1[more]
RBPMS_XENLA3.7e-1443.33RNA-binding protein with multiple splicing OS=Xenopus laevis GN=rbpms PE=2 SV=1[more]
RBPMS_HUMAN1.4e-1343.33RNA-binding protein with multiple splicing OS=Homo sapiens GN=RBPMS PE=1 SV=1[more]
BLAST of Csa6G491040 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KLD8_CUCSA1.4e-185100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G491040 PE=4 SV=1[more]
M5WFL2_PRUPE3.7e-13071.94Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa027064mg PE=4 SV=1[more]
D7SVT4_VITVI4.5e-12068.96Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0031g00180 PE=4 SV=... [more]
A0A067KAD2_JATCU3.0e-11667.39Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12434 PE=4 SV=1[more]
A0A059B155_EUCGR5.7e-11567.27Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H02095 PE=4 SV=1[more]
BLAST of Csa6G491040 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G42240.27.7e-7954.05 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT3G21215.13.1e-3531.83 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT3G13700.11.1e-3232.47 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
BLAST of Csa6G491040 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778718464|ref|XP_011657875.1|2.0e-185100.00PREDICTED: U1 small nuclear ribonucleoprotein A isoform X1 [Cucumis sativus][more]
gi|778718468|ref|XP_011657876.1|1.4e-18399.68PREDICTED: U1 small nuclear ribonucleoprotein A isoform X2 [Cucumis sativus][more]
gi|659079532|ref|XP_008440306.1|2.5e-18098.11PREDICTED: protein WHI4 [Cucumis melo][more]
gi|595834311|ref|XP_007206844.1|5.3e-13071.94hypothetical protein PRUPE_ppa027064mg [Prunus persica][more]
gi|645277941|ref|XP_008244007.1|1.5e-12971.64PREDICTED: U2 small nuclear ribonucleoprotein B'' [Prunus mume][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0000166nucleotide binding
GO:0003676nucleic acid binding
GO:0000166nucleotide binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:1901363 heterocyclic compound binding
molecular_function GO:0003723 RNA binding
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU152936cucumber EST collection version 3.0transcribed_cluster
CU175602cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa6G491040.2Csa6G491040.2mRNA
Csa6G491040.1Csa6G491040.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU152936CU152936transcribed_cluster
CU175602CU175602transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 70..133
score: 1.6E-10coord: 231..293
score: 8.
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 230..299
score: 0.0011coord: 69..141
score: 4.
IPR000504RNA recognition motif domainPROFILEPS50102RRMcoord: 229..307
score: 11.008coord: 68..147
score: 12
IPR012677Nucleotide-binding alpha-beta plait domainGENE3DG3DSA:3.30.70.330coord: 223..307
score: 7.3E-19coord: 62..146
score: 2.9
IPR012677Nucleotide-binding alpha-beta plait domainunknownSSF54928RNA-binding domain, RBDcoord: 67..157
score: 6.18E-23coord: 226..294
score: 6.18
NoneNo IPR availablePANTHERPTHR24012FAMILY NOT NAMEDcoord: 46..180
score: 7.5E-37coord: 220..313
score: 7.5
NoneNo IPR availablePANTHERPTHR24012:SF393SUBFAMILY NOT NAMEDcoord: 46..180
score: 7.5E-37coord: 220..313
score: 7.5

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa6G491040Cla013964Watermelon (97103) v1cuwmB500
Csa6G491040ClCG01G016950Watermelon (Charleston Gray)cuwcgB432
Csa6G491040Lsi01G009630Bottle gourd (USVL1VR-Ls)culsiB434
Csa6G491040MELO3C032955.2Melon (DHL92) v3.6.1cumedB483
Csa6G491040Cla97C01G016090Watermelon (97103) v2cuwmbB412
Csa6G491040Bhi03G000712Wax gourdcuwgoB621
Csa6G491040CSPI06G28270Wild cucumber (PI 183967)cpicuB313
Csa6G491040Cucsa.102570Cucumber (Gy14) v1cgycuB121
Csa6G491040CmaCh07G006920Cucurbita maxima (Rimu)cmacuB877
Csa6G491040CmoCh07G007080Cucurbita moschata (Rifu)cmocuB865
Csa6G491040CmoCh03G009840Cucurbita moschata (Rifu)cmocuB670
Csa6G491040Cp4.1LG19g11180Cucurbita pepo (Zucchini)cpecuB503
Csa6G491040CsGy6G027740Cucumber (Gy14) v2cgybcuB281
Csa6G491040Carg00832Silver-seed gourdcarcuB0441
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa6G491040Watermelon (97103) v2cuwmbB462
Csa6G491040Watermelon (97103) v2cuwmbB494
Csa6G491040Wax gourdcuwgoB577
Csa6G491040Wax gourdcuwgoB646
Csa6G491040Cucumber (Chinese Long) v2cucuB072
Csa6G491040Cucumber (Chinese Long) v2cucuB143
Csa6G491040Cucumber (Gy14) v1cgycuB497
Csa6G491040Cucumber (Gy14) v1cgycuB552
Csa6G491040Cucurbita maxima (Rimu)cmacuB033
Csa6G491040Cucurbita maxima (Rimu)cmacuB144
Csa6G491040Cucurbita maxima (Rimu)cmacuB347
Csa6G491040Cucurbita maxima (Rimu)cmacuB681
Csa6G491040Cucurbita maxima (Rimu)cmacuB809
Csa6G491040Cucurbita moschata (Rifu)cmocuB023
Csa6G491040Cucurbita moschata (Rifu)cmocuB176
Csa6G491040Cucurbita moschata (Rifu)cmocuB337
Csa6G491040Cucurbita moschata (Rifu)cmocuB475
Csa6G491040Cucurbita moschata (Rifu)cmocuB766
Csa6G491040Cucurbita moschata (Rifu)cmocuB801
Csa6G491040Melon (DHL92) v3.5.1cumeB470
Csa6G491040Melon (DHL92) v3.5.1cumeB501
Csa6G491040Melon (DHL92) v3.5.1cumeB503
Csa6G491040Watermelon (Charleston Gray)cuwcgB471
Csa6G491040Watermelon (Charleston Gray)cuwcgB503
Csa6G491040Watermelon (97103) v1cuwmB461
Csa6G491040Watermelon (97103) v1cuwmB495
Csa6G491040Cucurbita pepo (Zucchini)cpecuB085
Csa6G491040Cucurbita pepo (Zucchini)cpecuB124
Csa6G491040Cucurbita pepo (Zucchini)cpecuB229
Csa6G491040Cucurbita pepo (Zucchini)cpecuB256
Csa6G491040Cucurbita pepo (Zucchini)cpecuB468
Csa6G491040Cucurbita pepo (Zucchini)cpecuB583
Csa6G491040Cucurbita pepo (Zucchini)cpecuB686
Csa6G491040Bottle gourd (USVL1VR-Ls)culsiB454
Csa6G491040Bottle gourd (USVL1VR-Ls)culsiB474
Csa6G491040Cucumber (Gy14) v2cgybcuB082
Csa6G491040Cucumber (Gy14) v2cgybcuB186
Csa6G491040Melon (DHL92) v3.6.1cumedB452
Csa6G491040Melon (DHL92) v3.6.1cumedB481
Csa6G491040Silver-seed gourdcarcuB0205
Csa6G491040Silver-seed gourdcarcuB0409
Csa6G491040Silver-seed gourdcarcuB0826