Carg00832 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg00832
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Rna-binding protein with multiple splicing 2
Location	Cucurbita_argyrosperma_scaffold_014 : 1687559 .. 1693145 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATCCGACCCAAAATTCAGGGCTTCCACCTCTCTCTTTCTCTCTCTCTACTTTCTCAAACTCAGACTCGGAGAGAACAGCACTCCGATGGACGACATAACGAGCTACTACGCGCCACCTCCGCAACCGCAACCACCGTCGCAGCCTTCTGGTCTTGAGGCGCCTCACTATCCCTATTACCAGGTGCCTCCTCCTCCTTCTTCAGCACCGTCGTCTCAGCATTACCTCGCTCAACACCCGCCAACCTTCGCTTCCTATGGCTTACCTTTTTTACCTCACGCAGCCTCCATTAATGAGGTCCGAACCCTATTCATAGCTGGCCTTCCTGACGATGTCAAGCCCCGAGAAATTTACAATCTCTTCCGGGAGTTTCCGGGCTACGAGTCCTCTCATCTTCGGAGCCCCACGCAGACGACCCAGGTGTTGTACTTTGTTTTTCTAATTTGCAAAATTGTTGATTCTCGTAGCATTTTCTTTTTATTCTGAATGAGAATAGTCACTTAATTTGGGTGCCTGGATGCTTACATATGTAAATACTCTTAGCTTCTAGAGTCTGACGTCTGAGTAAACTCGTGGACATTAGTTGCTTTAGTATCAAAGATGGAGATTAAACACCGGTTCGTAGACGATTCTGGTTTGGTTACTGTACGTTTCAGGTTCTTGAAGAAGTTCAAGATTATAATTGTTATACGTAATTAACTTGGACCTGGTTTATTTTGGCTCATTATAATTCATCTTGACCAAGTATGTTAATGTTATTTAGGGAAGGCTTGGGATGAATCCATGGTAGCCATCTAGCTAGAATTTAATGCCCTACAAGTTTGCTTAACACCTGTCATGACACGACCATGCAACTGGACCGATCAAAAAGTAAGAAACAAAAATTTAATAAGGTAAACCACATTTCTAATGAAAAAAAAAAAAAAAGAAAAGAAATAAACCTAATTCTCAAGACGTAATTCAACATGGCATGGAAACACTCAAATGCCTACTCTGAGATTTGTTAAATAAACTATAAATGTGCTGTGTCATACTCTAAAGGAAATGTCAGTATCAATATTGGTGCCAATACGGTTGCCAATAGCCTAATACCAATGCAAATGTGCAATCTGGTGCTTATGTGGCTCGATTGGCCTACTAAATTTTAGTGGCATGCAACTTTTTAACATTAACCCCTTTCACCCATCACCATTCCACAATGCTATGGAGCATGAGCACCTTTGTCATGTTTGGAACTATAGCTTTTGCTCTGCTCCTTTCACAATGTTTGTGAAACCCTTCTTCAATGAAATCACTTTACCTGTCAATGACTACAGGAGCCGTGACCTTCCACTTATCTGCCTTAGCCAAGAAGTAGCAGAGAGTTTTTCATGTCCTGGACAACAAATATGACTTGGTCGGTGTCATTTTTATGCATGAAAAATTCCTTAGTCTTTGCAATTCGAATTCAACTTTGACCAATCTAAACCTTTTTGCTAGAATTTCTTTGGTTAAAAATCTTGCTCAGTAACTTCCAATGCACATTTAGATCACGACGTTACACGTGTAATAATATTCTATGTTGCTTTCTTTTGTACTATTTAATTGGATGATAGTGACTTGTACTTTAGACAGATGTGTTTTAATGTCAGGGCAGCAAACTTTTTTTGCAATGCCTAGACAGGCTTGGTTTGTGTTATTAGTATCCATGTTTAAGGGTTCTCAAGTTAGTCGATGTAATCTCAGGTTCTGGGATGGTCATAGTGGTCATACGAAAGCTTGGGGACTTTTGTTTTCAACTAACAAATGCTATCCCAAGTGCTTTGGAGACCATAAACTGAGATATTAATATCCCACGTTTACAACTAACAAATATTATGCTAATTGTTAGTTTCAAATCTAGTTAATATTGAAAGCTTGCGGACCTTTGTTTGTAAAGGAAATTTACCAACTTTCTATATTCTCAACCAACAATCTACATTGGTGCAATAAGTTGTCGCATATTTATGCAAGTACCCTTCAGATATGTGTACCGAGTGCCTATGACTATCACTGTAACTTGTAAAAGCCTTTTCTATTCCTTTTCCATTCTCTCACGAAATATCTTATGTATACAGCATTCCTATCATCGCTTGTGTTGATGGTAGAGCATATATTTTATTGATTAGCATCATGCATGGTTTTTTCTTACAATTTTTTTGGTGTGGTTACAGCCATTTGCATTTGCTGTATTCTCGGACCAGCAGTCTGCCGTAGGTGCAATGCATGCCGTAAATGTAAGTACTTGTTCCCTGCTTCAGTATTCCAAATTCTTTCATTAAGAAAATCATTTCAATGATCAAAGGAAGTACACAAAATGAACGTGGAAGAAGAAATTAGCCCTGCCTTGGAGGATAAGCTCACCCCATCTTAAATCAGATCAGCAAGGAAAACTATCATGAGAACTATCGTGCAATATAGAAAAGCATTTATTTCTGAATTTCTTATTAACAGCTAGAAGAGCTTCAAACTTCTGTAGCTTTCTGAAGGGAGCTGCCAAAGCAAAGCCAAGTATATAGAATCAAAACATTCTCCTCTTGTAATCTAATCCTCCAAACAAATTCATTGAAGTAATGACGTTACAATATCAGGGAACTCTTTCCATATATCAAATTTGTTTAAAACCCTGAGTTTGATTTACTATAGTACCTTATGCATTGTTCGTCATTCATTGACCTTAAAAATAAGGTGGACGCTGGACAGCTATCATTGCTGCTGTAACACTAAACTGTTAGGGTTTGGGGAACTCGTGAGGTACACTAAATTTCTTTGGGATCCTGAATCTTGAGCTCGATTTGAGTCATTCATTGACCTGACGGATAAGGTAGACAGCTATTGTTGCTGCTATAACACTAAACAGTTACCAATTCCTGGATTACCATTTTTCTGCTGGGCTTTCTTTTGCCTCTTATGCTTTCTCACTCTCTACTTATTCCTCTATAGAATAGCTGTTCTAAAAGTGCGCTACTTAAGGTATTCCAAGCATTGGTATAAAAAGATTTCTACTCTAGGTAGTGTCTCACATTAAAACAATTGGTTGCTCTTTGTTGTAGGGGATGGTGTTTGATCTTGAGAAGCAGTCAGTACTATATGTTGATTTAGCTAAATCCAATTCAAGATCAAAACGGACGAGGACAGGTACATATCTTGATGGCTGTCCTCTTATGAATTTATATTTCAATTTCTATTTTCTACAGTGGTATAACTAGTTTGAAATTTTTCGTCATGTGTTCATGGAATGGTTAGAGGATGAAAGATATGGATCGGATAAGAAAGCTAAAGTATCTATCTTTTCAAGGAGCACTCCTGATCCTGGTAAGTTGATTGCTTGACTCCTTTTCTGCCTGTAAACTCTTTCTTATACAAGCTTTTTCAAAAATTAATTAATTAAATAAATTTTTTGTCCTTTTGATACCACTTACGAGTATTATCATGATTACTTTTAATGTATAAACCTGTCCTCTCTGATTTGAGGATGATTATGTGCTACCTGTACAACCTCTTGGGGTAAGAAGTAATTGATTAGCCACGCAGGGGACACATTATTCTAAAAGCTCATTTTGCACATGTTTTGCACGCTTGGGCACTAGCAGGTCTTGGCAGCACTCACATGTCTGGAATGGGTAATTCTGCTTACAACACGATTGGTTATCCATCTGCACAAAGGTCATCTGCACTACTTAGCACATCTTTATTATTGAAATGGTTGATTACAAGCTTATGTGAAGCTTATACATTATTGTATAACAATAATCACTAGTAGAATGTCCAAGGGCTTCAGTAAAAAGCTCTACTACATGCCCTGACTTCTGTGTTAGTTTTTAACTTTATACTTGCGTTATTATGTTTCTTCTTCTCTGTCCTAACTAACTTGCACTTTCTATCATCAGCCATGGAAGCTTTGATAGCAAAACTGTAAATGATACAGTGGCTGCAAATGTGGTAAGGTCACTTTTTGTTGCAATTTGTGATTCTGCAGTCCCTATAAGCTGTGCCCTTAATTCCTCCCTTTTCTGTCCAAAAAGCATTATATTACCAATAATTGAACTACTTATCCTAATAAAAGTAGCAAGTAATTTTTCATTCAATTATATAGCAAATTGGGATAACATTCACGGTATTAGCCCAAACTGTTTTAACTTTCATTTTCTATCCTTTTGAAATTGGCTACTCATTTTCCTTTAAATTTTTATAGTTCAATGTCTGTCTATGGGCTTCTTTGTTGTACTGTGGTTTATTTTGACGAAAATAATCATAAGAATGGTTTTGAGGGTAGATGGGTTGCGGGAGGATGTGTGGATATGGTGGACACACTGTAATGCCTCCCCATGGGGTCGTAATTCGAAATCGTTTCTTAACATTTGTATTTACCAAAAGTTGATTTCTTGTAGGTTGGTTTGTATTCCACACTTCTCTTTTGGCCTTCCTGTGGGTTTCTTTTAGTACTTGTAGTGAAAAATTAATTTTCCCATTACAAAATAATGACCTCTCTAACGGGAGGCTTAACTTACCGTGAACAAACAAAGGGGAAACTTTATTTACCAACTTCTACAATAATATTGGCACGTATTCCTTTTGTTTTTTGTTGTCCCTTTTCAAGTGGAGGGGAATTCTGGGAACAGGGCTGCAACCATATTAAATCTGGTTAATTTGAAGTTTCTTCCATGTCATATTTAATACTTAGACGTAAATAAAGTCACCTTGTGTTTAGGTGAAAATATCTTAGTTATGTGTGAATGACCTTGTGTAGCCCAATCTATGTAGTGACTTATTGTTAACTTTGGCTTAATTATTCTTCATTTCCAGACCCCTCAAAATCCCCCATGTCCAACACTTTTTGTGGCAAATCTAGGGCCAAGTTGCACAGAGCAAGAACTTATTCAAATTTTTTCTAGGTTGGTAATTTACTGCACGTTATTGGGTTATGTTCTGATCTTAGAACTTGTATTATCTGTTTATTTGATTATTCCTTCCAGATGCCCGGGGTTTTTAAAACTAAAGATGCAGAGCACGTATGGGGCCCCAGTTGCTTTTGTTGATTTTCAGGTTAGCAGAGCCCTTCCTTTTCTCAACATTATTTTCCTGTTGTTGATATTTGTTTTTCTACTTCAATGGTTCAGGATACCGCCTGTTCAACTGGAGCACTGAACCATCTGCAAGGCTCAATTCTGTACTCATCACCTCCTGGGGAGGGCATGCGATTGGAGTATCCTTTTGCAAGATTATTATTCTTTACAACTGCACTGCTACACCATGTCTTCAAATGTTTTGCTTAACCCAGAATTTAGGTACGCAAAATCACGAATGGGTATGCGAAAGAAATTGAAATGAATAATACAAGGAGCGAGAACAGGAGCCAAAAAGGAAGTCAAGTAAAGAGAAACCCTCGGGCGATGTTCCCACATGAATCTATGAAGGCCAGAGGAGTTTCATTACTTGTACTGTTGTGCAGGTGAGTAAATTTGCCACATATGCGATGCCCATTTTTTGATTGTATGTATCAAATTCCATGCTCATTGGATAACGCTGATAAAGCTGTTCCAATATGTATTGTAATATTATGGTATGTC

mRNA sequence

AATCCGACCCAAAATTCAGGGCTTCCACCTCTCTCTTTCTCTCTCTCTACTTTCTCAAACTCAGACTCGGAGAGAACAGCACTCCGATGGACGACATAACGAGCTACTACGCGCCACCTCCGCAACCGCAACCACCGTCGCAGCCTTCTGGTCTTGAGGCGCCTCACTATCCCTATTACCAGGTGCCTCCTCCTCCTTCTTCAGCACCGTCGTCTCAGCATTACCTCGCTCAACACCCGCCAACCTTCGCTTCCTATGGCTTACCTTTTTTACCTCACGCAGCCTCCATTAATGAGGTCCGAACCCTATTCATAGCTGGCCTTCCTGACGATGTCAAGCCCCGAGAAATTTACAATCTCTTCCGGGAGTTTCCGGGCTACGAGTCCTCTCATCTTCGGAGCCCCACGCAGACGACCCAGCCATTTGCATTTGCTGTATTCTCGGACCAGCAGTCTGCCGTAGGTGCAATGCATGCCGTAAATGGGATGGTGTTTGATCTTGAGAAGCAGTCAGTACTATATGTTGATTTAGCTAAATCCAATTCAAGATCAAAACGGACGAGGACAGAGGATGAAAGATATGGATCGGATAAGAAAGCTAAAGTATCTATCTTTTCAAGGAGCACTCCTGATCCTGGTAAGTTGATTGCTTGACTCCTTTTCTGCCTGTAAACTCTTTCTTATACAAGCTTTTTCAAAAATTAATTAATTAAATAAATTTTTTGTCCTTTTGATACCACTTACGAGTATTATCATGATTACTTTTAATGTATAAACCTGTCCTCTCTGATTTGAGGATGATTATGTGCTACCTGTACAACCTCTTGGGTTTATACTTGCGTTATTATGTTTCTTCTTCTCTGTCCTAACTAACTTGCACTTTCTATCATCAGCCATGGAAGCTTTGATAGCAAAACTGTAAATGATACAGTGGCTGCAAATGTGACCCCTCAAAATCCCCCATGTCCAACACTTTTTGTGGCAAATCTAGGGCCAAGTTGCACAGAGCAAGAACTTATTCAAATTTTTTCTAGATGCCCGGGGTTTTTAAAACTAAAGATGCAGAGCACGTATGGGGCCCCAGTTGCTTTTGTTGATTTTCAGGATACCGCCTGTTCAACTGGAGCACTGAACCATCTGCAAGGCTCAATTCTGTACTCATCACCTCCTGGGGAGGGCATGCGATTGGAGTACGCAAAATCACGAATGGGTATGCGAAAGAAATTGAAATGAATAATACAAGGAGCGAGAACAGGAGCCAAAAAGGAAGTCAAGTAAAGAGAAACCCTCGGGCGATGTTCCCACATGAATCTATGAAGGCCAGAGGAGTTTCATTACTTGTACTGTTGTGCAGGTGAGTAAATTTGCCACATATGCGATGCCCATTTTTTGATTGTATGTATCAAATTCCATGCTCATTGGATAACGCTGATAAAGCTGTTCCAATATGTATTGTAATATTATGGTATGTC

Coding sequence (CDS)

ATGGACGACATAACGAGCTACTACGCGCCACCTCCGCAACCGCAACCACCGTCGCAGCCTTCTGGTCTTGAGGCGCCTCACTATCCCTATTACCAGGTGCCTCCTCCTCCTTCTTCAGCACCGTCGTCTCAGCATTACCTCGCTCAACACCCGCCAACCTTCGCTTCCTATGGCTTACCTTTTTTACCTCACGCAGCCTCCATTAATGAGGTCCGAACCCTATTCATAGCTGGCCTTCCTGACGATGTCAAGCCCCGAGAAATTTACAATCTCTTCCGGGAGTTTCCGGGCTACGAGTCCTCTCATCTTCGGAGCCCCACGCAGACGACCCAGCCATTTGCATTTGCTGTATTCTCGGACCAGCAGTCTGCCGTAGGTGCAATGCATGCCGTAAATGGGATGGTGTTTGATCTTGAGAAGCAGTCAGTACTATATGTTGATTTAGCTAAATCCAATTCAAGATCAAAACGGACGAGGACAGAGGATGAAAGATATGGATCGGATAAGAAAGCTAAAGTATCTATCTTTTCAAGGAGCACTCCTGATCCTGGTAAGTTGATTGCTTGA

Protein sequence

MDDITSYYAPPPQPQPPSQPSGLEAPHYPYYQVPPPPSSAPSSQHYLAQHPPTFASYGLPFLPHAASINEVRTLFIAGLPDDVKPREIYNLFREFPGYESSHLRSPTQTTQPFAFAVFSDQQSAVGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTRTEDERYGSDKKAKVSIFSRSTPDPGKLIA

Homology

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BLAST of Carg00832 vs. NCBI nr
Match: XP_022949757.1 (protein WHI4 isoform X2 [Cucurbita moschata])

HSP 1 Score: 329.7 bits (844), Expect = 6.4e-87
Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 0


Query: 1   MDDITSYYAPPPQPQPPSQPSGLEAPHYPXXXXXXXXXXXXXXXXXLAQHPPTFASYGLP 60
           MDDITSYYAPPPQPQPPSQPSGLEAPHYPXXXXXXXXXXXXXXXXXLAQHPPTFASYGLP
Sbjct: 1   MDDITSYYAPPPQPQPPSQPSGLEAPHYPXXXXXXXXXXXXXXXXXLAQHPPTFASYGLP 60

Query: 61  FLPHAASINEVRTLFIAGLPDDVKPREIYNLFREFPGYESSHLRSPTQTTQPFAFAVFSD 120
           FLPHAASINEVRTLFIAGLPDDVKPREIYNLFREFPGYESSHLRSPTQTTQPFAFAVFSD
Sbjct: 61  FLPHAASINEVRTLFIAGLPDDVKPREIYNLFREFPGYESSHLRSPTQTTQPFAFAVFSD 120

Query: 121 QQSAVGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTRTEDERYGSDKKAKVSIFSRST 180
           QQSAVGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTRTEDERYGSDKKAKVSIFSRST
Sbjct: 121 QQSAVGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTRTEDERYGSDKKAKVSIFSRST 180

Query: 181 PDPG 185
           PDPG
Sbjct: 181 PDPG 184

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BLAST of Carg00832 vs. NCBI nr
Match: XP_022949756.1 (U1 small nuclear ribonucleoprotein A isoform X1 [Cucurbita moschata])

HSP 1 Score: 328.6 bits (841), Expect = 1.4e-86
Identity = 184/186 (98.92%), Postives = 184/186 (98.92%), Query Frame = 0


Query: 1   MDDITSYYAPPPQPQPPSQPSGLEAPHYPXXXXXXXXXXXXXXXXXLAQHPPTFASYGLP 60
           MDDITSYYAPPPQPQPPSQPSGLEAPHYPXXXXXXXXXXXXXXXXXLAQHPPTFASYGLP
Sbjct: 1   MDDITSYYAPPPQPQPPSQPSGLEAPHYPXXXXXXXXXXXXXXXXXLAQHPPTFASYGLP 60

Query: 61  FLPHAASINEVRTLFIAGLPDDVKPREIYNLFREFPGYESSHLRSPTQTTQPFAFAVFSD 120
           FLPHAASINEVRTLFIAGLPDDVKPREIYNLFREFPGYESSHLRSPTQTTQPFAFAVFSD
Sbjct: 61  FLPHAASINEVRTLFIAGLPDDVKPREIYNLFREFPGYESSHLRSPTQTTQPFAFAVFSD 120

Query: 121 QQSAVGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTRTEDERYGSDKKAKVSIFSRST 180
           QQSAVGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTRTEDERYGSDKKAKVSIFSRST
Sbjct: 121 QQSAVGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTRTEDERYGSDKKAKVSIFSRST 180

Query: 181 PDPGKL 187
           PDP  L
Sbjct: 181 PDPAGL 186

[Close]

BLAST of Carg00832 vs. NCBI nr
Match: XP_023543723.1 (protein WHI4 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 328.2 bits (840), Expect = 1.9e-86
Identity = 183/184 (99.46%), Postives = 184/184 (100.00%), Query Frame = 0


Query: 1   MDDITSYYAPPPQPQPPSQPSGLEAPHYPXXXXXXXXXXXXXXXXXLAQHPPTFASYGLP 60
           MDDITSYYAPPPQPQPPSQPSGLEAPHYPXXXXXXXXXXXXXXXXXLAQHPPTFASYGLP
Sbjct: 1   MDDITSYYAPPPQPQPPSQPSGLEAPHYPXXXXXXXXXXXXXXXXXLAQHPPTFASYGLP 60

Query: 61  FLPHAASINEVRTLFIAGLPDDVKPREIYNLFREFPGYESSHLRSPTQTTQPFAFAVFSD 120
           FLPHAASINEVRTLFIAGLP+DVKPREIYNLFREFPGYESSHLRSPTQTTQPFAFAVFSD
Sbjct: 61  FLPHAASINEVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLRSPTQTTQPFAFAVFSD 120

Query: 121 QQSAVGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTRTEDERYGSDKKAKVSIFSRST 180
           QQSAVGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTRTEDERYGSDKKAKVSIFSRST
Sbjct: 121 QQSAVGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTRTEDERYGSDKKAKVSIFSRST 180

Query: 181 PDPG 185
           PDPG
Sbjct: 181 PDPG 184

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BLAST of Carg00832 vs. NCBI nr
Match: XP_023543722.1 (uncharacterized protein LOC111803516 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 327.0 bits (837), Expect = 4.2e-86
Identity = 183/186 (98.39%), Postives = 184/186 (98.92%), Query Frame = 0


Query: 1   MDDITSYYAPPPQPQPPSQPSGLEAPHYPXXXXXXXXXXXXXXXXXLAQHPPTFASYGLP 60
           MDDITSYYAPPPQPQPPSQPSGLEAPHYPXXXXXXXXXXXXXXXXXLAQHPPTFASYGLP
Sbjct: 1   MDDITSYYAPPPQPQPPSQPSGLEAPHYPXXXXXXXXXXXXXXXXXLAQHPPTFASYGLP 60

Query: 61  FLPHAASINEVRTLFIAGLPDDVKPREIYNLFREFPGYESSHLRSPTQTTQPFAFAVFSD 120
           FLPHAASINEVRTLFIAGLP+DVKPREIYNLFREFPGYESSHLRSPTQTTQPFAFAVFSD
Sbjct: 61  FLPHAASINEVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLRSPTQTTQPFAFAVFSD 120

Query: 121 QQSAVGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTRTEDERYGSDKKAKVSIFSRST 180
           QQSAVGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTRTEDERYGSDKKAKVSIFSRST
Sbjct: 121 QQSAVGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTRTEDERYGSDKKAKVSIFSRST 180

Query: 181 PDPGKL 187
           PDP  L
Sbjct: 181 PDPAGL 186

[Close]

BLAST of Carg00832 vs. NCBI nr
Match: XP_022977593.1 (protein WHI4 isoform X1 [Cucurbita maxima])

HSP 1 Score: 323.9 bits (829), Expect = 3.5e-85
Identity = 181/184 (98.37%), Postives = 182/184 (98.91%), Query Frame = 0


Query: 1   MDDITSYYAPPPQPQPPSQPSGLEAPHYPXXXXXXXXXXXXXXXXXLAQHPPTFASYGLP 60
           MDDITSYYAPPPQPQPPSQPSGLEAPHYPXXXXXXXXXXXXXXXXXLAQHPPTFASYGLP
Sbjct: 1   MDDITSYYAPPPQPQPPSQPSGLEAPHYPXXXXXXXXXXXXXXXXXLAQHPPTFASYGLP 60

Query: 61  FLPHAASINEVRTLFIAGLPDDVKPREIYNLFREFPGYESSHLRSPTQTTQPFAFAVFSD 120
           FLPHAASINEVRTLFIAGLP+DVKPREIYNLFREFPGYESSHLRSPTQTTQPFAFAVFSD
Sbjct: 61  FLPHAASINEVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLRSPTQTTQPFAFAVFSD 120

Query: 121 QQSAVGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTRTEDERYGSDKKAKVSIFSRST 180
           QQSAVGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKR RTEDERYGSDKKAKVSIFSR T
Sbjct: 121 QQSAVGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRMRTEDERYGSDKKAKVSIFSRRT 180

Query: 181 PDPG 185
           PDPG
Sbjct: 181 PDPG 184

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BLAST of Carg00832 vs. TAIR10
Match: AT2G42240.2 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 146.4 bits (368), Expect = 1.8e-35
Identity = 87/168 (51.79%), Postives = 106/168 (63.10%), Query Frame = 0


Query: 1   MDDITSYY------APPPQPQPPSQPSGLEAPHYPXXXXXXXXXXXXXXXXXLAQHPPTF 60
           MDD+ +YY      A  P P P   P  + + H                    + + PT 
Sbjct: 1   MDDLEAYYSHYNLPAMVPPPPPGVSPIPITSAH--------------------SVYLPTH 60

Query: 61  ASYGLPFLPHAASINEVRTLFIAGLPDDVKPREIYNLFREFPGYESSHLRSPTQTTQPFA 120
            S G        + +EVRTLF+AGLP+DVKPREIYNLFREFPGYE+SHLRS +   +PFA
Sbjct: 61  VSIG--------ARDEVRTLFVAGLPEDVKPREIYNLFREFPGYETSHLRS-SDGAKPFA 120

Query: 121 FAVFSDQQSAVGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTRTED 163
           FAVFSD QSAV  MHA+NGMVFDLEK S L++DLAKSN +SKR+RT+D
Sbjct: 121 FAVFSDLQSAVAVMHALNGMVFDLEKHSTLHIDLAKSNPKSKRSRTDD 139

[Close]

BLAST of Carg00832 vs. TAIR10
Match: AT3G21215.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 81.3 bits (199), Expect = 7.2e-16
Identity = 46/105 (43.81%), Postives = 64/105 (60.95%), Query Frame = 0


Query: 69  NEVRTLFIAGLPDDVKPREIYNLFREFPGYESSHLRSPTQTTQPFAFAVFSDQQSAVGAM 128
           +E+RT+FIAGLPDDVK RE+ NL R  PGYE+S +    +  +P  FA+FS  Q A+ A 
Sbjct: 56  DELRTIFIAGLPDDVKERELLNLLRWLPGYEASQVNFKGE--KPMGFALFSTAQFAMAAK 115

Query: 129 HAVNGMVFDLEKQSVLYVDLAKSNSRSKRTRTEDER-YGSDKKAK 173
             +  MVFD E +SV++ ++AK N   KR    D   Y   K+ +
Sbjct: 116 DTLQHMVFDAESKSVIHTEMAKKNLFVKRGIVGDSNAYDQSKRLR 158

[Close]

BLAST of Carg00832 vs. TAIR10
Match: AT3G13700.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 72.4 bits (176), Expect = 3.3e-13
Identity = 50/139 (35.97%), Postives = 69/139 (49.64%), Query Frame = 0


Query: 47  LAQHPP--TFASYGLPFLPH---------AASINEVRTLFIAGLPDDVKPREIYNLFREF 106
           +A H P   F  Y L   PH         A     + TLF++GLP+DVK REI+NLFR  
Sbjct: 1   MAYHQPYDPFYVYQLHSHPHHLPPQLPLLADEPGAINTLFVSGLPNDVKAREIHNLFRRR 60

Query: 107 PGYESSHLR------------------SPTQTTQPFAFAVFSDQQSAVGAMHAVNGMVFD 157
            G+ES  L+                   P       AFA F+  + A+ AM+ +NG+ FD
Sbjct: 61  HGFESCQLKYTGRGDQVCKNLQFLFFFIPIFRKAVVAFATFTSHRFALAAMNELNGVKFD 120

[Close]

BLAST of Carg00832 vs. TAIR10
Match: AT1G02840.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 44.3 bits (103), Expect = 9.7e-05
Identity = 27/84 (32.14%), Postives = 44/84 (52.38%), Query Frame = 0


Query: 72  RTLFIAGLPDDVKPREIYNLFREFPGYESSHLRSPTQTTQPFAFAVFSDQQSAVGAMHAV 131
           RT+++  LP D++ RE+ +LF ++       L+ P +    +AF  F D + A  A+H  
Sbjct: 7   RTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPR-PPGYAFVEFDDARDAEDAIHGR 66

Query: 132 NGMVFDLEKQSVLYVDLAKSNSRS 156
           +G  FD  +   L V+LA    RS
Sbjct: 67  DGYDFDGHR---LRVELAHGGRRS 86

[Close]

BLAST of Carg00832 vs. Swiss-Prot
Match: sp|Q8VC52|RBPS2_MOUSE (RNA-binding protein with multiple splicing 2 OS=Mus musculus OX=10090 GN=Rbpms2 PE=1 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 2.2e-14
Identity = 39/90 (43.33%), Postives = 60/90 (66.67%), Query Frame = 0


Query: 70  EVRTLFIAGLPDDVKPREIYNLFREFPGYESSHLRSPTQTTQPFAFAVFSDQQSAVGAMH 129
           EVRTLF++GLP D+KPRE+Y LFR F GYE S ++  ++  QP  F +F  +  A  A +
Sbjct: 23  EVRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTSR--QPVGFVIFDSRAGAEAAKN 82

Query: 130 AVNGMVFDLEKQSVLYVDLAKSNSRSKRTR 160
           A+NG+ FD E    L ++ AK+N++  +++
Sbjct: 83  ALNGIRFDPENPQTLRLEFAKANTKMAKSK 110

[Close]

BLAST of Carg00832 vs. Swiss-Prot
Match: sp|Q6ZRY4|RBPS2_HUMAN (RNA-binding protein with multiple splicing 2 OS=Homo sapiens OX=9606 GN=RBPMS2 PE=1 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 2.9e-14
Identity = 39/90 (43.33%), Postives = 59/90 (65.56%), Query Frame = 0


Query: 70  EVRTLFIAGLPDDVKPREIYNLFREFPGYESSHLRSPTQTTQPFAFAVFSDQQSAVGAMH 129
           EVRTLF++GLP D+KPRE+Y LFR F GYE S ++   +  QP  F +F  +  A  A +
Sbjct: 29  EVRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTAR--QPVGFVIFDSRAGAEAAKN 88

Query: 130 AVNGMVFDLEKQSVLYVDLAKSNSRSKRTR 160
           A+NG+ FD E    L ++ AK+N++  +++
Sbjct: 89  ALNGIRFDPENPQTLRLEFAKANTKMAKSK 116

[Close]

BLAST of Carg00832 vs. Swiss-Prot
Match: sp|Q9W6I1|RBPS2_CHICK (RNA-binding protein with multiple splicing 2 OS=Gallus gallus OX=9031 GN=RBPMS2 PE=1 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 4.9e-14
Identity = 39/90 (43.33%), Postives = 59/90 (65.56%), Query Frame = 0


Query: 70  EVRTLFIAGLPDDVKPREIYNLFREFPGYESSHLRSPTQTTQPFAFAVFSDQQSAVGAMH 129
           EVRTLF++GLP D+KPRE+Y LFR F GYE S ++  ++  QP  F  F  +  A  A +
Sbjct: 20  EVRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTSK--QPVGFVTFDSRAGAEAAKN 79

Query: 130 AVNGMVFDLEKQSVLYVDLAKSNSRSKRTR 160
           A+NG+ FD E    L ++ AK+N++  +++
Sbjct: 80  ALNGIRFDPENPQTLRLEFAKANTKMAKSK 107

[Close]

BLAST of Carg00832 vs. Swiss-Prot
Match: sp|Q9YGP5|RBPS2_XENLA (RNA-binding protein with multiple splicing 2 OS=Xenopus laevis OX=8355 GN=rbpms2 PE=2 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 4.9e-14
Identity = 39/90 (43.33%), Postives = 59/90 (65.56%), Query Frame = 0


Query: 70  EVRTLFIAGLPDDVKPREIYNLFREFPGYESSHLRSPTQTTQPFAFAVFSDQQSAVGAMH 129
           EVRTLF++GLP D+KPRE+Y LFR F GYE S ++  ++  QP  F  F ++  A  A +
Sbjct: 18  EVRTLFVSGLPIDIKPRELYLLFRPFKGYEGSLIKLTSK--QPVGFVTFDNRAGAEAAKN 77

Query: 130 AVNGMVFDLEKQSVLYVDLAKSNSRSKRTR 160
           A+NG+ FD E    L ++ AK+N++  + +
Sbjct: 78  ALNGIRFDPENPQTLRLEFAKANTKMAKNK 105

[Close]

BLAST of Carg00832 vs. Swiss-Prot
Match: sp|Q93062|RBPMS_HUMAN (RNA-binding protein with multiple splicing OS=Homo sapiens OX=9606 GN=RBPMS PE=1 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 2.4e-13
Identity = 39/90 (43.33%), Postives = 58/90 (64.44%), Query Frame = 0


Query: 70  EVRTLFIAGLPDDVKPREIYNLFREFPGYESSHLRSPTQTTQPFAFAVFSDQQSAVGAMH 129
           EVRTLF++GLP D+KPRE+Y LFR F GYE S ++  ++  QP  F  F  +  A  A +
Sbjct: 22  EVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSK--QPVGFVSFDSRSEAEAAKN 81

Query: 130 AVNGMVFDLEKQSVLYVDLAKSNSRSKRTR 160
           A+NG+ FD E    L ++ AK+N++  + +
Sbjct: 82  ALNGIRFDPEIPQTLRLEFAKANTKMAKNK 109

[Close]

BLAST of Carg00832 vs. TrEMBL
Match: tr|A0A1S3B1E9|A0A1S3B1E9_CUCME (protein WHI4 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103484791 PE=4 SV=1)

HSP 1 Score: 263.5 bits (672), Expect = 3.7e-67
Identity = 130/136 (95.59%), Postives = 132/136 (97.06%), Query Frame = 0


Query: 49  QHPPTFASYGLPFLPHAASINEVRTLFIAGLPDDVKPREIYNLFREFPGYESSHLRSPTQ 108
           QHPPTFASYGLP LPH  SINEVRTLFIAGLP+DVKPREIYNLFREFPGYESSHLR+PTQ
Sbjct: 84  QHPPTFASYGLPLLPHTTSINEVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLRTPTQ 143

Query: 109 TTQPFAFAVFSDQQSAVGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTRTEDERYGSD 168
           TTQPFAFAVFSDQQSAVGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTRTEDERYGSD
Sbjct: 144 TTQPFAFAVFSDQQSAVGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTRTEDERYGSD 203

Query: 169 KKAKVSIFSRSTPDPG 185
           KKAKVSI SRSTPDPG
Sbjct: 204 KKAKVSIISRSTPDPG 219

[Close]

BLAST of Carg00832 vs. TrEMBL
Match: tr|A0A1S4DUH9|A0A1S4DUH9_CUCME (U1 small nuclear ribonucleoprotein A isoform X1 OS=Cucumis melo OX=3656 GN=LOC103484791 PE=4 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 1.1e-66
Identity = 130/138 (94.20%), Postives = 132/138 (95.65%), Query Frame = 0


Query: 49  QHPPTFASYGLPFLPHAASINEVRTLFIAGLPDDVKPREIYNLFREFPGYESSHLRSPTQ 108
           QHPPTFASYGLP LPH  SINEVRTLFIAGLP+DVKPREIYNLFREFPGYESSHLR+PTQ
Sbjct: 84  QHPPTFASYGLPLLPHTTSINEVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLRTPTQ 143

Query: 109 TTQPFAFAVFSDQQSAVGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTRTEDERYGSD 168
           TTQPFAFAVFSDQQSAVGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTRTEDERYGSD
Sbjct: 144 TTQPFAFAVFSDQQSAVGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTRTEDERYGSD 203

Query: 169 KKAKVSIFSRSTPDPGKL 187
           KKAKVSI SRSTPDP  L
Sbjct: 204 KKAKVSIISRSTPDPAGL 221

[Close]

BLAST of Carg00832 vs. TrEMBL
Match: tr|A0A0A0KLD8|A0A0A0KLD8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G491040 PE=4 SV=1)

HSP 1 Score: 255.4 bits (651), Expect = 1.0e-64
Identity = 127/140 (90.71%), Postives = 131/140 (93.57%), Query Frame = 0


Query: 47  LAQHPPTFASYGLPFLPHAASINEVRTLFIAGLPDDVKPREIYNLFREFPGYESSHLRSP 106
           L+QHP TFASY LP LPH  SINEVRTLFIAGLP+DVKPREIYNLFREFPGYESSHLR+P
Sbjct: 43  LSQHPSTFASYALPLLPHTTSINEVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLRTP 102

Query: 107 TQTTQPFAFAVFSDQQSAVGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTRTEDERYG 166
           TQTTQPFAFAVFSDQQSAVGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTRTE+ERYG
Sbjct: 103 TQTTQPFAFAVFSDQQSAVGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTRTEEERYG 162

Query: 167 SDKKAKVSIFSRSTPDPGKL 187
           SDKKAKVSI  RSTPDP  L
Sbjct: 163 SDKKAKVSIIPRSTPDPAGL 182

[Close]

BLAST of Carg00832 vs. TrEMBL
Match: tr|A0A2N9F379|A0A2N9F379_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS13308 PE=4 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 2.7e-49
Identity = 105/138 (76.09%), Postives = 115/138 (83.33%), Query Frame = 0


Query: 47  LAQHPPTFASYGLPFLPHAASINEVRTLFIAGLPDDVKPREIYNLFREFPGYESSHLRSP 106
           LA     + SY  P  P  AS + VRTLFIAGLP+DVKPREIYNLFREFPGYESSHLR+P
Sbjct: 45  LAHPQAPYGSYIAPLFPQ-ASHDAVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLRTP 104

Query: 107 TQTTQPFAFAVFSDQQSAVGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTRTEDERYG 166
           TQTTQ FAFAVF+DQQSA+ AMHA+NGMVFDLEK S LY+DLAKSNSRSKRTRT+DERYG
Sbjct: 105 TQTTQSFAFAVFTDQQSAIVAMHAMNGMVFDLEKGSTLYIDLAKSNSRSKRTRTDDERYG 164

Query: 167 SDKKAKVSIFSRSTPDPG 185
           SDKKA+   FSR TPD G
Sbjct: 165 SDKKARGPAFSRGTPDSG 181

[Close]

BLAST of Carg00832 vs. TrEMBL
Match: tr|A0A2I4EYJ2|A0A2I4EYJ2_9ROSI (U1 small nuclear ribonucleoprotein A isoform X2 OS=Juglans regia OX=51240 GN=LOC108993877 PE=4 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 2.5e-47
Identity = 100/133 (75.19%), Postives = 113/133 (84.96%), Query Frame = 0


Query: 52  PTFASYGLPFLPHAASINEVRTLFIAGLPDDVKPREIYNLFREFPGYESSHLRSPTQTTQ 111
           P + SY  P L   AS +EVRTLF+AGLP+DVK REIYNLFREFPGYESSHLR+PT+T+Q
Sbjct: 57  PPYGSYAPP-LVLQASHDEVRTLFVAGLPEDVKAREIYNLFREFPGYESSHLRTPTETSQ 116

Query: 112 PFAFAVFSDQQSAVGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTRTEDERYGSDKKA 171
           PFAFAVFSDQQSA+ AMH +NGMVFDLEK S LY+DLAKSNSRSKR RT+DER+GSDKKA
Sbjct: 117 PFAFAVFSDQQSAIVAMHGLNGMVFDLEKGSTLYIDLAKSNSRSKRPRTDDERFGSDKKA 176

Query: 172 KVSIFSRSTPDPG 185
           + S F R TPD G
Sbjct: 177 RGSAFPRGTPDSG 188

The following BLAST results are available for this feature:

BLAST of Carg00832 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022949757.1	6.4e-87	100.00	protein WHI4 isoform X2 [Cucurbita moschata]	[more]
XP_022949756.1	1.4e-86	98.92	U1 small nuclear ribonucleoprotein A isoform X1 [Cucurbita moschata]	[more]
XP_023543723.1	1.9e-86	99.46	protein WHI4 isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_023543722.1	4.2e-86	98.39	uncharacterized protein LOC111803516 isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_022977593.1	3.5e-85	98.37	protein WHI4 isoform X1 [Cucurbita maxima]	[more]

BLAST of Carg00832 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G42240.2	1.8e-35	51.79	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G21215.1	7.2e-16	43.81	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G13700.1	3.3e-13	35.97	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G02840.1	9.7e-05	32.14	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

BLAST of Carg00832 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q8VC52\|RBPS2_MOUSE	2.2e-14	43.33	RNA-binding protein with multiple splicing 2 OS=Mus musculus OX=10090 GN=Rbpms2 ...	[more]
sp\|Q6ZRY4\|RBPS2_HUMAN	2.9e-14	43.33	RNA-binding protein with multiple splicing 2 OS=Homo sapiens OX=9606 GN=RBPMS2 P...	[more]
sp\|Q9W6I1\|RBPS2_CHICK	4.9e-14	43.33	RNA-binding protein with multiple splicing 2 OS=Gallus gallus OX=9031 GN=RBPMS2 ...	[more]
sp\|Q9YGP5\|RBPS2_XENLA	4.9e-14	43.33	RNA-binding protein with multiple splicing 2 OS=Xenopus laevis OX=8355 GN=rbpms2...	[more]
sp\|Q93062\|RBPMS_HUMAN	2.4e-13	43.33	RNA-binding protein with multiple splicing OS=Homo sapiens OX=9606 GN=RBPMS PE=1...	[more]

BLAST of Carg00832 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3B1E9\|A0A1S3B1E9_CUCME	3.7e-67	95.59	protein WHI4 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103484791 PE=4 SV=1	[more]
tr\|A0A1S4DUH9\|A0A1S4DUH9_CUCME	1.1e-66	94.20	U1 small nuclear ribonucleoprotein A isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A0A0KLD8\|A0A0A0KLD8_CUCSA	1.0e-64	90.71	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G491040 PE=4 SV=1	[more]
tr\|A0A2N9F379\|A0A2N9F379_FAGSY	2.7e-49	76.09	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS13308 PE=4 SV=1	[more]
tr\|A0A2I4EYJ2\|A0A2I4EYJ2_9ROSI	2.5e-47	75.19	U1 small nuclear ribonucleoprotein A isoform X2 OS=Juglans regia OX=51240 GN=LOC...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding

Vocabulary: **INTERPRO**
Term	Definition
IPR035979	RBD_domain_sf
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR000504	RRM_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg00832-RA	Carg00832-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 73..145 e-value: 1.0E-7 score: 41.6
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 74..137 e-value: 5.4E-10 score: 38.8
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 72..151 score: 12.083
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	G3DSA:3.30.70.330		coord: 66..155 e-value: 1.6E-22 score: 81.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 152..171
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 151..188
None	No IPR available	PANTHER	PTHR45381	FAMILY NOT NAMED	coord: 28..164
None	No IPR available	CDD	cd12420	RRM_RBPMS_like	coord: 72..147 e-value: 1.78985E-29 score: 104.659
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	SSF54928	RNA-binding domain, RBD	coord: 34..158

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg00832	Cla013964	Watermelon (97103) v1	carwmB0407
Carg00832	Csa6G491040	Cucumber (Chinese Long) v2	carcuB0441
Carg00832	ClCG01G016950	Watermelon (Charleston Gray)	carwcgB0397
Carg00832	CSPI06G28270	Wild cucumber (PI 183967)	carcpiB0446
Carg00832	Cucsa.102570	Cucumber (Gy14) v1	carcgyB0467
Carg00832	CmaCh03G009650	Cucurbita maxima (Rimu)	carcmaB0567
Carg00832	CmaCh07G006920	Cucurbita maxima (Rimu)	carcmaB0571
Carg00832	CmoCh03G009840	Cucurbita moschata (Rifu)	carcmoB0551
Carg00832	Lsi01G009630	Bottle gourd (USVL1VR-Ls)	carlsiB364
Carg00832	Cp4.1LG19g11180	Cucurbita pepo (Zucchini)	carcpeB0563
Carg00832	CsGy6G027740	Cucumber (Gy14) v2	carcgybB0418
Carg00832	MELO3C032955.2	Melon (DHL92) v3.6.1	carmedB0418
Carg00832	CsaV3_6G043410	Cucumber (Chinese Long) v3	carcucB0442
Carg00832	Cla97C01G016090	Watermelon (97103) v2	carwmbB0426
Carg00832	Bhi03G000712	Wax gourd	carwgoB0491

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg00832	Watermelon (Charleston Gray)	carwcgB0403
Carg00832	Watermelon (Charleston Gray)	carwcgB0399
Carg00832	Watermelon (97103) v1	carwmB0400
Carg00832	Watermelon (97103) v1	carwmB0404
Carg00832	Watermelon (97103) v2	carwmbB0429
Carg00832	Watermelon (97103) v2	carwmbB0433
Carg00832	Wax gourd	carwgoB0487
Carg00832	Wax gourd	carwgoB0494
Carg00832	Silver-seed gourd	carcarB218
Carg00832	Silver-seed gourd	carcarB401
Carg00832	Silver-seed gourd	carcarB428
Carg00832	Silver-seed gourd	carcarB427
Carg00832	Cucumber (Gy14) v2	carcgybB0409
Carg00832	Cucumber (Gy14) v2	carcgybB0417
Carg00832	Cucumber (Gy14) v1	carcgyB0474
Carg00832	Cucumber (Gy14) v1	carcgyB0475
Carg00832	Cucurbita maxima (Rimu)	carcmaB0555
Carg00832	Cucurbita maxima (Rimu)	carcmaB0557
Carg00832	Cucurbita maxima (Rimu)	carcmaB0563
Carg00832	Cucurbita maxima (Rimu)	carcmaB0570
Carg00832	Cucurbita moschata (Rifu)	carcmoB0542
Carg00832	Cucurbita moschata (Rifu)	carcmoB0545
Carg00832	Cucurbita moschata (Rifu)	carcmoB0548
Carg00832	Cucurbita moschata (Rifu)	carcmoB0553
Carg00832	Cucurbita moschata (Rifu)	carcmoB0554
Carg00832	Cucurbita pepo (Zucchini)	carcpeB0554
Carg00832	Cucurbita pepo (Zucchini)	carcpeB0556
Carg00832	Cucurbita pepo (Zucchini)	carcpeB0567
Carg00832	Cucurbita pepo (Zucchini)	carcpeB0568
Carg00832	Cucurbita pepo (Zucchini)	carcpeB0570
Carg00832	Cucurbita pepo (Zucchini)	carcpeB0573
Carg00832	Wild cucumber (PI 183967)	carcpiB0436
Carg00832	Wild cucumber (PI 183967)	carcpiB0445
Carg00832	Cucumber (Chinese Long) v2	carcuB0431
Carg00832	Cucumber (Chinese Long) v2	carcuB0440
Carg00832	Cucumber (Chinese Long) v3	carcucB0433
Carg00832	Cucumber (Chinese Long) v3	carcucB0441
Carg00832	Bottle gourd (USVL1VR-Ls)	carlsiB365
Carg00832	Bottle gourd (USVL1VR-Ls)	carlsiB372
Carg00832	Melon (DHL92) v3.5.1	carmeB0406
Carg00832	Melon (DHL92) v3.5.1	carmeB0411
Carg00832	Melon (DHL92) v3.5.1	carmeB0414
Carg00832	Melon (DHL92) v3.6.1	carmedB0410
Carg00832	Melon (DHL92) v3.6.1	carmedB0415