Csa6G490010 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa6G490010
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr6 : 23170520 .. 23170765 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTGATTAAGTACGGCAGCCACCGTAGGATTCAATTACTTGAGGAAGTGAAGAAAGAGCCAAGTAGCGTTGAAGGAAAGCTGAAGAAAGATGAACAGCAGGTGCGATGTGGTGAGTGAACGGCTCGAGAGAGAAACAAGAGACGCGATAGTTTTGTATGTGTGCGAACAATTTGCGCGCGTTGGGTCGGAGGGTGTGCACTAATTTGCACGGGAGTTGCTAAAGCTGGACCCTCTTTTGGGTGA

mRNA sequence

ATGCTGATTAAGTACGGCAGCCACCGTAGGATTCAATTACTTGAGGAAGTGAAGAAAGAGCCAAGTAGCGTTGAAGGAAAGCTGAAGAAAGATGAACAGCAGGTGCGATGTGGGTGTGCACTAATTTGCACGGGAGTTGCTAAAGCTGGACCCTCTTTTGGGTGA

Coding sequence (CDS)

ATGCTGATTAAGTACGGCAGCCACCGTAGGATTCAATTACTTGAGGAAGTGAAGAAAGAGCCAAGTAGCGTTGAAGGAAAGCTGAAGAAAGATGAACAGCAGGTGCGATGTGGGTGTGCACTAATTTGCACGGGAGTTGCTAAAGCTGGACCCTCTTTTGGGTGA

Protein sequence

MLIKYGSHRRIQLLEEVKKEPSSVEGKLKKDEQQVRCGCALICTGVAKAGPSFG*
Homology
[Close]
BLAST of Csa6G490010 vs. TrEMBL
Match: A0A0A0KL72_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G490010 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 1.7e-22
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 1 

Query: 1  MLIKYGSHRRIQLLEEVKKEPSSVEGKLKKDEQQVRCGCALICTGVAKAGPSFG 55
          MLIKYGSHRRIQLLEEVKKEPSSVEGKLKKDEQQVRCGCALICTGVAKAGPSFG
Sbjct: 1  MLIKYGSHRRIQLLEEVKKEPSSVEGKLKKDEQQVRCGCALICTGVAKAGPSFG 54

[Close]
BLAST of Csa6G490010 vs. NCBI nr
Match: gi|700193282|gb|KGN48486.1| (hypothetical protein Csa_6G490010 [Cucumis sativus])

HSP 1 Score: 112.5 bits (280), Expect = 2.4e-22
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 1 

Query: 1  MLIKYGSHRRIQLLEEVKKEPSSVEGKLKKDEQQVRCGCALICTGVAKAGPSFG 55
          MLIKYGSHRRIQLLEEVKKEPSSVEGKLKKDEQQVRCGCALICTGVAKAGPSFG
Sbjct: 1  MLIKYGSHRRIQLLEEVKKEPSSVEGKLKKDEQQVRCGCALICTGVAKAGPSFG 54

The following BLAST results are available for this feature:
BLAST of Csa6G490010 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KL72_CUCSA1.7e-22100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G490010 PE=4 SV=1[more]
BLAST of Csa6G490010 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700193282|gb|KGN48486.1|2.4e-22100.00hypothetical protein Csa_6G490010 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU087695cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa6G490010.1Csa6G490010.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU087695CU087695transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa6G490010CSPI06G27720Wild cucumber (PI 183967)cpicuB313
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa6G490010Wax gourdcuwgoB585
Csa6G490010Wax gourdcuwgoB603
Csa6G490010Wax gourdcuwgoB630
Csa6G490010Cucumber (Chinese Long) v2cucuB075
Csa6G490010Cucumber (Chinese Long) v2cucuB076
Csa6G490010Cucumber (Gy14) v1cgycuB121
Csa6G490010Cucumber (Gy14) v1cgycuB134
Csa6G490010Cucumber (Gy14) v1cgycuB329
Csa6G490010Cucurbita maxima (Rimu)cmacuB629
Csa6G490010Cucurbita maxima (Rimu)cmacuB681
Csa6G490010Cucurbita maxima (Rimu)cmacuB809
Csa6G490010Cucurbita maxima (Rimu)cmacuB877
Csa6G490010Cucurbita moschata (Rifu)cmocuB023
Csa6G490010Cucurbita moschata (Rifu)cmocuB475
Csa6G490010Cucurbita moschata (Rifu)cmocuB670
Csa6G490010Cucurbita moschata (Rifu)cmocuB802
Csa6G490010Cucurbita moschata (Rifu)cmocuB865
Csa6G490010Melon (DHL92) v3.5.1cumeB472
Csa6G490010Melon (DHL92) v3.5.1cumeB503
Csa6G490010Watermelon (Charleston Gray)cuwcgB420
Csa6G490010Watermelon (Charleston Gray)cuwcgB432
Csa6G490010Watermelon (Charleston Gray)cuwcgB451
Csa6G490010Watermelon (Charleston Gray)cuwcgB505
Csa6G490010Watermelon (97103) v1cuwmB448
Csa6G490010Watermelon (97103) v1cuwmB464
Csa6G490010Watermelon (97103) v1cuwmB500
Csa6G490010Watermelon (97103) v1cuwmB525
Csa6G490010Cucurbita pepo (Zucchini)cpecuB085
Csa6G490010Cucurbita pepo (Zucchini)cpecuB503
Csa6G490010Cucurbita pepo (Zucchini)cpecuB583
Csa6G490010Cucurbita pepo (Zucchini)cpecuB840
Csa6G490010Bottle gourd (USVL1VR-Ls)culsiB420
Csa6G490010Bottle gourd (USVL1VR-Ls)culsiB434
Csa6G490010Bottle gourd (USVL1VR-Ls)culsiB454
Csa6G490010Cucumber (Gy14) v2cgybcuB083
Csa6G490010Cucumber (Gy14) v2cgybcuB281
Csa6G490010Melon (DHL92) v3.6.1cumedB419
Csa6G490010Melon (DHL92) v3.6.1cumedB454
Csa6G490010Melon (DHL92) v3.6.1cumedB483
Csa6G490010Silver-seed gourdcarcuB0205
Csa6G490010Silver-seed gourdcarcuB0441
Csa6G490010Silver-seed gourdcarcuB0826
Csa6G490010Silver-seed gourdcarcuB0907
Csa6G490010Watermelon (97103) v2cuwmbB412
Csa6G490010Watermelon (97103) v2cuwmbB441
Csa6G490010Watermelon (97103) v2cuwmbB495
Csa6G490010Watermelon (97103) v2cuwmbB512