Csa6G454330 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa6G454330
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr6 : 21723165 .. 21723897 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGACTGTGGCTGAACCCTCTCCCTTCCGGTCAGCTAAGAAATAGCGCCTGCGTCTTCATCGTCGGACTTTCCCTCTTCGCTGCCGGAGCTCACCTCTCTTACCTCAACATAGGCCCTCAGCAAGCTCGAACCAAAGCTCGTTATGATTTTGTCAAAGAGCGTTTGAGGAGGCGTCGCGACGGTTAACCTGCTTCGACTTGTTCCCGGTGAGCATTCAATCTCACCTCATTTTCTCAGAGTTTCAATTTTTCTCTCAGGGATCCATCATATTTGTGGATTATTACAGTAATTTACTAAATCGTTCTTGATTCTTTGGCAATTTGACGAGTTTGTAAAAGGATTGGAATTGTCTTAATCTTGACTTGTTTTCTTTCTTCTATACGAATCGGACGTTTTTTCGTGTCCGTCTTACCGTCCCATCTTTTTAGTTCTCGTTTTCGAGCATAGCGAATTCAATCACTTTCGTTATCGGTGTAGTTCATCTCTGTTTCTCCGTTTCGCGACTTCGCCTTTGGGTTTAATTGTTGAACAACACGATCTCAGTACTTGAAAGCCAATTACTGTATATGATCGACGATCAATTTGTAAGACCTCATTTTCGTAGGAATCCAATTTTGTACACCTAAGATCCTCTGATTTCCCCAATTCAAGAACAGGAGCATGAAATTATGGAGTGGCTTTGATCCCCTAGGTCTCAATTTCTGACCTGGGGGAAGGGCTTCCTTGGTCT

mRNA sequence

ATGGGACTGTGGCTGAACCCTCTCCCTTCCGGTCAGCTAAGAAATAGCGCCTGCGTCTTCATCGTCGGACTTTCCCTCTTCGCTGCCGGAGCTCACCTCTCTTACCTCAACATAGGCCCTCAGCAAGCTCGAACCAAAGCTCGTTATGATTTTGTCAAAGAGCGTTTGAGGAGGCGTCGCGACGGTTAA

Coding sequence (CDS)

ATGGGACTGTGGCTGAACCCTCTCCCTTCCGGTCAGCTAAGAAATAGCGCCTGCGTCTTCATCGTCGGACTTTCCCTCTTCGCTGCCGGAGCTCACCTCTCTTACCTCAACATAGGCCCTCAGCAAGCTCGAACCAAAGCTCGTTATGATTTTGTCAAAGAGCGTTTGAGGAGGCGTCGCGACGGTTAA

Protein sequence

MGLWLNPLPSGQLRNSACVFIVGLSLFAAGAHLSYLNIGPQQARTKARYDFVKERLRRRRDG*

Homology

[Close]

BLAST of Csa6G454330 vs. TrEMBL
Match: A0A0A0KEZ9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G454330 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 2.0e-27
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 1


Query: 1  MGLWLNPLPSGQLRNSACVFIVGLSLFAAGAHLSYLNIGPQQARTKARYDFVKERLRRRR 60
          MGLWLNPLPSGQLRNSACVFIVGLSLFAAGAHLSYLNIGPQQARTKARYDFVKERLRRRR
Sbjct: 1  MGLWLNPLPSGQLRNSACVFIVGLSLFAAGAHLSYLNIGPQQARTKARYDFVKERLRRRR 60

Query: 61 DG 63
          DG
Sbjct: 61 DG 62

[Close]

BLAST of Csa6G454330 vs. TrEMBL
Match: W9QUR3_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_019189 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 5.5e-09
Identity = 34/61 (55.74%), Postives = 41/61 (67.21%), Query Frame = 1


Query: 1  MGLWLNPLPSGQLRNSACVFIVGLSLFAAGAHLSYLNIGPQQARTKARYDFVKERLRRRR 60
          M +W  P    QL  +A  F VG+S FA GA++S+ NI PQQAR KAR DFVKERLR+  
Sbjct: 1  MAMWSYPPTPRQLATTAICFAVGVSFFAVGAYMSFSNIEPQQARVKARRDFVKERLRKLL 60

Query: 61 D 62
          D
Sbjct: 61 D 61

[Close]

BLAST of Csa6G454330 vs. TrEMBL
Match: A0A078E5L2_BRANA (BnaC08g12250D protein OS=Brassica napus GN=BnaC08g12250D PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.2e-08
Identity = 32/54 (59.26%), Postives = 38/54 (70.37%), Query Frame = 1


Query: 7  PLPSGQLRNSACVFIVGLSLFAAGAHLSYLNIGPQQARTKARYDFVKERLRRRR 61
          P   G+L      F  G +LFA G HLSYLN+ PQQARTKAR DFVKERLR+++
Sbjct: 6  PSSPGKLAMKVAFFASGAALFAVGMHLSYLNVAPQQARTKARNDFVKERLRQKQ 59

[Close]

BLAST of Csa6G454330 vs. TrEMBL
Match: A0A0D3DN14_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.2e-08
Identity = 32/54 (59.26%), Postives = 38/54 (70.37%), Query Frame = 1


Query: 7  PLPSGQLRNSACVFIVGLSLFAAGAHLSYLNIGPQQARTKARYDFVKERLRRRR 61
          P   G+L      F  G +LFA G HLSYLN+ PQQARTKAR DFVKERLR+++
Sbjct: 6  PSSPGKLAMKVAFFASGAALFAVGMHLSYLNVAPQQARTKARNDFVKERLRQKQ 59

[Close]

BLAST of Csa6G454330 vs. TrEMBL
Match: M4ECA2_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 2.7e-08
Identity = 32/54 (59.26%), Postives = 39/54 (72.22%), Query Frame = 1


Query: 7  PLPSGQLRNSACVFIVGLSLFAAGAHLSYLNIGPQQARTKARYDFVKERLRRRR 61
          P    +L  +   F  G +LFAAG HLSYLN+ PQQARTKAR DFVKERLR+++
Sbjct: 6  PSSPRKLAMTVAFFASGAALFAAGIHLSYLNVAPQQARTKARNDFVKERLRQKQ 59

[Close]

BLAST of Csa6G454330 vs. TAIR10
Match: AT3G11591.1 (AT3G11591.1 unknown protein)

HSP 1 Score: 57.4 bits (137), Expect = 3.7e-09
Identity = 30/50 (60.00%), Postives = 33/50 (66.00%), Query Frame = 1


Query: 12 QLRNSACVFIVGLSLFAAGAHLSYLNIGPQQARTKARYDFVKERLRRRRD 62
          QL  S   F  G+SLF AGA+LS  NI PQQAR KAR DFVK+R+R+  D
Sbjct: 13 QLVVSVGFFAAGVSLFVAGAYLSLANISPQQARVKARNDFVKDRIRKWLD 62

[Close]

BLAST of Csa6G454330 vs. NCBI nr
Match: gi|778717566|ref|XP_011657716.1| (PREDICTED: uncharacterized protein LOC105435887 [Cucumis sativus])

HSP 1 Score: 129.0 bits (323), Expect = 2.9e-27
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 1


Query: 1  MGLWLNPLPSGQLRNSACVFIVGLSLFAAGAHLSYLNIGPQQARTKARYDFVKERLRRRR 60
          MGLWLNPLPSGQLRNSACVFIVGLSLFAAGAHLSYLNIGPQQARTKARYDFVKERLRRRR
Sbjct: 1  MGLWLNPLPSGQLRNSACVFIVGLSLFAAGAHLSYLNIGPQQARTKARYDFVKERLRRRR 60

Query: 61 DG 63
          DG
Sbjct: 61 DG 62

[Close]

BLAST of Csa6G454330 vs. NCBI nr
Match: gi|659125268|ref|XP_008462599.1| (PREDICTED: uncharacterized protein LOC103500918 [Cucumis melo])

HSP 1 Score: 113.6 bits (283), Expect = 1.2e-22
Identity = 54/62 (87.10%), Postives = 57/62 (91.94%), Query Frame = 1


Query: 1  MGLWLNPLPSGQLRNSACVFIVGLSLFAAGAHLSYLNIGPQQARTKARYDFVKERLRRRR 60
          MGLWLNPLP GQLR SAC FIVG+SLFAAGAHLSYLNIGPQQARTKAR DFV+ERLR+R 
Sbjct: 1  MGLWLNPLPRGQLRTSACFFIVGVSLFAAGAHLSYLNIGPQQARTKARDDFVRERLRKRH 60

Query: 61 DG 63
          DG
Sbjct: 61 DG 62

[Close]

BLAST of Csa6G454330 vs. NCBI nr
Match: gi|1009123983|ref|XP_015878829.1| (PREDICTED: uncharacterized protein LOC107415071 [Ziziphus jujuba])

HSP 1 Score: 74.3 bits (181), Expect = 8.4e-11
Identity = 35/61 (57.38%), Postives = 44/61 (72.13%), Query Frame = 1


Query: 1  MGLWLNPLPSGQLRNSACVFIVGLSLFAAGAHLSYLNIGPQQARTKARYDFVKERLRRRR 60
          M LW  P P GQL+ +A  F+ G+SLFA GAHLS+ NI PQQAR KAR D +K+R+R+  
Sbjct: 1  MVLWSYPPPPGQLKMTAFFFVAGVSLFAIGAHLSFANIAPQQARAKARKDLIKDRIRKLL 60

Query: 61 D 62
          D
Sbjct: 61 D 61

[Close]

BLAST of Csa6G454330 vs. NCBI nr
Match: gi|645277193|ref|XP_008243651.1| (PREDICTED: uncharacterized protein LOC103341874 [Prunus mume])

HSP 1 Score: 69.7 bits (169), Expect = 2.1e-09
Identity = 33/61 (54.10%), Postives = 42/61 (68.85%), Query Frame = 1


Query: 1  MGLWLNPLPSGQLRNSACVFIVGLSLFAAGAHLSYLNIGPQQARTKARYDFVKERLRRRR 60
          M +W  P    QL  +AC F+ G++LFA GAHLS  N+GPQQ R KAR +FVK+RLR+  
Sbjct: 31 MAVWSYPPTPKQLAVTACCFVTGVALFAVGAHLSLANVGPQQDRVKARRNFVKDRLRKLL 90

Query: 61 D 62
          D
Sbjct: 91 D 91

[Close]

BLAST of Csa6G454330 vs. NCBI nr
Match: gi|703089368|ref|XP_010093784.1| (hypothetical protein L484_019189 [Morus notabilis])

HSP 1 Score: 67.8 bits (164), Expect = 7.8e-09
Identity = 34/61 (55.74%), Postives = 41/61 (67.21%), Query Frame = 1


Query: 1  MGLWLNPLPSGQLRNSACVFIVGLSLFAAGAHLSYLNIGPQQARTKARYDFVKERLRRRR 60
          M +W  P    QL  +A  F VG+S FA GA++S+ NI PQQAR KAR DFVKERLR+  
Sbjct: 1  MAMWSYPPTPRQLATTAICFAVGVSFFAVGAYMSFSNIEPQQARVKARRDFVKERLRKLL 60

Query: 61 D 62
          D
Sbjct: 61 D 61

The following BLAST results are available for this feature:

BLAST of Csa6G454330 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KEZ9_CUCSA	2.0e-27	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G454330 PE=4 SV=1	[more]
W9QUR3_9ROSA	5.5e-09	55.74	Uncharacterized protein OS=Morus notabilis GN=L484_019189 PE=4 SV=1	[more]
A0A078E5L2_BRANA	1.2e-08	59.26	BnaC08g12250D protein OS=Brassica napus GN=BnaC08g12250D PE=4 SV=1	[more]
A0A0D3DN14_BRAOL	1.2e-08	59.26	Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1	[more]
M4ECA2_BRARP	2.7e-08	59.26	Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1	[more]

BLAST of Csa6G454330 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G11591.1	3.7e-09	60.00	unknown protein	[more]

BLAST of Csa6G454330 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778717566\|ref\|XP_011657716.1\|	2.9e-27	100.00	PREDICTED: uncharacterized protein LOC105435887 [Cucumis sativus]	[more]
gi\|659125268\|ref\|XP_008462599.1\|	1.2e-22	87.10	PREDICTED: uncharacterized protein LOC103500918 [Cucumis melo]	[more]
gi\|1009123983\|ref\|XP_015878829.1\|	8.4e-11	57.38	PREDICTED: uncharacterized protein LOC107415071 [Ziziphus jujuba]	[more]
gi\|645277193\|ref\|XP_008243651.1\|	2.1e-09	54.10	PREDICTED: uncharacterized protein LOC103341874 [Prunus mume]	[more]
gi\|703089368\|ref\|XP_010093784.1\|	7.8e-09	55.74	hypothetical protein L484_019189 [Morus notabilis]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0008152	metabolic process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0016787	hydrolase activity

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU165039	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa6G454330.1	Csa6G454330.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU165039	CU165039	transcribed_cluster

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa6G454330	Cla018419	Watermelon (97103) v1	cuwmB505
Csa6G454330	MELO3C024568	Melon (DHL92) v3.5.1	cumeB508
Csa6G454330	ClCG04G010260	Watermelon (Charleston Gray)	cuwcgB464
Csa6G454330	Lsi01G012020	Bottle gourd (USVL1VR-Ls)	culsiB435
Csa6G454330	Cla97C04G077100	Watermelon (97103) v2	cuwmbB455
Csa6G454330	Bhi03G001401	Wax gourd	cuwgoB631
Csa6G454330	CSPI06G25690	Wild cucumber (PI 183967)	cpicuB313
Csa6G454330	Cucsa.083620	Cucumber (Gy14) v1	cgycuB082
Csa6G454330	CmaCh07G008360	Cucurbita maxima (Rimu)	cmacuB878
Csa6G454330	CmoCh07G008670	Cucurbita moschata (Rifu)	cmocuB865
Csa6G454330	Cp4.1LG19g05000	Cucurbita pepo (Zucchini)	cpecuB503
Csa6G454330	CsGy6G025240	Cucumber (Gy14) v2	cgybcuB281
Csa6G454330	Carg05347	Silver-seed gourd	carcuB0826

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa6G454330	Bottle gourd (USVL1VR-Ls)	culsiB421
Csa6G454330	Bottle gourd (USVL1VR-Ls)	culsiB445
Csa6G454330	Cucumber (Gy14) v2	cgybcuB137
Csa6G454330	Melon (DHL92) v3.6.1	cumedB464
Csa6G454330	Melon (DHL92) v3.6.1	cumedB487
Csa6G454330	Silver-seed gourd	carcuB0267
Csa6G454330	Silver-seed gourd	carcuB0278
Csa6G454330	Silver-seed gourd	carcuB0943
Csa6G454330	Watermelon (97103) v2	cuwmbB418
Csa6G454330	Watermelon (97103) v2	cuwmbB434
Csa6G454330	Wax gourd	cuwgoB527
Csa6G454330	Cucumber (Chinese Long) v2	cucuB110
Csa6G454330	Cucumber (Gy14) v1	cgycuB346
Csa6G454330	Cucurbita maxima (Rimu)	cmacuB267
Csa6G454330	Cucurbita maxima (Rimu)	cmacuB641
Csa6G454330	Cucurbita maxima (Rimu)	cmacuB681
Csa6G454330	Cucurbita maxima (Rimu)	cmacuB840
Csa6G454330	Cucurbita moschata (Rifu)	cmocuB253
Csa6G454330	Cucurbita moschata (Rifu)	cmocuB630
Csa6G454330	Cucurbita moschata (Rifu)	cmocuB670
Csa6G454330	Cucurbita moschata (Rifu)	cmocuB828
Csa6G454330	Melon (DHL92) v3.5.1	cumeB484
Csa6G454330	Watermelon (Charleston Gray)	cuwcgB424
Csa6G454330	Watermelon (Charleston Gray)	cuwcgB444
Csa6G454330	Watermelon (97103) v1	cuwmB452
Csa6G454330	Watermelon (97103) v1	cuwmB518
Csa6G454330	Cucurbita pepo (Zucchini)	cpecuB085
Csa6G454330	Cucurbita pepo (Zucchini)	cpecuB624
Csa6G454330	Cucurbita pepo (Zucchini)	cpecuB759
Csa6G454330	Cucurbita pepo (Zucchini)	cpecuB876