CmoCh07G008670 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh07G008670
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionBric-a-brac 1
LocationCmo_Chr07 : 4091568 .. 4093902 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGACGGTGGCTGAACCCTCTCCCGCGCGGACAGCTAGGAACTAGCGCCTGCTACTTCGTCGCCGGTTTCTCCTTATTCGCCGTCGGAGCTTACCTCTCTTACGTCAATATCGGCCCTCAGCAAGCTCGAACTAAAGCTCGTAGCGATTTTGTTCGGGAGCGGCTGAGAAGGCGTCACCACGATTAAACTCGATCGATTTCTTCCGGTGAGCGTTCAACCTAATCTCATGTATTTATGTTCAATTTTGTAGTCGAACATCGATATTCTCGATAAAGCTCGTAGCGATTTTGTCAGGGAGCGGCTGAGAAGGCGTCACCACGATTAAACTCGATCGATTTCTTCCGGTGAGCATTCAACCTAACCTCATGTATTTTATGTTCAATTTTGTAGGCGAACCTCGATATTCTTGTGGATTATATCAGAAATTAACTTCTCATTAGGTGAGATTTAATGTTAGGTCGTTCCTGATTCTTTGGCAATTTGAATAGTTTGTAGAAGGATTGGAATTTCCTTTGTCTGTTGAGTTGTTTTCTTTATTCTCTACGAATCGGATGATTTTACGAGTCTGTCTCCGTTTTCCGTGCGGTTTTTGAACTCATTGTTCTCGAACAGCGACTGAAAGCACTTTCTTTATCCGTGTAGTTCTTCTCTGTTTCTCGAATTGTGGCCTTTAGATTTAATTGTTGAAGGACGCAACCTCACTAATTCGGAACCAATTATAATTTATGTTCGACGATGAATTTGAAAGACCTCATTCCGTAGGGATCCAATTTCGTGCACCTAATATCCTCTGATTCCCTCCCCCCTCTAAGAACGGAAGCATGAAATCGTGGAGCGACTTTGATCCCCTGGCTCTTACTCTATCGCTGGGTACGAACTCCATAGCCCATAGGTATTATTGAGGCGATAAGTAATACCTTTCTTCCCTTTCACCTTGTATCCTTGTGTTAGCTCCACTTTCATTTTTTCCATTTCGCCATTTAAGGAATCAAGCCAGGCCACCAAGTTGAAACAAATTTCATCGCAATTAAACTACCAAGACGAGTACAGTTCTTGCAATCTGTCTCATTAAGATCTACACCAGGTTGTTGAGATTAGTCCTTTTCAACTAATGGAGCTTTAAGCTTCTGAATAAAATTGGTTCTTTGTATATAGTCTTGTAAATCCATTTTAAGCCAATTGCATCTTTTCTTGAAGTAGATTTTGAAGCTCTTATATTTTATTTCTTTCAATGTTGTCAATTTCTTCCTCTATAGCTTTCAATTTGAATTTCTTTTTCTACACCTTCAAAATTTTGTGATTCGCAAGTGAACGTGATTGCATTACAAATACAATTAGAACAAGTTTACTCAGATACCTGATAATGTTTCAGTAACCTTCCTCTGCTTGTTTTTGAATGAAAGGGAGGTTTGCTTGTTTCTGCTAATATGTTATCTAACCTAAGTAGAGAATGACGGTTAGAATGTAGGTAGAGTTCATTAGTGAGATCTCATGTCGGTTGGAGAGGGGAACAAACCATTCTTTATAAGGGTGTGGAAACCTCTCCCTAGTAGACGTGTTCTAAAACCTTGAGGGGAGGCCCTTGAAGGGAATGCCCAAAGAGGACAATATCTTCTAGCGGTGGACTTGGGCTGTTACAAATGGTATCAGATCCAGACACCGGGTAGTGTGCCAACGAGGACGCTGGTCTCCAAGGGGGGTGGATTGTGAGATCCCACATCGGTTGGAGAGGGGAACGAAGCATTCCTTATAAGGGTGTGGAAACCTCTCCCTAGTAGACGCATTCTAAAACTCTGAGGGAATGCCCAAAGAGGACAATATCTTCTAGCGGTGGATTTGGGCTGTTACAATTAGTGATTAAATGAGCCTTCTGTTTGTATAGATCAAACTGAACACGAGAATATTTAAGAAGTAGAAAAGACTGGACTCACGAAACTTCAAATGGGATGAAACATGTTTCTAGTTGAGATCGTATGCATTTCTTGAAATTTTGTCTCTTTTCATTTGGTTTCTTTTGGTTGTATTAATTTTTTCAGCTCAATAAAGATTGCTCAAGCTCGGAGAACACAAGTACGAGCTTTGATGATGGAATGAAAGGAACAAAAGTATAGAGGTTGGTACTGAAGTTTCAGAGCGCTTAGACATTATGAATTTCTGGGCACTACAACATAACTATAGCTTATCTTCAGGTTATATTTAGTTGATTCTGATGGATTTTGGTAAAACTTCTGATATTAGCAGTGATGTTGTAATGACCCAACTTTTTTATACTCTAGTCGAGATCATTACCTACGAGATAACAAATTTACCATTTAAAATAAATGAAGAATAG

mRNA sequence

ATGGGACGGTGGCTGAACCCTCTCCCGCGCGGACAGCTAGGAACTAGCGCCTGCTACTTCGTCGCCGGTTTCTCCTTATTCGCCGTCGGAGCTTACCTCTCTTACGTCAATATCGGCCCTCAGCAAGCTCGAACTAAAGCTCGTAGCGATTTTGTTCGGGAGCGGCTGAGAAGGCGCGTCACCACGATTAAACTCGATCGATTTCTTCCGCTCAATAAAGATTGCTCAAGCTCGGAGAACACAAGTACGAGCTTTGATGATGGAATGAAAGGAACAAAATTGATTCTGATGGATTTTGGTAAAACTTCTGATATTAGCAGTGATGTTGTAATGACCCAACTTTTTTATACTCTAGTCGAGATCATTACCTACGAGATAACAAATTTACCATTTAAAATAAATGAAGAATAG

Coding sequence (CDS)

ATGGGACGGTGGCTGAACCCTCTCCCGCGCGGACAGCTAGGAACTAGCGCCTGCTACTTCGTCGCCGGTTTCTCCTTATTCGCCGTCGGAGCTTACCTCTCTTACGTCAATATCGGCCCTCAGCAAGCTCGAACTAAAGCTCGTAGCGATTTTGTTCGGGAGCGGCTGAGAAGGCGCGTCACCACGATTAAACTCGATCGATTTCTTCCGCTCAATAAAGATTGCTCAAGCTCGGAGAACACAAGTACGAGCTTTGATGATGGAATGAAAGGAACAAAATTGATTCTGATGGATTTTGGTAAAACTTCTGATATTAGCAGTGATGTTGTAATGACCCAACTTTTTTATACTCTAGTCGAGATCATTACCTACGAGATAACAAATTTACCATTTAAAATAAATGAAGAATAG
Homology
[Close]
BLAST of CmoCh07G008670 vs. TrEMBL
Match: A0A0A0KEZ9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G454330 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.1e-17
Identity = 46/59 (77.97%), Postives = 50/59 (84.75%), Query Frame = 1 

Query: 1  MGRWLNPLPRGQLGTSACYFVAGFSLFAVGAYLSYVNIGPQQARTKARSDFVRERLRRR 60
          MG WLNPLP GQL  SAC F+ G SLFA GA+LSY+NIGPQQARTKAR DFV+ERLRRR
Sbjct: 1  MGLWLNPLPSGQLRNSACVFIVGLSLFAAGAHLSYLNIGPQQARTKARYDFVKERLRRR 59

[Close]
BLAST of CmoCh07G008670 vs. TrEMBL
Match: W9QUR3_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_019189 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 9.0e-09
Identity = 34/58 (58.62%), Postives = 39/58 (67.24%), Query Frame = 1 

Query: 1  MGRWLNPLPRGQLGTSACYFVAGFSLFAVGAYLSYVNIGPQQARTKARSDFVRERLRR 59
          M  W  P    QL T+A  F  G S FAVGAY+S+ NI PQQAR KAR DFV+ERLR+
Sbjct: 1  MAMWSYPPTPRQLATTAICFAVGVSFFAVGAYMSFSNIEPQQARVKARRDFVKERLRK 58

[Close]
BLAST of CmoCh07G008670 vs. TrEMBL
Match: A0A0D3DN14_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.6e-08
Identity = 30/53 (56.60%), Postives = 41/53 (77.36%), Query Frame = 1 

Query: 7  PLPRGQLGTSACYFVAGFSLFAVGAYLSYVNIGPQQARTKARSDFVRERLRRR 60
          P   G+L     +F +G +LFAVG +LSY+N+ PQQARTKAR+DFV+ERLR++
Sbjct: 6  PSSPGKLAMKVAFFASGAALFAVGMHLSYLNVAPQQARTKARNDFVKERLRQK 58

[Close]
BLAST of CmoCh07G008670 vs. TrEMBL
Match: A0A078E5L2_BRANA (BnaC08g12250D protein OS=Brassica napus GN=BnaC08g12250D PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.6e-08
Identity = 30/53 (56.60%), Postives = 41/53 (77.36%), Query Frame = 1 

Query: 7  PLPRGQLGTSACYFVAGFSLFAVGAYLSYVNIGPQQARTKARSDFVRERLRRR 60
          P   G+L     +F +G +LFAVG +LSY+N+ PQQARTKAR+DFV+ERLR++
Sbjct: 6  PSSPGKLAMKVAFFASGAALFAVGMHLSYLNVAPQQARTKARNDFVKERLRQK 58

[Close]
BLAST of CmoCh07G008670 vs. TrEMBL
Match: V4UT58_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10010136mg PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 3.4e-08
Identity = 31/48 (64.58%), Postives = 40/48 (83.33%), Query Frame = 1 

Query: 12 QLGTSACYFVAGFSLFAVGAYLSYVNIGPQQARTKARSDFVRERLRRR 60
          +L  +  YF+AG +LFAVG +LSYVN+ PQQAR KAR+DFVRERLR++
Sbjct: 12 KLAMTVGYFIAGAALFAVGLHLSYVNVAPQQARIKARNDFVRERLRKK 59

[Close]
BLAST of CmoCh07G008670 vs. TAIR10
Match: AT3G11591.1 (AT3G11591.1 unknown protein)

HSP 1 Score: 63.5 bits (153), Expect = 1.1e-10
Identity = 31/52 (59.62%), Postives = 37/52 (71.15%), Query Frame = 1 

Query: 7  PLPRGQLGTSACYFVAGFSLFAVGAYLSYVNIGPQQARTKARSDFVRERLRR 59
          P  R QL  S  +F AG SLF  GAYLS  NI PQQAR KAR+DFV++R+R+
Sbjct: 8  PPTRRQLVVSVGFFAAGVSLFVAGAYLSLANISPQQARVKARNDFVKDRIRK 59

[Close]
BLAST of CmoCh07G008670 vs. NCBI nr
Match: gi|659125268|ref|XP_008462599.1| (PREDICTED: uncharacterized protein LOC103500918 [Cucumis melo])

HSP 1 Score: 104.0 bits (258), Expect = 2.1e-19
Identity = 48/59 (81.36%), Postives = 53/59 (89.83%), Query Frame = 1 

Query: 1  MGRWLNPLPRGQLGTSACYFVAGFSLFAVGAYLSYVNIGPQQARTKARSDFVRERLRRR 60
          MG WLNPLPRGQL TSAC+F+ G SLFA GA+LSY+NIGPQQARTKAR DFVRERLR+R
Sbjct: 1  MGLWLNPLPRGQLRTSACFFIVGVSLFAAGAHLSYLNIGPQQARTKARDDFVRERLRKR 59

[Close]
BLAST of CmoCh07G008670 vs. NCBI nr
Match: gi|778717566|ref|XP_011657716.1| (PREDICTED: uncharacterized protein LOC105435887 [Cucumis sativus])

HSP 1 Score: 97.8 bits (242), Expect = 1.5e-17
Identity = 46/59 (77.97%), Postives = 50/59 (84.75%), Query Frame = 1 

Query: 1  MGRWLNPLPRGQLGTSACYFVAGFSLFAVGAYLSYVNIGPQQARTKARSDFVRERLRRR 60
          MG WLNPLP GQL  SAC F+ G SLFA GA+LSY+NIGPQQARTKAR DFV+ERLRRR
Sbjct: 1  MGLWLNPLPSGQLRNSACVFIVGLSLFAAGAHLSYLNIGPQQARTKARYDFVKERLRRR 59

[Close]
BLAST of CmoCh07G008670 vs. NCBI nr
Match: gi|1009123983|ref|XP_015878829.1| (PREDICTED: uncharacterized protein LOC107415071 [Ziziphus jujuba])

HSP 1 Score: 71.2 bits (173), Expect = 1.5e-09
Identity = 32/55 (58.18%), Postives = 42/55 (76.36%), Query Frame = 1 

Query: 4  WLNPLPRGQLGTSACYFVAGFSLFAVGAYLSYVNIGPQQARTKARSDFVRERLRR 59
          W  P P GQL  +A +FVAG SLFA+GA+LS+ NI PQQAR KAR D +++R+R+
Sbjct: 4  WSYPPPPGQLKMTAFFFVAGVSLFAIGAHLSFANIAPQQARAKARKDLIKDRIRK 58

[Close]
BLAST of CmoCh07G008670 vs. NCBI nr
Match: gi|703089368|ref|XP_010093784.1| (hypothetical protein L484_019189 [Morus notabilis])

HSP 1 Score: 68.2 bits (165), Expect = 1.3e-08
Identity = 34/58 (58.62%), Postives = 39/58 (67.24%), Query Frame = 1 

Query: 1  MGRWLNPLPRGQLGTSACYFVAGFSLFAVGAYLSYVNIGPQQARTKARSDFVRERLRR 59
          M  W  P    QL T+A  F  G S FAVGAY+S+ NI PQQAR KAR DFV+ERLR+
Sbjct: 1  MAMWSYPPTPRQLATTAICFAVGVSFFAVGAYMSFSNIEPQQARVKARRDFVKERLRK 58

[Close]
BLAST of CmoCh07G008670 vs. NCBI nr
Match: gi|568856268|ref|XP_006481708.1| (PREDICTED: uncharacterized protein LOC102630771 [Citrus sinensis])

HSP 1 Score: 67.8 bits (164), Expect = 1.7e-08
Identity = 32/55 (58.18%), Postives = 37/55 (67.27%), Query Frame = 1 

Query: 4  WLNPLPRGQLGTSACYFVAGFSLFAVGAYLSYVNIGPQQARTKARSDFVRERLRR 59
          W  P  R QL  S  +F+ G SLF  GAYLS VN+ PQQAR KAR DFV+ RLR+
Sbjct: 4  WSYPPTRKQLAMSIAFFITGVSLFTAGAYLSLVNVAPQQARAKARKDFVKARLRK 58

The following BLAST results are available for this feature:
BLAST of CmoCh07G008670 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh07G008670 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KEZ9_CUCSA1.1e-1777.97Uncharacterized protein OS=Cucumis sativus GN=Csa_6G454330 PE=4 SV=1[more]
W9QUR3_9ROSA9.0e-0958.62Uncharacterized protein OS=Morus notabilis GN=L484_019189 PE=4 SV=1[more]
A0A0D3DN14_BRAOL2.6e-0856.60Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1[more]
A0A078E5L2_BRANA2.6e-0856.60BnaC08g12250D protein OS=Brassica napus GN=BnaC08g12250D PE=4 SV=1[more]
V4UT58_9ROSI3.4e-0864.58Uncharacterized protein OS=Citrus clementina GN=CICLE_v10010136mg PE=4 SV=1[more]
BLAST of CmoCh07G008670 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G11591.11.1e-1059.62 unknown protein[more]
BLAST of CmoCh07G008670 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659125268|ref|XP_008462599.1|2.1e-1981.36PREDICTED: uncharacterized protein LOC103500918 [Cucumis melo][more]
gi|778717566|ref|XP_011657716.1|1.5e-1777.97PREDICTED: uncharacterized protein LOC105435887 [Cucumis sativus][more]
gi|1009123983|ref|XP_015878829.1|1.5e-0958.18PREDICTED: uncharacterized protein LOC107415071 [Ziziphus jujuba][more]
gi|703089368|ref|XP_010093784.1|1.3e-0858.62hypothetical protein L484_019189 [Morus notabilis][more]
gi|568856268|ref|XP_006481708.1|1.7e-0858.18PREDICTED: uncharacterized protein LOC102630771 [Citrus sinensis][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh07G008670.1CmoCh07G008670.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh07G008670Cucsa.083620Cucumber (Gy14) v1cgycmoB0150
CmoCh07G008670CmaCh07G008360Cucurbita maxima (Rimu)cmacmoB875
CmoCh07G008670Cla018419Watermelon (97103) v1cmowmB825
CmoCh07G008670Csa6G454330Cucumber (Chinese Long) v2cmocuB865
CmoCh07G008670MELO3C024568Melon (DHL92) v3.5.1cmomeB783
CmoCh07G008670ClCG04G010260Watermelon (Charleston Gray)cmowcgB769
CmoCh07G008670CSPI06G25690Wild cucumber (PI 183967)cmocpiB874
CmoCh07G008670Lsi01G012020Bottle gourd (USVL1VR-Ls)cmolsiB774
CmoCh07G008670CsaV3_6G040900Cucumber (Chinese Long) v3cmocucB1020
CmoCh07G008670Cla97C04G077100Watermelon (97103) v2cmowmbB867
CmoCh07G008670Bhi03G001401Wax gourdcmowgoB1055
CmoCh07G008670CsGy6G025240Cucumber (Gy14) v2cgybcmoB843
CmoCh07G008670Carg05347Silver-seed gourdcarcmoB1100
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh07G008670Cucumber (Chinese Long) v3cmocucB0997
CmoCh07G008670Watermelon (97103) v2cmowmbB851
CmoCh07G008670Watermelon (97103) v2cmowmbB854
CmoCh07G008670Wax gourdcmowgoB1041
CmoCh07G008670Cucurbita moschata (Rifu)cmocmoB228
CmoCh07G008670Cucurbita moschata (Rifu)cmocmoB443
CmoCh07G008670Cucurbita moschata (Rifu)cmocmoB455
CmoCh07G008670Cucurbita moschata (Rifu)cmocmoB483
CmoCh07G008670Cucumber (Gy14) v1cgycmoB0683
CmoCh07G008670Cucurbita maxima (Rimu)cmacmoB275
CmoCh07G008670Cucurbita maxima (Rimu)cmacmoB628
CmoCh07G008670Cucurbita maxima (Rimu)cmacmoB667
CmoCh07G008670Cucurbita maxima (Rimu)cmacmoB836
CmoCh07G008670Wild cucumber (PI 183967)cmocpiB854
CmoCh07G008670Cucumber (Chinese Long) v2cmocuB844
CmoCh07G008670Melon (DHL92) v3.5.1cmomeB777
CmoCh07G008670Watermelon (Charleston Gray)cmowcgB753
CmoCh07G008670Watermelon (Charleston Gray)cmowcgB758
CmoCh07G008670Watermelon (97103) v1cmowmB804
CmoCh07G008670Watermelon (97103) v1cmowmB832
CmoCh07G008670Cucurbita pepo (Zucchini)cmocpeB821
CmoCh07G008670Cucurbita pepo (Zucchini)cmocpeB806
CmoCh07G008670Cucurbita pepo (Zucchini)cmocpeB817
CmoCh07G008670Cucurbita pepo (Zucchini)cmocpeB831
CmoCh07G008670Bottle gourd (USVL1VR-Ls)cmolsiB772
CmoCh07G008670Bottle gourd (USVL1VR-Ls)cmolsiB787
CmoCh07G008670Cucumber (Gy14) v2cgybcmoB419
CmoCh07G008670Melon (DHL92) v3.6.1cmomedB881
CmoCh07G008670Melon (DHL92) v3.6.1cmomedB889
CmoCh07G008670Silver-seed gourdcarcmoB0338
CmoCh07G008670Silver-seed gourdcarcmoB0352
CmoCh07G008670Silver-seed gourdcarcmoB0836
CmoCh07G008670Silver-seed gourdcarcmoB1242