Csa6G454320 (gene) Cucumber (Chinese Long) v2
The following sequences are available for this feature:
Legend: CDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGGATCTCCAAACTGAATTTCATCATCAGAGACCCTTTCTTTTTCTTTCTTTCCCCATTAGCAAACCTCTCTGTTTTGCGCTTTCTTTTCTAATCCTCTCTGTTTCTTCTCTTTTCATATTCAACTTCTCCGCCACCCCTTTCAATTACCAATATTATGATCTTTCACGTTTCCATCACTTTTTCTTTCAATTTTTTCCCCAAAACAACCCGATTCCATCACCGTCCCCGTCCCCGTCGCCTTCATTGCCGATACCTTGCGATTACTCCTATGGCAAATGGGTTTGGGATGAAAATTATCCATTCCACTCTTACACTGAGAATTGTCCCTTTGTTGATCCAGGATTCCGGTGTACCCAAAATGGCCGGAAAGATGAAGGTTACCGGAAGTGGCGGTGGCAACCTGAAGGTTGCAATCTCCCAAGGTATGAATTATATTTGGTTATAAGCTTCTTGTTCTTGAAGTTCTTGCATGGATTTTTCACCCTCCTTTTATACGATTCTTTTATAACCCTTTAGGAAATTGTCTGAAATAGCAACCAAACAAAAACAAAAAAACATAATCGGCAATCTATAAAATCTCGATAGTTGATCTCGAACGATATGTACTAAACAAATTGGTATAATAATAAGTTTTTTTTTAAAAAAAGTAAAAATTTGGAGTAAACCTTCAAATTCATTTGGGAGTATGGACACTTTTTTTTGTCTTTTACGGTCTAGATTTTAGTAAATGCTATTAATTATGGCTTGGAAATATTTAGAAATACATATAATTGGACAAATAAGTTAGGGAAAGCTATTTCTTTTTCTCCATCTCTTTCCAAAATAATGAAGAAGAGTTGAGGAACCAAAAAGGGTAATTTTGTGGGAGCTTACCAAATAATTGGATGAATATGGAATATCTAGATTTTCTGGTGTGATTTTCAAGAGAGATTCAAATGGATTGTTTTCCAGAAAGTTGGAACATAATGAGGTGTTGGATTTCAACAAAAATGTAATTGTAAAATGTAAAAACTACGTAAATAATGGATTTTTAAAAACAATTCAAACATAATTTTTTTTATATTACATTACTTTCCATTCCAAAGCAATTGTGGATGTCTAAACACCCTCTCTAAAGGTCTTGATCAATTAACAATTTATTTTTTACTTGTTAGTTTTTTCATAATTTTTTATTGGACTTGATTTTCATTGTTTGCCAAATTTCTATGAATTAATTTTCTTTTTTTTATATATGTGATTGCGAATGTTCAAGTTGGCATATATATATATATATATATATGCACGTATGCCCATGTTTGTAGGCATGTATGTCATTTAATCTGACTAATCATTTTAACCAATAATTTAAAAATAAAAAATTGTATAAGATATTAACATTGTAGGTGGTTGACTTTCATAATATTGTTAGAAATCATCTTAATGTCTTAAGCTAAAATTTGAAACCTACAAGAGAAAAGACAAACATGCCATTACACAATGTATAAATTAATTTAATTTAAAAAATGTTAGAGGTTTATTAAGCCATCTGAATTATCATTATAATAATTATTATTACTATCTTTTCATATATGCTTGTTGGCTTAATTGTTTTTCAGACTAATCATCTTAATCAATAATCCTAAAATTTTAAATTCTTATAAAATATTTGTATTCTAGATGGTCACACTGTCATGATTTGAACTCGACTTTGAAAGTATCTAAATTTATTGCTATTATCTTCATCCACAACCTTAGATTCAATGCAAGTGAGTTATTAGAGAGAAGTCGAAACGGAAGGATCGTGTTTGTTGGCGATTCAATCGGACGAAACCAATGGGAGTCGCTACTATGCATGCTCACGCAGGGAGTTTCAAACATTTCAACAATATATGAAGAAAATGGGAAGCCAATAAACAAACACAAAGGATTTCTCACCATGCGATTTCAGGAATTCAATCTTACAGTTGAATATTATAGAGTTCCTTTTCTAGTCGTCAATGGTCGACCTCCTCCAAACTCATCAACTCAAGTCAATGCTAGCATTCGAGTTGATGAGTTGCATTGGTATTCCAAACAATGGGTTGGTGCCGATGTCTTAGTTTTCAATGATGGTCACTGGTGGAATAAGCACAAGACCCTTAAAATGTAAGAGTTTCCTAATCTAAAAATGCTTTTCAGCCTAATTTTCCAAAACCAATCAAATAACAACTTTACTTGGAACACGTTTTTAACGGCGTTTGAAGTGTTCTAAATAAAAAAGTATATATTTTCAAACACTTGAAAGAAGATAATCATAACGAGTTTCAACTTGGAGGTAGATATTTGATCAGACTACTACATCAAGTTAACTCAAGGACTTGTAGACCTACCTTTCTAGTCATAAATGGGAAAAGAAAAAGTAACATCCATTTTTGTTTCAGGGGTTACTATTTCCAAGAGGGGGGGAAGTTGAATATGAGCATGGATGTAATGGAAGCATTTCGGAGGTCACTACAGACATGGAAGCGATGGGTGGAAGAAGAATTGGATCCAAACAGAACTCATGTTTTCTTTCGCAGCTATTCCCCTGTTCATTACAGGTAAGTTAAGTTATATATTGTCATGCAACCTACTGTTGTTCATGATAAGACCAGATGAATGAATTTTGTTCATGGTTAGTAGCTTTATGAAACAAGCTTTTGACGTAGAAACTTGCAGGGGTGGGACATGGAGTGAAGGTGGTCACTGTAACACTGACAAAGAGCCCGAAAGAGACTACACGAAACTGGAGGACGAACCAGAAAACAACATTTTCATTTCAAATGTAATCAAACAAATGGATTCCGTAAAGTATAAAATTCAGTTCTTGAATATTACATATCTAACAGAATTCAGAAAGGATGGTCACCCTTCAAAGAATCGTGAGCCCGGCACACCTGATGACGCTCCACAAGATTGTAGTCACTGGTGCCTGCCTGGAGTACCAGATACGTGGAATGAACTTGTTTATGCTCATCTATTATCAAATGGATTCAGAAAGTAGTGCTAAGTATGTCAAAAAGAAAAGTAACTAACCTCGTGTTTAGAACTCTAGTTCC ATGGATCTCCAAACTGAATTTCATCATCAGAGACCCTTTCTTTTTCTTTCTTTCCCCATTAGCAAACCTCTCTGTTTTGCGCTTTCTTTTCTAATCCTCTCTGTTTCTTCTCTTTTCATATTCAACTTCTCCGCCACCCCTTTCAATTACCAATATTATGATCTTTCACGTTTCCATCACTTTTTCTTTCAATTTTTTCCCCAAAACAACCCGATTCCATCACCGTCCCCGTCCCCGTCGCCTTCATTGCCGATACCTTGCGATTACTCCTATGGCAAATGGGTTTGGGATGAAAATTATCCATTCCACTCTTACACTGAGAATTGTCCCTTTGTTGATCCAGGATTCCGGTGTACCCAAAATGGCCGGAAAGATGAAGGTTACCGGAAGTGGCGGTGGCAACCTGAAGGTTGCAATCTCCCAAGGGGTTACTATTTCCAAGAGGGGGGGAAGTTGAATATGAGCATGGATGTAATGGAAGCATTTCGGAGGTCACTACAGACATGGAAGCGATGGGTGGAAGAAGAATTGGATCCAAACAGAACTCATGTTTTCTTTCGCAGCTATTCCCCTGTTCATTACAGGGGTGGGACATGGAGTGAAGGTGGTCACTGTAACACTGACAAAGAGCCCGAAAGAGACTACACGAAACTGGAGGACGAACCAGAAAACAACATTTTCATTTCAAATGTAATCAAACAAATGGATTCCGTAAAGTATAAAATTCAGTTCTTGAATATTACATATCTAACAGAATTCAGAAAGGATGGTCACCCTTCAAAGAATCGTGAGCCCGGCACACCTGATGACGCTCCACAAGATTGTAGTCACTGGTGCCTGCCTGGAGTACCAGATACGTGGAATGAACTTGTTTATGCTCATCTATTATCAAATGGATTCAGAAAGTAG ATGGATCTCCAAACTGAATTTCATCATCAGAGACCCTTTCTTTTTCTTTCTTTCCCCATTAGCAAACCTCTCTGTTTTGCGCTTTCTTTTCTAATCCTCTCTGTTTCTTCTCTTTTCATATTCAACTTCTCCGCCACCCCTTTCAATTACCAATATTATGATCTTTCACGTTTCCATCACTTTTTCTTTCAATTTTTTCCCCAAAACAACCCGATTCCATCACCGTCCCCGTCCCCGTCGCCTTCATTGCCGATACCTTGCGATTACTCCTATGGCAAATGGGTTTGGGATGAAAATTATCCATTCCACTCTTACACTGAGAATTGTCCCTTTGTTGATCCAGGATTCCGGTGTACCCAAAATGGCCGGAAAGATGAAGGTTACCGGAAGTGGCGGTGGCAACCTGAAGGTTGCAATCTCCCAAGGGGTTACTATTTCCAAGAGGGGGGGAAGTTGAATATGAGCATGGATGTAATGGAAGCATTTCGGAGGTCACTACAGACATGGAAGCGATGGGTGGAAGAAGAATTGGATCCAAACAGAACTCATGTTTTCTTTCGCAGCTATTCCCCTGTTCATTACAGGGGTGGGACATGGAGTGAAGGTGGTCACTGTAACACTGACAAAGAGCCCGAAAGAGACTACACGAAACTGGAGGACGAACCAGAAAACAACATTTTCATTTCAAATGTAATCAAACAAATGGATTCCGTAAAGTATAAAATTCAGTTCTTGAATATTACATATCTAACAGAATTCAGAAAGGATGGTCACCCTTCAAAGAATCGTGAGCCCGGCACACCTGATGACGCTCCACAAGATTGTAGTCACTGGTGCCTGCCTGGAGTACCAGATACGTGGAATGAACTTGTTTATGCTCATCTATTATCAAATGGATTCAGAAAGTAG MDLQTEFHHQRPFLFLSFPISKPLCFALSFLILSVSSLFIFNFSATPFNYQYYDLSRFHHFFFQFFPQNNPIPSPSPSPSPSLPIPCDYSYGKWVWDENYPFHSYTENCPFVDPGFRCTQNGRKDEGYRKWRWQPEGCNLPRGYYFQEGGKLNMSMDVMEAFRRSLQTWKRWVEEELDPNRTHVFFRSYSPVHYRGGTWSEGGHCNTDKEPERDYTKLEDEPENNIFISNVIKQMDSVKYKIQFLNITYLTEFRKDGHPSKNREPGTPDDAPQDCSHWCLPGVPDTWNELVYAHLLSNGFRK*
BLAST of Csa6G454320 vs. Swiss-Prot
Match: TBL8_ARATH (Protein trichome birefringence-like 8 OS=Arabidopsis thaliana GN=TBL8 PE=2 SV=1) HSP 1 Score: 238.4 bits (607), Expect = 1.0e-61 Identity = 107/169 (63.31%), Postives = 127/169 (75.15%), Query Frame = 1
HSP 2 Score: 84.3 bits (207), Expect = 2.4e-15 Identity = 35/58 (60.34%), Postives = 39/58 (67.24%), Query Frame = 1
BLAST of Csa6G454320 vs. Swiss-Prot
Match: TBL9_ARATH (Protein trichome birefringence-like 9 OS=Arabidopsis thaliana GN=TBL9 PE=2 SV=1) HSP 1 Score: 222.2 bits (565), Expect = 7.5e-57 Identity = 102/174 (58.62%), Postives = 126/174 (72.41%), Query Frame = 1
HSP 2 Score: 78.2 bits (191), Expect = 1.7e-13 Identity = 37/72 (51.39%), Postives = 42/72 (58.33%), Query Frame = 1
BLAST of Csa6G454320 vs. Swiss-Prot
Match: TBR_ARATH (Protein trichome birefringence OS=Arabidopsis thaliana GN=TBR PE=1 SV=1) HSP 1 Score: 153.7 bits (387), Expect = 3.3e-36 Identity = 71/158 (44.94%), Postives = 100/158 (63.29%), Query Frame = 1
HSP 2 Score: 58.2 bits (139), Expect = 1.9e-07 Identity = 21/56 (37.50%), Postives = 35/56 (62.50%), Query Frame = 1
BLAST of Csa6G454320 vs. Swiss-Prot
Match: TBL5_ARATH (Protein trichome birefringence-like 5 OS=Arabidopsis thaliana GN=TBL5 PE=2 SV=1) HSP 1 Score: 152.1 bits (383), Expect = 9.5e-36 Identity = 74/189 (39.15%), Postives = 101/189 (53.44%), Query Frame = 1
HSP 2 Score: 68.6 bits (166), Expect = 1.4e-10 Identity = 28/57 (49.12%), Postives = 35/57 (61.40%), Query Frame = 1
BLAST of Csa6G454320 vs. Swiss-Prot
Match: TBL1_ARATH (Protein trichome birefringence-like 1 OS=Arabidopsis thaliana GN=TBL1 PE=2 SV=1) HSP 1 Score: 150.6 bits (379), Expect = 2.8e-35 Identity = 72/158 (45.57%), Postives = 99/158 (62.66%), Query Frame = 1
HSP 2 Score: 58.9 bits (141), Expect = 1.1e-07 Identity = 26/66 (39.39%), Postives = 37/66 (56.06%), Query Frame = 1
BLAST of Csa6G454320 vs. TrEMBL
Match: A0A0A0KHJ0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G454320 PE=4 SV=1) HSP 1 Score: 668.3 bits (1723), Expect = 4.4e-189 Identity = 302/302 (100.00%), Postives = 302/302 (100.00%), Query Frame = 1
BLAST of Csa6G454320 vs. TrEMBL
Match: V4UUM4_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10013764mg PE=4 SV=1) HSP 1 Score: 253.4 bits (646), Expect = 3.4e-64 Identity = 114/169 (67.46%), Postives = 138/169 (81.66%), Query Frame = 1
BLAST of Csa6G454320 vs. TrEMBL
Match: V4UUM4_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10013764mg PE=4 SV=1) HSP 1 Score: 110.5 bits (275), Expect = 3.5e-21 Identity = 48/82 (58.54%), Postives = 58/82 (70.73%), Query Frame = 1
HSP 2 Score: 251.1 bits (640), Expect = 1.7e-63 Identity = 112/169 (66.27%), Postives = 136/169 (80.47%), Query Frame = 1
BLAST of Csa6G454320 vs. TrEMBL
Match: A0A061EUN4_THECC (Trichome birefringence-like 8, putative OS=Theobroma cacao GN=TCM_022720 PE=4 SV=1) HSP 1 Score: 120.2 bits (300), Expect = 4.5e-24 Identity = 63/140 (45.00%), Postives = 77/140 (55.00%), Query Frame = 1
HSP 2 Score: 250.4 bits (638), Expect = 2.9e-63 Identity = 114/177 (64.41%), Postives = 135/177 (76.27%), Query Frame = 1
BLAST of Csa6G454320 vs. TrEMBL
Match: A0A072VV51_MEDTR (Pmr5/Cas1p GDSL/SGNH-like acyl-esterase family protein OS=Medicago truncatula GN=MTR_1g058380 PE=4 SV=1) HSP 1 Score: 122.1 bits (305), Expect = 1.2e-24 Identity = 65/125 (52.00%), Postives = 76/125 (60.80%), Query Frame = 1
HSP 2 Score: 247.7 bits (631), Expect = 1.8e-62 Identity = 112/170 (65.88%), Postives = 132/170 (77.65%), Query Frame = 1
BLAST of Csa6G454320 vs. TAIR10
Match: AT3G11570.1 (AT3G11570.1 TRICHOME BIREFRINGENCE-LIKE 8) HSP 1 Score: 238.4 bits (607), Expect = 5.7e-63 Identity = 107/169 (63.31%), Postives = 127/169 (75.15%), Query Frame = 1
HSP 2 Score: 84.3 bits (207), Expect = 1.4e-16 Identity = 35/58 (60.34%), Postives = 39/58 (67.24%), Query Frame = 1
BLAST of Csa6G454320 vs. TAIR10
Match: AT5G06230.1 (AT5G06230.1 TRICHOME BIREFRINGENCE-LIKE 9) HSP 1 Score: 222.2 bits (565), Expect = 4.2e-58 Identity = 102/174 (58.62%), Postives = 126/174 (72.41%), Query Frame = 1
HSP 2 Score: 78.2 bits (191), Expect = 9.8e-15 Identity = 37/72 (51.39%), Postives = 42/72 (58.33%), Query Frame = 1
BLAST of Csa6G454320 vs. TAIR10
Match: AT5G06700.1 (AT5G06700.1 Plant protein of unknown function (DUF828)) HSP 1 Score: 153.7 bits (387), Expect = 1.8e-37 Identity = 71/158 (44.94%), Postives = 100/158 (63.29%), Query Frame = 1
HSP 2 Score: 58.2 bits (139), Expect = 1.1e-08 Identity = 21/56 (37.50%), Postives = 35/56 (62.50%), Query Frame = 1
BLAST of Csa6G454320 vs. TAIR10
Match: AT5G20590.1 (AT5G20590.1 TRICHOME BIREFRINGENCE-LIKE 5) HSP 1 Score: 152.1 bits (383), Expect = 5.4e-37 Identity = 74/189 (39.15%), Postives = 101/189 (53.44%), Query Frame = 1
HSP 2 Score: 68.6 bits (166), Expect = 7.8e-12 Identity = 28/57 (49.12%), Postives = 35/57 (61.40%), Query Frame = 1
BLAST of Csa6G454320 vs. TAIR10
Match: AT3G12060.1 (AT3G12060.1 Plant protein of unknown function (DUF828)) HSP 1 Score: 150.6 bits (379), Expect = 1.6e-36 Identity = 72/158 (45.57%), Postives = 99/158 (62.66%), Query Frame = 1
HSP 2 Score: 58.9 bits (141), Expect = 6.2e-09 Identity = 26/66 (39.39%), Postives = 37/66 (56.06%), Query Frame = 1
BLAST of Csa6G454320 vs. NCBI nr
Match: gi|700193080|gb|KGN48284.1| (hypothetical protein Csa_6G454320 [Cucumis sativus]) HSP 1 Score: 668.3 bits (1723), Expect = 6.3e-189 Identity = 302/302 (100.00%), Postives = 302/302 (100.00%), Query Frame = 1
BLAST of Csa6G454320 vs. NCBI nr
Match: gi|449451281|ref|XP_004143390.1| (PREDICTED: protein trichome birefringence-like 8 [Cucumis sativus]) HSP 1 Score: 353.2 bits (905), Expect = 4.5e-94 Identity = 162/170 (95.29%), Postives = 163/170 (95.88%), Query Frame = 1
BLAST of Csa6G454320 vs. NCBI nr
Match: gi|449451281|ref|XP_004143390.1| (PREDICTED: protein trichome birefringence-like 8 [Cucumis sativus]) HSP 1 Score: 321.6 bits (823), Expect = 1.4e-84 Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 1
HSP 2 Score: 344.0 bits (881), Expect = 2.7e-91 Identity = 156/160 (97.50%), Postives = 159/160 (99.38%), Query Frame = 1
BLAST of Csa6G454320 vs. NCBI nr
Match: gi|659125270|ref|XP_008462600.1| (PREDICTED: protein trichome birefringence-like 8 [Cucumis melo]) HSP 1 Score: 72.4 bits (176), Expect = 1.5e-09 Identity = 30/37 (81.08%), Postives = 31/37 (83.78%), Query Frame = 1
HSP 2 Score: 265.8 bits (678), Expect = 9.4e-68 Identity = 119/169 (70.41%), Postives = 137/169 (81.07%), Query Frame = 1
BLAST of Csa6G454320 vs. NCBI nr
Match: gi|470139825|ref|XP_004305646.1| (PREDICTED: protein trichome birefringence-like 8 [Fragaria vesca subsp. vesca]) HSP 1 Score: 121.7 bits (304), Expect = 2.2e-24 Identity = 68/143 (47.55%), Postives = 89/143 (62.24%), Query Frame = 1
HSP 2 Score: 260.8 bits (665), Expect = 3.0e-66 Identity = 116/169 (68.64%), Postives = 135/169 (79.88%), Query Frame = 1
The following BLAST results are available for this feature:
GO Assignments
This gene is annotated with the following GO terms.
This gene is associated with the following unigenes:
The following mRNA feature(s) are a part of this gene:
The following transcribed_cluster feature(s) are associated with this gene:
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |