Csa6G446480 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa6G446480
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr6 : 20974782 .. 20976105 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTCACTTCTTCCATTGCCGCCCAACCAGTCCCACCACCCACCGTCGCTCAACGGTAAGTTTTATTCGTTCTTTCCCATTCGCTTTCTCCATTTCTCTCACTCATGCCCACCCAACCGTAGCAAGCGCCAGATTTTCGCCCAACTTCGCACGCCGTCTTCGCATATCCGCCTTTGGTTGGTTCCGATTCCCTTCCCTTCTCTTTTATTATTCACTATCTATTTCACTATCCATCTCTCTATCTTCATCTTCATGTTCCAGCCCAGAATTTCCGCTGACATCTTTCAAGCTCGTCGCTGCCGGGGTAACTTCTTGTCGATTGCGGGCGCTGCTTGTTCTCGTAGTAGGTAAGAGTTTCTGACGGATTTTTGGGTTTTATCGGCAATTCTTGATCACCCACTAAGTTTGAACAAAAACTTAGGTCACTCGTATTGTTTTGATGTTAAATTATAGGGATTAGGCGCCTAGATTTGGCTGTTCAATGACTTGTTGTCATGTATTGCTTTCTAAAATACTTTAATTGTTCTTGAAGTCACTTCTAATGGGTTTCTACTTCTTGTTGTTTATGCATCAGTTTGAATCATTTTGTGTAGTTTTGAAGTGGATTTGGACTAACCCACAATTTGGATAAGTTGTTTAAAGAGACGGATGAATTTATGTTTTGGAATATGAACAGAAAGGTTGGAGTTGTTTTGGCTTGGGTTTTAGGTTTGGAGTGAGGTTTCTCTAAGTCGAAAGAACTCTATATTGGAGTACCTATGTGCTAAGCCGGAATTATATCGATATTATTTTTCGCTGGGTAAAGCAAAGGGAAAATTTTATTCCAAATGCCAGTTATCCTTTACAACAAAGAGAAGCCTTGCATTTAAAGATTTTCCAAACCAACTAACTTGCTGGACATGAAAAACAAACTTAAAGGCCTAAAAGGCGCGCCCTAACAAAGCAAGGGCAAGAACAAGTCGGGAAGGCACGAACCACATCATTGGCCTTGCAAAAACAAGTTTAGAAAGCTTGTTTGTTTTGCTTTTACTGATTGATAAAAATTTATAAGCATGCTATGTAAATTTCATGTGTTATGATAATTGTATTGTGGGACCCTATTAGTTATTGCATTTTGTAGGCTAGATCATAGTTACTAGTAGCTTTGTACATACCAGTTTGTGTGCCTTAGCGCGCATCTAAGATTGGGTCGTTTTCATCTGATTGCAATTTTCAATTATCGTGCATGTAGTAATGACTTCAGTTAGAGGTCTTGGACAGTTGGGTAGTTACTATGATTCTCGAATTGGCACGACGTGGAATGCCTTTAATGGAAATCACTAG

mRNA sequence

ATGCTCACTTCTTCCATTGCCGCCCAACCAGTCCCACCACCCACCGTCGCTCAACGCAAGCGCCAGATTTTCGCCCAACTTCGCACGCCGTCTTCGCATATCCGCCTTTGCCCAGAATTTCCGCTGACATCTTTCAAGCTCGTCGCTGCCGGGGTAACTTCTTGTCGATTGCGGGCGCTGCTTGTTCTCGTAGTAGTAATGACTTCAGTTAGAGGTCTTGGACAGTTGGGTAGTTACTATGATTCTCGAATTGGCACGACGTGGAATGCCTTTAATGGAAATCACTAG

Coding sequence (CDS)

ATGCTCACTTCTTCCATTGCCGCCCAACCAGTCCCACCACCCACCGTCGCTCAACGCAAGCGCCAGATTTTCGCCCAACTTCGCACGCCGTCTTCGCATATCCGCCTTTGCCCAGAATTTCCGCTGACATCTTTCAAGCTCGTCGCTGCCGGGGTAACTTCTTGTCGATTGCGGGCGCTGCTTGTTCTCGTAGTAGTAATGACTTCAGTTAGAGGTCTTGGACAGTTGGGTAGTTACTATGATTCTCGAATTGGCACGACGTGGAATGCCTTTAATGGAAATCACTAG

Protein sequence

MLTSSIAAQPVPPPTVAQRKRQIFAQLRTPSSHIRLCPEFPLTSFKLVAAGVTSCRLRALLVLVVVMTSVRGLGQLGSYYDSRIGTTWNAFNGNH*
Homology
[Close]
BLAST of Csa6G446480 vs. TrEMBL
Match: A0A0A0KF55_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G446480 PE=4 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 3.8e-46
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 1 

Query: 1  MLTSSIAAQPVPPPTVAQRKRQIFAQLRTPSSHIRLCPEFPLTSFKLVAAGVTSCRLRAL 60
          MLTSSIAAQPVPPPTVAQRKRQIFAQLRTPSSHIRLCPEFPLTSFKLVAAGVTSCRLRAL
Sbjct: 1  MLTSSIAAQPVPPPTVAQRKRQIFAQLRTPSSHIRLCPEFPLTSFKLVAAGVTSCRLRAL 60

Query: 61 LVLVVVMTSVRGLGQLGSYYDSRIGTTWNAFNGNH 96
          LVLVVVMTSVRGLGQLGSYYDSRIGTTWNAFNGNH
Sbjct: 61 LVLVVVMTSVRGLGQLGSYYDSRIGTTWNAFNGNH 95

[Close]
BLAST of Csa6G446480 vs. NCBI nr
Match: gi|700192984|gb|KGN48188.1| (hypothetical protein Csa_6G446480 [Cucumis sativus])

HSP 1 Score: 191.8 bits (486), Expect = 5.5e-46
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 1 

Query: 1  MLTSSIAAQPVPPPTVAQRKRQIFAQLRTPSSHIRLCPEFPLTSFKLVAAGVTSCRLRAL 60
          MLTSSIAAQPVPPPTVAQRKRQIFAQLRTPSSHIRLCPEFPLTSFKLVAAGVTSCRLRAL
Sbjct: 1  MLTSSIAAQPVPPPTVAQRKRQIFAQLRTPSSHIRLCPEFPLTSFKLVAAGVTSCRLRAL 60

Query: 61 LVLVVVMTSVRGLGQLGSYYDSRIGTTWNAFNGNH 96
          LVLVVVMTSVRGLGQLGSYYDSRIGTTWNAFNGNH
Sbjct: 61 LVLVVVMTSVRGLGQLGSYYDSRIGTTWNAFNGNH 95

The following BLAST results are available for this feature:
BLAST of Csa6G446480 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KF55_CUCSA3.8e-46100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G446480 PE=4 SV=1[more]
BLAST of Csa6G446480 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700192984|gb|KGN48188.1|5.5e-46100.00hypothetical protein Csa_6G446480 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU095187cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa6G446480.1Csa6G446480.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU095187CU095187transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa6G446480CSPI06G24700Wild cucumber (PI 183967)cpicuB313
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa6G446480Cucumber (Chinese Long) v2cucuB109
Csa6G446480Cucumber (Chinese Long) v2cucuB168
Csa6G446480Cucumber (Gy14) v1cgycuB167
Csa6G446480Cucumber (Gy14) v1cgycuB439
Csa6G446480Cucumber (Gy14) v1cgycuB542
Csa6G446480Cucurbita maxima (Rimu)cmacuB267
Csa6G446480Cucurbita maxima (Rimu)cmacuB561
Csa6G446480Cucurbita maxima (Rimu)cmacuB681
Csa6G446480Cucurbita maxima (Rimu)cmacuB840
Csa6G446480Cucurbita maxima (Rimu)cmacuB878
Csa6G446480Cucurbita moschata (Rifu)cmocuB253
Csa6G446480Cucurbita moschata (Rifu)cmocuB670
Csa6G446480Cucurbita moschata (Rifu)cmocuB828
Csa6G446480Cucurbita moschata (Rifu)cmocuB865
Csa6G446480Melon (DHL92) v3.5.1cumeB484
Csa6G446480Melon (DHL92) v3.5.1cumeB490
Csa6G446480Melon (DHL92) v3.5.1cumeB508
Csa6G446480Watermelon (Charleston Gray)cuwcgB424
Csa6G446480Watermelon (Charleston Gray)cuwcgB444
Csa6G446480Watermelon (Charleston Gray)cuwcgB464
Csa6G446480Watermelon (97103) v1cuwmB452
Csa6G446480Watermelon (97103) v1cuwmB505
Csa6G446480Watermelon (97103) v1cuwmB518
Csa6G446480Cucurbita pepo (Zucchini)cpecuB085
Csa6G446480Cucurbita pepo (Zucchini)cpecuB296
Csa6G446480Cucurbita pepo (Zucchini)cpecuB503
Csa6G446480Cucurbita pepo (Zucchini)cpecuB624
Csa6G446480Cucurbita pepo (Zucchini)cpecuB876
Csa6G446480Bottle gourd (USVL1VR-Ls)culsiB435
Csa6G446480Bottle gourd (USVL1VR-Ls)culsiB445
Csa6G446480Cucumber (Gy14) v2cgybcuB137
Csa6G446480Cucumber (Gy14) v2cgybcuB281
Csa6G446480Cucumber (Gy14) v2cgybcuB284
Csa6G446480Melon (DHL92) v3.6.1cumedB411
Csa6G446480Melon (DHL92) v3.6.1cumedB464
Csa6G446480Melon (DHL92) v3.6.1cumedB487
Csa6G446480Silver-seed gourdcarcuB0181
Csa6G446480Silver-seed gourdcarcuB0267
Csa6G446480Silver-seed gourdcarcuB0278
Csa6G446480Silver-seed gourdcarcuB0678
Csa6G446480Watermelon (97103) v2cuwmbB418
Csa6G446480Watermelon (97103) v2cuwmbB434
Csa6G446480Watermelon (97103) v2cuwmbB455
Csa6G446480Wax gourdcuwgoB529
Csa6G446480Wax gourdcuwgoB614
Csa6G446480Wax gourdcuwgoB629