CSPI06G24700 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI06G24700
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr6 : 22049857 .. 22051164 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTCACTTCTTCCATTGCCGCCCAACCAGTCCCACCACCCACCGTCGCTCAACGGTAAGTTTTATTCGTTCTTTCCCATTCGCTTTCTCCATTTCTCTCACTCATGCCCACCCAACCGTAGCAAGTGCCAGATTTTCGCCCAACTTCGCACGCCGTCTTCGCATATCCGCCTTTGGTTGGTTCCGATTCCCTTCCCTTCTCTTTTATTATTCACTATCCATCTCTCTATCTTCATCTTCATGTTCCAGACCAGAATTTCCGCTGACATCTTTCAAGCTCGTCGCTGCCGGGGTAACTTCTTGTCGATTGCGGGCGCTGCTTGTTCTCGTAGTAGGTAAGAGTTTCTGACGGATTTTTGGGTTTTATAGGCAATTCTTGATCACCCACTAAGTTTGAACAAAAACTTAGGTCACTCGTATTGTTTTGATGTTAAATTATAGGGATTAGGCGCCTAGATTTGGCTGTTCAATGACTTGTTGTCATGTATTGCTTTCTAAAATACTTTAATTGTTCTTGAAGTCACTTCTAATGGGTTTCTACTTCTTGTTGTTTATGCATCAGTTTGAATCATTTTGTGTAGTTTTGAAGTGGATTTAGATTAACCCACAATTTGGATAAGTTGTTTAAAGAGACGGATGAATTTATGTTTTGGAATATGAACAGAAAGGTTGGAGTTGTTTTGGCTTGTGTTTTAGGTTTGGAGTGAGGTTTCTCTAAGTCGAAAGAACTCTATATTGGAGTACCTATGTGCTAAGCCGGAATTATATCGATATTATTTTTCGCTGGGTAAAGCAAAGGGAAAATTTTATTCCAAATGCCAGTTATCCTTTACAACAAAGAGAAGCCTTGCATTTAAAGATTTTCCAAACCAACTAACTTGCTGGACATGAAAAACAAACTTAAAGGCCTAAAAGGCGCGCCCTAACAAAACAAGGGCAGAACAAGTCGGGAAGGCACGAACCACATCATTGGCCTTGCAAAAACAAGTTTAGAAAGCTTGTTTGTTTTGCTTTTACTGATTGATAAAAATTTATAAGCATGCTATGTAAATTTCATGTGTTATGATAATAGTATTGTGGGACCCTATTAATTATTGCATTTTGTAGGCTAGATCATAGTTACTAGTAGCTTTGTACATACCAGTTTGTGTGCCTTAGCGCGCATCTAAGATTGTGTTGTTTTCATCTGATTGCAATTTTCAATTATCGTGCATGTAGTAATGACTTCAGTTAGAGGTCTTGGAAAGTTGGGTAGTTACTATGATACTCGAATTGGCACGACGTGGAATGCCTTTAATGGAAATCAC

mRNA sequence

ATGCTCACTTCTTCCATTGCCGCCCAACCAGTCCCACCACCCACCGTCGCTCAACGACCAGAATTTCCGCTGACATCTTTCAAGCTCGTCGCTGCCGGGGTAACTTCTTGTCGATTGCGGGCGCTGCTTGTTCTCGTAGTAGTAATGACTTCAGTTAGAGGTCTTGGAAAGTTGGGTAGTTACTATGATACTCGAATTGGCACGACGTGGAATGCCTTTAATGGAAATCAC

Coding sequence (CDS)

ATGCTCACTTCTTCCATTGCCGCCCAACCAGTCCCACCACCCACCGTCGCTCAACGACCAGAATTTCCGCTGACATCTTTCAAGCTCGTCGCTGCCGGGGTAACTTCTTGTCGATTGCGGGCGCTGCTTGTTCTCGTAGTAGTAATGACTTCAGTTAGAGGTCTTGGAAAGTTGGGTAGTTACTATGATACTCGAATTGGCACGACGTGGAATGCCTTTAATGGAAATCAC
Homology
[Close]
BLAST of CSPI06G24700 vs. TrEMBL
Match: A0A0A0KF55_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G446480 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 8.9e-30
Identity = 75/95 (78.95%), Postives = 77/95 (81.05%), Query Frame = 1 

Query: 1  MLTSSIAAQPVPPPTVAQR------------------PEFPLTSFKLVAAGVTSCRLRAL 60
          MLTSSIAAQPVPPPTVAQR                  PEFPLTSFKLVAAGVTSCRLRAL
Sbjct: 1  MLTSSIAAQPVPPPTVAQRKRQIFAQLRTPSSHIRLCPEFPLTSFKLVAAGVTSCRLRAL 60

Query: 61 LVLVVVMTSVRGLGKLGSYYDTRIGTTWNAFNGNH 78
          LVLVVVMTSVRGLG+LGSYYD+RIGTTWNAFNGNH
Sbjct: 61 LVLVVVMTSVRGLGQLGSYYDSRIGTTWNAFNGNH 95

[Close]
BLAST of CSPI06G24700 vs. NCBI nr
Match: gi|700192984|gb|KGN48188.1| (hypothetical protein Csa_6G446480 [Cucumis sativus])

HSP 1 Score: 137.1 bits (344), Expect = 1.3e-29
Identity = 75/95 (78.95%), Postives = 77/95 (81.05%), Query Frame = 1 

Query: 1  MLTSSIAAQPVPPPTVAQR------------------PEFPLTSFKLVAAGVTSCRLRAL 60
          MLTSSIAAQPVPPPTVAQR                  PEFPLTSFKLVAAGVTSCRLRAL
Sbjct: 1  MLTSSIAAQPVPPPTVAQRKRQIFAQLRTPSSHIRLCPEFPLTSFKLVAAGVTSCRLRAL 60

Query: 61 LVLVVVMTSVRGLGKLGSYYDTRIGTTWNAFNGNH 78
          LVLVVVMTSVRGLG+LGSYYD+RIGTTWNAFNGNH
Sbjct: 61 LVLVVVMTSVRGLGQLGSYYDSRIGTTWNAFNGNH 95

The following BLAST results are available for this feature:
BLAST of CSPI06G24700 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI06G24700 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KF55_CUCSA8.9e-3078.95Uncharacterized protein OS=Cucumis sativus GN=Csa_6G446480 PE=4 SV=1[more]
BLAST of CSPI06G24700 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI06G24700 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700192984|gb|KGN48188.1|1.3e-2978.95hypothetical protein Csa_6G446480 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI06G24700.1CSPI06G24700.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI06G24700Csa6G446480Cucumber (Chinese Long) v2cpicuB313
CSPI06G24700CsaV3_6G039910Cucumber (Chinese Long) v3cpicucB363
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI06G24700Watermelon (97103) v2cpiwmbB442
CSPI06G24700Watermelon (97103) v2cpiwmbB458
CSPI06G24700Watermelon (97103) v2cpiwmbB479
CSPI06G24700Wax gourdcpiwgoB532
CSPI06G24700Wax gourdcpiwgoB619
CSPI06G24700Wax gourdcpiwgoB635
CSPI06G24700Wild cucumber (PI 183967)cpicpiB124
CSPI06G24700Wild cucumber (PI 183967)cpicpiB186
CSPI06G24700Cucumber (Gy14) v1cgycpiB168
CSPI06G24700Cucumber (Gy14) v1cgycpiB462
CSPI06G24700Cucumber (Gy14) v1cgycpiB571
CSPI06G24700Cucurbita maxima (Rimu)cmacpiB271
CSPI06G24700Cucurbita maxima (Rimu)cmacpiB689
CSPI06G24700Cucurbita maxima (Rimu)cmacpiB894
CSPI06G24700Cucurbita moschata (Rifu)cmocpiB259
CSPI06G24700Cucurbita moschata (Rifu)cmocpiB681
CSPI06G24700Cucurbita moschata (Rifu)cmocpiB838
CSPI06G24700Cucurbita moschata (Rifu)cmocpiB874
CSPI06G24700Cucumber (Chinese Long) v2cpicuB282
CSPI06G24700Cucumber (Chinese Long) v2cpicuB315
CSPI06G24700Melon (DHL92) v3.5.1cpimeB481
CSPI06G24700Melon (DHL92) v3.5.1cpimeB487
CSPI06G24700Melon (DHL92) v3.5.1cpimeB513
CSPI06G24700Watermelon (Charleston Gray)cpiwcgB444
CSPI06G24700Watermelon (Charleston Gray)cpiwcgB463
CSPI06G24700Watermelon (Charleston Gray)cpiwcgB488
CSPI06G24700Watermelon (97103) v1cpiwmB467
CSPI06G24700Watermelon (97103) v1cpiwmB481
CSPI06G24700Watermelon (97103) v1cpiwmB524
CSPI06G24700Watermelon (97103) v1cpiwmB534
CSPI06G24700Cucurbita pepo (Zucchini)cpecpiB081
CSPI06G24700Cucurbita pepo (Zucchini)cpecpiB503
CSPI06G24700Cucurbita pepo (Zucchini)cpecpiB627
CSPI06G24700Bottle gourd (USVL1VR-Ls)cpilsiB440
CSPI06G24700Bottle gourd (USVL1VR-Ls)cpilsiB452
CSPI06G24700Melon (DHL92) v3.6.1cpimedB420
CSPI06G24700Melon (DHL92) v3.6.1cpimedB473
CSPI06G24700Melon (DHL92) v3.6.1cpimedB497
CSPI06G24700Cucumber (Gy14) v2cgybcpiB140
CSPI06G24700Cucumber (Gy14) v2cgybcpiB287
CSPI06G24700Cucumber (Gy14) v2cgybcpiB290
CSPI06G24700Silver-seed gourdcarcpiB0271
CSPI06G24700Silver-seed gourdcarcpiB0282
CSPI06G24700Silver-seed gourdcarcpiB0689
CSPI06G24700Cucumber (Chinese Long) v3cpicucB334
CSPI06G24700Cucumber (Chinese Long) v3cpicucB367