Csa6G446350 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa6G446350
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr6 : 20902390 .. 20902722 (+)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATCCAAACCATGGCAATGAAACAGATACTCCCACTAGATTTTCATCGCAATCAGCAACGCAGCGAAGAGGAGAAGATTCCGAGTAATGTATAAAGGGAAAGGGGAAATTAAAAAGGGTAGGATTATGCAGGTAATGGAAAGAGATCCATAGTGGTTGAGTTGAGAAAAGAGGGAATGAAGTTATGGGTATCAGAAACTGCAATTGGGTTGAGGAAGAAGAAGATACGGAAGTTGGAACTGCAATGGATGTAGAGAAATGTGAAAGACTTACTGAAATTAGGTCAATGGAAGCCATGGAAATTCCAAAGGAAGTCCTGATTTGGGGATGA

mRNA sequence

ATGAATCCAAACCATGGCAATGAAACAGATACTCCCACTAGATTTTCATCGCAATCAGCAACGCAGCGAAGAGGAGAAGATTCCGAAAACTGCAATTGGGTTGAGGAAGAAGAAGATACGGAAGTTGGAACTGCAATGGATGTAGAGAAATGTGAAAGACTTACTGAAATTAGGTCAATGGAAGCCATGGAAATTCCAAAGGAAGTCCTGATTTGGGGATGA

Coding sequence (CDS)

ATGAATCCAAACCATGGCAATGAAACAGATACTCCCACTAGATTTTCATCGCAATCAGCAACGCAGCGAAGAGGAGAAGATTCCGAAAACTGCAATTGGGTTGAGGAAGAAGAAGATACGGAAGTTGGAACTGCAATGGATGTAGAGAAATGTGAAAGACTTACTGAAATTAGGTCAATGGAAGCCATGGAAATTCCAAAGGAAGTCCTGATTTGGGGATGA

Protein sequence

MNPNHGNETDTPTRFSSQSATQRRGEDSENCNWVEEEEDTEVGTAMDVEKCERLTEIRSMEAMEIPKEVLIWG*
Homology
[Close]
BLAST of Csa6G446350 vs. TrEMBL
Match: A0A0A0KH81_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G446350 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 3.0e-35
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 1 

Query: 1  MNPNHGNETDTPTRFSSQSATQRRGEDSENCNWVEEEEDTEVGTAMDVEKCERLTEIRSM 60
          MNPNHGNETDTPTRFSSQSATQRRGEDSENCNWVEEEEDTEVGTAMDVEKCERLTEIRSM
Sbjct: 1  MNPNHGNETDTPTRFSSQSATQRRGEDSENCNWVEEEEDTEVGTAMDVEKCERLTEIRSM 60

Query: 61 EAMEIPKEVLIWG 74
          EAMEIPKEVLIWG
Sbjct: 61 EAMEIPKEVLIWG 73

[Close]
BLAST of Csa6G446350 vs. NCBI nr
Match: gi|700192970|gb|KGN48174.1| (hypothetical protein Csa_6G446350 [Cucumis sativus])

HSP 1 Score: 155.2 bits (391), Expect = 4.4e-35
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 1 

Query: 1  MNPNHGNETDTPTRFSSQSATQRRGEDSENCNWVEEEEDTEVGTAMDVEKCERLTEIRSM 60
          MNPNHGNETDTPTRFSSQSATQRRGEDSENCNWVEEEEDTEVGTAMDVEKCERLTEIRSM
Sbjct: 1  MNPNHGNETDTPTRFSSQSATQRRGEDSENCNWVEEEEDTEVGTAMDVEKCERLTEIRSM 60

Query: 61 EAMEIPKEVLIWG 74
          EAMEIPKEVLIWG
Sbjct: 61 EAMEIPKEVLIWG 73

The following BLAST results are available for this feature:
BLAST of Csa6G446350 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KH81_CUCSA3.0e-35100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G446350 PE=4 SV=1[more]
BLAST of Csa6G446350 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700192970|gb|KGN48174.1|4.4e-35100.00hypothetical protein Csa_6G446350 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU142872cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa6G446350.1Csa6G446350.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU142872CU142872transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa6G446350Cp4.1LG10g04660Cucurbita pepo (Zucchini)cpecuB085
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa6G446350Watermelon (97103) v2cuwmbB418
Csa6G446350Watermelon (97103) v2cuwmbB434
Csa6G446350Watermelon (97103) v2cuwmbB455
Csa6G446350Wax gourdcuwgoB529
Csa6G446350Wax gourdcuwgoB629
Csa6G446350Cucumber (Chinese Long) v2cucuB109
Csa6G446350Cucumber (Chinese Long) v2cucuB168
Csa6G446350Cucumber (Gy14) v1cgycuB167
Csa6G446350Cucumber (Gy14) v1cgycuB439
Csa6G446350Cucumber (Gy14) v1cgycuB542
Csa6G446350Cucurbita maxima (Rimu)cmacuB267
Csa6G446350Cucurbita maxima (Rimu)cmacuB561
Csa6G446350Cucurbita maxima (Rimu)cmacuB681
Csa6G446350Cucurbita maxima (Rimu)cmacuB840
Csa6G446350Cucurbita maxima (Rimu)cmacuB878
Csa6G446350Cucurbita moschata (Rifu)cmocuB253
Csa6G446350Cucurbita moschata (Rifu)cmocuB670
Csa6G446350Cucurbita moschata (Rifu)cmocuB828
Csa6G446350Cucurbita moschata (Rifu)cmocuB865
Csa6G446350Melon (DHL92) v3.5.1cumeB484
Csa6G446350Melon (DHL92) v3.5.1cumeB490
Csa6G446350Watermelon (Charleston Gray)cuwcgB424
Csa6G446350Watermelon (Charleston Gray)cuwcgB444
Csa6G446350Watermelon (Charleston Gray)cuwcgB464
Csa6G446350Watermelon (97103) v1cuwmB452
Csa6G446350Watermelon (97103) v1cuwmB505
Csa6G446350Watermelon (97103) v1cuwmB518
Csa6G446350Cucurbita pepo (Zucchini)cpecuB296
Csa6G446350Cucurbita pepo (Zucchini)cpecuB503
Csa6G446350Cucurbita pepo (Zucchini)cpecuB624
Csa6G446350Cucurbita pepo (Zucchini)cpecuB876
Csa6G446350Bottle gourd (USVL1VR-Ls)culsiB435
Csa6G446350Bottle gourd (USVL1VR-Ls)culsiB445
Csa6G446350Cucumber (Gy14) v2cgybcuB137
Csa6G446350Cucumber (Gy14) v2cgybcuB281
Csa6G446350Cucumber (Gy14) v2cgybcuB284
Csa6G446350Melon (DHL92) v3.6.1cumedB411
Csa6G446350Melon (DHL92) v3.6.1cumedB488
Csa6G446350Melon (DHL92) v3.6.1cumedB464
Csa6G446350Silver-seed gourdcarcuB0181
Csa6G446350Silver-seed gourdcarcuB0267
Csa6G446350Silver-seed gourdcarcuB0278