Cp4.1LG10g04660 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG10g04660
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG10 : 1335386 .. 1337222 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCATGTAAGACCTTGAGGGCAAAAGAAACCCTCACAACAAGATTGACAATCCTCCGTTCTAGAAGGAAACTTTGTACTTTTAAGGTCAACTTTGTCTTTTCCAACACTGCAACTCCAACCTGGTTCACATCCAGAAACCCACGATGTTAAATTGCAGTTCTTGTTAGGTTTTATGTAAGTGTACGTGATCCCTGAATTTGGCCCCCTCGCTCTGAAACTACTGAAGAAGAATCTAAGCTCAGCTGCAGTACACAGTCGTGTTGTAAGATCTCCTGTTAAGAAATTAATATGGAGGAAAAGTTGTAAGACGTAAGAAAATGTTAATAACTGAGCGATGAAAATAGAAAAGAAAGATGATAAAAGTGAATGCAACCAATTCAACTAGCTCAACTCTTTTTCATTTGAATGTATAATGAGGCCGTGGAGATACATAAACAGACAGCCACTGACATCTAAAAAGGAGGATATGTCATCTACATTCTAGTGTAATAACAATTACACTACTTAATTTTGAGTTGTAGGTAAAATAGATAGCAGTGAAAGCACTAGAGCATTATCCCCCAAAACGATTCAACCTATGTCGCATTTGGTCCTTGCATTTTTGTTCAATTTTCAATTTTGGCTCTAACAATTGATATCTAGTTGTATGCTTACCTCTGTTAAAATCTTCTCTTTTTCTTGGGTTGTATTATATGGACCCCTATAGTCCCATATTTTGTAATTCTTGAACTTTTTTTTTTTTTTTTTTTTTTACGATGAAGATCATTCAAATAAGTAAGAATGCCATATCTGTGGAAAAAGGAATTACAGATCAAGAAAGACACATTGACTACACCAGAATGGAATACAAATTTCTTTCGTTATCCTAATTTTAAAGAACCAGGTCGATCACCCCTCAACCAACACATCTCCGTGCAGTTCCTCTCACCTCGAAGACTAAAATGACATTAGATGATACGATCAAAGATTAAAAATATAGTGTTTAGCCTATAACCTTCTTATACGATTATAGAGAATAAAAAACTTAACTTATAATACTATACCTTTTGTCTTCTTAATACACTTAGTTAAGAAATCGATGTTATCCTGATAATTGAATGCACCATTCCAATCGGAATCCCTGGTAGAAAGCAAGGAGCTATCAAGATAAGAACATGAATACAACAAATAGTAAGTAGCAAACTATATCACATGAATACGCACAAATCTTTTACACAGAACCCCCAATTTGTACCAATGTCATTGCTTATAATGCGTGTCATATTCGTGAGCCGACCATTAACTATCTGTGTGACCGAAGAAAGTAAGGCCGGGTCACCCTTCTGACGGTAATCATCTTCATCCTCACAACGAATAGTCGGAAATCGACTTAGAACAATGACTATAAACAACAAAATATGAGATAGACAGCATCCGGTTATCTTCTTTACATGCATTTCCTAGTGCTTAAAATTCCCCAATATAAGTTCGCATAGATAGCTAAAATTGCGATGATTCAAAACCATGGCAATGTAACGGATACTCCCTTTAGGTATCCATCGCAATCAGCAACGCTGAGCGAAGAGGAGATTCCGAGTAATTGATAGTCGTACGATCACGACGATAAAGGTGAAGAACAAAAAAAAGTGCGATTACGCATGTTTAAGAAAGAGACCCATAGTCTTCGAGTTGAGAAAATATAGAATGAATCCAAAGGTATCTGTAAATGCAATCGGGTTGAAGAAGAAGCTATGGAAGTTGGAACTCCAATGGAGGTGGAGAAATCGGGAAGACCTGCTGAAACTGGGTCAAGGGAGGCCATGGAATTTCCAAAGGAAGTCCTGATTTGGGGATGA

mRNA sequence

ATGCATATAGCTAAAATTGCGATGATTCAAAACCATGGCAATGTAACGGATACTCCCTTTAGGTATCCATCGCAATCAGCAACGCTGAGCGAAGAGGAGATTCCGAGTATCTGTAAATGCAATCGGGTTGAAGAAGAAGCTATGGAAGTTGGAACTCCAATGGAGGTGGAGAAATCGGGAAGACCTGCTGAAACTGGGTCAAGGGAGGCCATGGAATTTCCAAAGGAAGTCCTGATTTGGGGATGA

Coding sequence (CDS)

ATGCATATAGCTAAAATTGCGATGATTCAAAACCATGGCAATGTAACGGATACTCCCTTTAGGTATCCATCGCAATCAGCAACGCTGAGCGAAGAGGAGATTCCGAGTATCTGTAAATGCAATCGGGTTGAAGAAGAAGCTATGGAAGTTGGAACTCCAATGGAGGTGGAGAAATCGGGAAGACCTGCTGAAACTGGGTCAAGGGAGGCCATGGAATTTCCAAAGGAAGTCCTGATTTGGGGATGA

Protein sequence

MHIAKIAMIQNHGNVTDTPFRYPSQSATLSEEEIPSICKCNRVEEEAMEVGTPMEVEKSGRPAETGSREAMEFPKEVLIWG
Homology
[Close]
BLAST of Cp4.1LG10g04660 vs. TrEMBL
Match: A0A0A0KH81_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G446350 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 7.5e-11
Identity = 45/75 (60.00%), Postives = 47/75 (62.67%), Query Frame = 1 

Query: 8  MIQNHGNVTDTPFRYPSQSATLSEEEIPSICKCNRVEEEA-MEVGTPMEVEKSGRPAETG 67
          M  NHGN TDTP R+ SQSAT    E      CN VEEE   EVGT M+VEK  R  E  
Sbjct: 1  MNPNHGNETDTPTRFSSQSATQRRGEDSE--NCNWVEEEEDTEVGTAMDVEKCERLTEIR 60

Query: 68 SREAMEFPKEVLIWG 82
          S EAME PKEVLIWG
Sbjct: 61 SMEAMEIPKEVLIWG 73

[Close]
BLAST of Cp4.1LG10g04660 vs. NCBI nr
Match: gi|700192970|gb|KGN48174.1| (hypothetical protein Csa_6G446350 [Cucumis sativus])

HSP 1 Score: 74.3 bits (181), Expect = 1.1e-10
Identity = 45/75 (60.00%), Postives = 47/75 (62.67%), Query Frame = 1 

Query: 8  MIQNHGNVTDTPFRYPSQSATLSEEEIPSICKCNRVEEEA-MEVGTPMEVEKSGRPAETG 67
          M  NHGN TDTP R+ SQSAT    E      CN VEEE   EVGT M+VEK  R  E  
Sbjct: 1  MNPNHGNETDTPTRFSSQSATQRRGEDSE--NCNWVEEEEDTEVGTAMDVEKCERLTEIR 60

Query: 68 SREAMEFPKEVLIWG 82
          S EAME PKEVLIWG
Sbjct: 61 SMEAMEIPKEVLIWG 73

The following BLAST results are available for this feature:
BLAST of Cp4.1LG10g04660 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG10g04660 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KH81_CUCSA7.5e-1160.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G446350 PE=4 SV=1[more]
BLAST of Cp4.1LG10g04660 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG10g04660 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700192970|gb|KGN48174.1|1.1e-1060.00hypothetical protein Csa_6G446350 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG10g04660.1Cp4.1LG10g04660.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG10g04660Csa6G446350Cucumber (Chinese Long) v2cpecuB085
Cp4.1LG10g04660CsaV3_6G039790Cucumber (Chinese Long) v3cpecucB0093
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG10g04660Wax gourdcpewgoB0067
Cp4.1LG10g04660Wax gourdcpewgoB0082
Cp4.1LG10g04660Wax gourdcpewgoB0100
Cp4.1LG10g04660Cucurbita pepo (Zucchini)cpecpeB070
Cp4.1LG10g04660Cucurbita pepo (Zucchini)cpecpeB075
Cp4.1LG10g04660Cucurbita pepo (Zucchini)cpecpeB076
Cp4.1LG10g04660Cucurbita pepo (Zucchini)cpecpeB092
Cp4.1LG10g04660Cucurbita pepo (Zucchini)cpecpeB107
Cp4.1LG10g04660Cucumber (Gy14) v1cgycpeB0314
Cp4.1LG10g04660Cucumber (Gy14) v1cgycpeB0798
Cp4.1LG10g04660Cucurbita maxima (Rimu)cmacpeB254
Cp4.1LG10g04660Cucurbita maxima (Rimu)cmacpeB656
Cp4.1LG10g04660Cucurbita maxima (Rimu)cmacpeB808
Cp4.1LG10g04660Cucurbita maxima (Rimu)cmacpeB866
Cp4.1LG10g04660Cucurbita moschata (Rifu)cmocpeB218
Cp4.1LG10g04660Cucurbita moschata (Rifu)cmocpeB606
Cp4.1LG10g04660Cucurbita moschata (Rifu)cmocpeB762
Cp4.1LG10g04660Cucurbita moschata (Rifu)cmocpeB806
Cp4.1LG10g04660Wild cucumber (PI 183967)cpecpiB060
Cp4.1LG10g04660Wild cucumber (PI 183967)cpecpiB081
Cp4.1LG10g04660Cucumber (Chinese Long) v2cpecuB064
Cp4.1LG10g04660Bottle gourd (USVL1VR-Ls)cpelsiB054
Cp4.1LG10g04660Bottle gourd (USVL1VR-Ls)cpelsiB063
Cp4.1LG10g04660Watermelon (Charleston Gray)cpewcgB058
Cp4.1LG10g04660Watermelon (Charleston Gray)cpewcgB071
Cp4.1LG10g04660Watermelon (97103) v1cpewmB065
Cp4.1LG10g04660Watermelon (97103) v1cpewmB078
Cp4.1LG10g04660Melon (DHL92) v3.5.1cpemeB055
Cp4.1LG10g04660Melon (DHL92) v3.5.1cpemeB076
Cp4.1LG10g04660Cucumber (Gy14) v2cgybcpeB291
Cp4.1LG10g04660Cucumber (Gy14) v2cgybcpeB710
Cp4.1LG10g04660Cucumber (Gy14) v2cgybcpeB712
Cp4.1LG10g04660Melon (DHL92) v3.6.1cpemedB057
Cp4.1LG10g04660Melon (DHL92) v3.6.1cpemedB069
Cp4.1LG10g04660Melon (DHL92) v3.6.1cpemedB072
Cp4.1LG10g04660Melon (DHL92) v3.6.1cpemedB099
Cp4.1LG10g04660Silver-seed gourdcarcpeB0221
Cp4.1LG10g04660Silver-seed gourdcarcpeB0337
Cp4.1LG10g04660Silver-seed gourdcarcpeB0348
Cp4.1LG10g04660Silver-seed gourdcarcpeB0959
Cp4.1LG10g04660Cucumber (Chinese Long) v3cpecucB0070
Cp4.1LG10g04660Cucumber (Chinese Long) v3cpecucB0095