Csa6G446280 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa6G446280
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Phenylalanine ammonia-lyase; contains IPR001106 (Aromatic amino acid lyase), IPR008948 (L-Aspartase-like), IPR024083 (Fumarase/histidase, N-terminal)
Location	Chr6 : 20855215 .. 20855835 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAGATTCTAATTCCAATAACTTACAAGAATTTTTTCATTCTTCGTTTTCTTATTCTTTTGGATTTCATTCCATTTCTTTCTTTCATACTTACAAATGGCACCAATTGAGACCACATGCAAGAGCTTCACTCATGATCCTCTCAATTGGGGTGTGGCTGCGGAGTCCCTCAAGGGGAGCCATCTAGATGAGGTCAAACGCATGGTAGAGGAGTACCGAAGGCCCCTTGTGAAGCTTGGTGGTGAAACTCTCACCATTTCTCAAGTAGCTGCTATTGCTACTCGAGATTTTGATGTTACTGTTGAGCTTTCTGAGTCTGCTAGAGCAGGTGTGAAAGCTAGTAGTGATTGGGTTATGGAGAGTATGAAAAAAGGCACTGATAGTTACGGAGTTACTACTGGTTTTGGTGCTACCTCTCACAGAAGGACAAAAAATGGTGGGGCTCTTCAGAAGGAGCTTATTCGATTCTTGAATGCTGGTATCTTTGGAAATGGTGCTGAGTCATGTCATACTTTGTCTCGTTCGGCTACCAGAGCAGCCATGTTGGTGAGAATCAATACTCTTCTTCAAGGTTACTCAGGTATTAGATTTGAGATTTTGGAAGCCATCACCAAACTCTTGA

mRNA sequence

ATGGCACCAATTGAGACCACATGCAAGAGCTTCACTCATGATCCTCTCAATTGGGGTGTGGCTGCGGAGTCCCTCAAGGGGAGCCATCTAGATGAGGTCAAACGCATGGTAGAGGAGTACCGAAGGCCCCTTGTGAAGCTTGGTGGTGAAACTCTCACCATTTCTCAAGTAGCTGCTATTGCTACTCGAGATTTTGATGTTACTGTTGAGCTTTCTGAGTCTGCTAGAGCAGGTGTGAAAGCTAGTAGTGATTGGGTTATGGAGAGTATGAAAAAAGGCACTGATAGTTACGGAGTTACTACTGGTTTTGGTGCTACCTCTCACAGAAGGACAAAAAATGGTGGGGCTCTTCAGAAGGAGCTTATTCGATTCTTGAATGCTGGTATCTTTGGAAATGGTGCTGAGTCATGTCATACTTTGTCTCGTTCGGCTACCAGAGCAGCCATGTTGGTTACTCAGGTATTAGATTTGAGATTTTGGAAGCCATCACCAAACTCTTGA

Coding sequence (CDS)

ATGGCACCAATTGAGACCACATGCAAGAGCTTCACTCATGATCCTCTCAATTGGGGTGTGGCTGCGGAGTCCCTCAAGGGGAGCCATCTAGATGAGGTCAAACGCATGGTAGAGGAGTACCGAAGGCCCCTTGTGAAGCTTGGTGGTGAAACTCTCACCATTTCTCAAGTAGCTGCTATTGCTACTCGAGATTTTGATGTTACTGTTGAGCTTTCTGAGTCTGCTAGAGCAGGTGTGAAAGCTAGTAGTGATTGGGTTATGGAGAGTATGAAAAAAGGCACTGATAGTTACGGAGTTACTACTGGTTTTGGTGCTACCTCTCACAGAAGGACAAAAAATGGTGGGGCTCTTCAGAAGGAGCTTATTCGATTCTTGAATGCTGGTATCTTTGGAAATGGTGCTGAGTCATGTCATACTTTGTCTCGTTCGGCTACCAGAGCAGCCATGTTGGTTACTCAGGTATTAGATTTGAGATTTTGGAAGCCATCACCAAACTCTTGA

Protein sequence

MAPIETTCKSFTHDPLNWGVAAESLKGSHLDEVKRMVEEYRRPLVKLGGETLTISQVAAIATRDFDVTVELSESARAGVKASSDWVMESMKKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGAESCHTLSRSATRAAMLVTQVLDLRFWKPSPNS*

Homology

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BLAST of Csa6G446280 vs. Swiss-Prot
Match: PAL2_POPKI (Phenylalanine ammonia-lyase G2B OS=Populus kitakamiensis GN=PALG2B PE=3 SV=1)

HSP 1 Score: 241.9 bits (616), Expect = 5.0e-63
Identity = 121/140 (86.43%), Postives = 125/140 (89.29%), Query Frame = 1


Query: 12  THDPLNWGVAAESLKGSHLDEVKRMVEEYRRPLVKLGGETLTISQVAAIATRDFDVTVEL 71
           T+DPLNWG+AAESLKGSHLDEVKRM+EEYR P+VKLGGETLTI QV AIA+RD  V VEL
Sbjct: 18  TNDPLNWGMAAESLKGSHLDEVKRMIEEYRNPVVKLGGETLTIGQVTAIASRDVGVMVEL 77

Query: 72  SESARAGVKASSDWVMESMKKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFG 131
           SE ARAGVKASSDWVM+SM KGTDSYGVTTGFGATSHRRTK GG LQKELIRFLNAGIFG
Sbjct: 78  SEEARAGVKASSDWVMDSMSKGTDSYGVTTGFGATSHRRTKQGGELQKELIRFLNAGIFG 137

Query: 132 NGAESCHTLSRSATRAAMLV 152
           NG ES HTL RSATRAAMLV
Sbjct: 138 NGTESSHTLPRSATRAAMLV 157

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BLAST of Csa6G446280 vs. Swiss-Prot
Match: PAL1_PEA (Phenylalanine ammonia-lyase 1 OS=Pisum sativum GN=PAL1 PE=2 SV=1)

HSP 1 Score: 241.1 bits (614), Expect = 8.6e-63
Identity = 121/138 (87.68%), Postives = 125/138 (90.58%), Query Frame = 1


Query: 14  DPLNWGVAAESLKGSHLDEVKRMVEEYRRPLVKLGGETLTISQVAAIATRDFDVTVELSE 73
           DPLNWGVAAE++KGSHLDEVKRMVEEYR+P+V+LGGETLTISQVAAIA  D  V VELSE
Sbjct: 33  DPLNWGVAAEAMKGSHLDEVKRMVEEYRKPVVRLGGETLTISQVAAIAAHDHGVKVELSE 92

Query: 74  SARAGVKASSDWVMESMKKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNG 133
           SARAGVKASSDWVMESM KGTDSYGVTTGFGATSHRRTK GGALQKELIRFLNAGIFGNG
Sbjct: 93  SARAGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNG 152

Query: 134 AESCHTLSRSATRAAMLV 152
            ES HTL  +ATRAAMLV
Sbjct: 153 TESSHTLPHTATRAAMLV 170

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BLAST of Csa6G446280 vs. Swiss-Prot
Match: PALY_CAMSI (Phenylalanine ammonia-lyase OS=Camellia sinensis GN=PAL PE=2 SV=1)

HSP 1 Score: 239.2 bits (609), Expect = 3.3e-62
Identity = 119/138 (86.23%), Postives = 126/138 (91.30%), Query Frame = 1


Query: 14  DPLNWGVAAESLKGSHLDEVKRMVEEYRRPLVKLGGETLTISQVAAIATRDFDVTVELSE 73
           DPLNWGVAAE++KGSHL+EVK MVEE+R+P+V+LGGETLTISQVAAIA R  +V VELSE
Sbjct: 23  DPLNWGVAAEAMKGSHLEEVKGMVEEFRKPVVRLGGETLTISQVAAIAVRGSEVAVELSE 82

Query: 74  SARAGVKASSDWVMESMKKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNG 133
           SAR GVKASSDWVMESM KGTDSYGVTTGFGATSHRRTK GGALQKELIRFLNAGIFGNG
Sbjct: 83  SAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKEGGALQKELIRFLNAGIFGNG 142

Query: 134 AESCHTLSRSATRAAMLV 152
            ESCHTL +SATRAAMLV
Sbjct: 143 TESCHTLPQSATRAAMLV 160

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BLAST of Csa6G446280 vs. Swiss-Prot
Match: PALY_TRISU (Phenylalanine ammonia-lyase OS=Trifolium subterraneum GN=PAL1 PE=3 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 1.6e-61
Identity = 121/138 (87.68%), Postives = 125/138 (90.58%), Query Frame = 1


Query: 14  DPLNWGVAAESLKGSHLDEVKRMVEEYRRPLVKLGGETLTISQVAAIATRDFDVTVELSE 73
           DPLNWGVAAE++KGSHLDEVKRMVEEYR+P+V+LGGETLTISQVAAIA  D   TVELSE
Sbjct: 35  DPLNWGVAAEAMKGSHLDEVKRMVEEYRKPVVRLGGETLTISQVAAIAAHD-GATVELSE 94

Query: 74  SARAGVKASSDWVMESMKKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNG 133
           SARAGVKASSDWVMESM KGTDSYGVTTGFGATSHRRTK GGALQKELIRFLNAGIFGNG
Sbjct: 95  SARAGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNG 154

Query: 134 AESCHTLSRSATRAAMLV 152
            ES HTL  +ATRAAMLV
Sbjct: 155 TESNHTLPHTATRAAMLV 171

[Close]

BLAST of Csa6G446280 vs. Swiss-Prot
Match: PAL2_PEA (Phenylalanine ammonia-lyase 2 OS=Pisum sativum GN=PAL2 PE=2 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 1.0e-60
Identity = 118/138 (85.51%), Postives = 124/138 (89.86%), Query Frame = 1


Query: 14  DPLNWGVAAESLKGSHLDEVKRMVEEYRRPLVKLGGETLTISQVAAIATRDFDVTVELSE 73
           DPLNWGVAAE++KGSHLDEVKRMV+EYR+P+V+LGGETLTISQVAAIA  D  V VELSE
Sbjct: 34  DPLNWGVAAEAMKGSHLDEVKRMVDEYRKPVVRLGGETLTISQVAAIAAHDHGVKVELSE 93

Query: 74  SARAGVKASSDWVMESMKKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNG 133
           SARAGVKASSDWVMESM KGTDSYGVTT  GATSHRRTK GGALQKELIRFLNAGIFGNG
Sbjct: 94  SARAGVKASSDWVMESMNKGTDSYGVTTVHGATSHRRTKQGGALQKELIRFLNAGIFGNG 153

Query: 134 AESCHTLSRSATRAAMLV 152
           +ES HTL  +ATRAAMLV
Sbjct: 154 SESTHTLPHTATRAAMLV 171

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BLAST of Csa6G446280 vs. TrEMBL
Match: A0A0A0KK77_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G446280 PE=4 SV=1)

HSP 1 Score: 332.4 bits (851), Expect = 3.1e-88
Identity = 166/166 (100.00%), Postives = 166/166 (100.00%), Query Frame = 1


Query: 1   MAPIETTCKSFTHDPLNWGVAAESLKGSHLDEVKRMVEEYRRPLVKLGGETLTISQVAAI 60
           MAPIETTCKSFTHDPLNWGVAAESLKGSHLDEVKRMVEEYRRPLVKLGGETLTISQVAAI
Sbjct: 1   MAPIETTCKSFTHDPLNWGVAAESLKGSHLDEVKRMVEEYRRPLVKLGGETLTISQVAAI 60

Query: 61  ATRDFDVTVELSESARAGVKASSDWVMESMKKGTDSYGVTTGFGATSHRRTKNGGALQKE 120
           ATRDFDVTVELSESARAGVKASSDWVMESMKKGTDSYGVTTGFGATSHRRTKNGGALQKE
Sbjct: 61  ATRDFDVTVELSESARAGVKASSDWVMESMKKGTDSYGVTTGFGATSHRRTKNGGALQKE 120

Query: 121 LIRFLNAGIFGNGAESCHTLSRSATRAAMLVTQVLDLRFWKPSPNS 167
           LIRFLNAGIFGNGAESCHTLSRSATRAAMLVTQVLDLRFWKPSPNS
Sbjct: 121 LIRFLNAGIFGNGAESCHTLSRSATRAAMLVTQVLDLRFWKPSPNS 166

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BLAST of Csa6G446280 vs. TrEMBL
Match: A0A0A0KH72_CUCSA (Phenylalanine ammonia-lyase OS=Cucumis sativus GN=Csa_6G445770 PE=3 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 1.9e-64
Identity = 129/148 (87.16%), Postives = 136/148 (91.89%), Query Frame = 1


Query: 4   IETTCKSFTHDPLNWGVAAESLKGSHLDEVKRMVEEYRRPLVKLGGETLTISQVAAIATR 63
           +E+ C S   DPLNWGVAAE+LKGSHLDEVKRMV+EYRRP+VKLGGETLTISQVAAIATR
Sbjct: 16  MESFCTSHVVDPLNWGVAAEALKGSHLDEVKRMVDEYRRPVVKLGGETLTISQVAAIATR 75

Query: 64  DFDVTVELSESARAGVKASSDWVMESMKKGTDSYGVTTGFGATSHRRTKNGGALQKELIR 123
           D DV V+L+ESARAGVKASSDWVMESM KGTDSYGVTTGFGATSHRRTK GGALQKELIR
Sbjct: 76  DNDVVVKLAESARAGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKQGGALQKELIR 135

Query: 124 FLNAGIFGNGAESCHTLSRSATRAAMLV 152
           FLNAGIFGNGAES HTL  SATRAAMLV
Sbjct: 136 FLNAGIFGNGAESNHTLPHSATRAAMLV 163

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BLAST of Csa6G446280 vs. TrEMBL
Match: A0A0A0KF39_CUCSA (Phenylalanine ammonia-lyase OS=Cucumis sativus GN=Csa_6G445760 PE=3 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 2.4e-64
Identity = 131/148 (88.51%), Postives = 137/148 (92.57%), Query Frame = 1


Query: 4   IETTCKSFTHDPLNWGVAAESLKGSHLDEVKRMVEEYRRPLVKLGGETLTISQVAAIATR 63
           +E+ C   ++DPLNWGVAAESLKGSHLDEVKRMVEEYRRPLVKLGGETLTISQVAAIATR
Sbjct: 13  VESLCIG-SNDPLNWGVAAESLKGSHLDEVKRMVEEYRRPLVKLGGETLTISQVAAIATR 72

Query: 64  DFDVTVELSESARAGVKASSDWVMESMKKGTDSYGVTTGFGATSHRRTKNGGALQKELIR 123
           D DV VELSES+RAGVKASSDWVMESM KGTDSYGVTTGFGATSHRRTK GGALQKELIR
Sbjct: 73  DTDVIVELSESSRAGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKQGGALQKELIR 132

Query: 124 FLNAGIFGNGAESCHTLSRSATRAAMLV 152
           FLNAGIFG+GAES HTL  SATRAAMLV
Sbjct: 133 FLNAGIFGSGAESDHTLPHSATRAAMLV 159

[Close]

BLAST of Csa6G446280 vs. TrEMBL
Match: A0A0A0KID7_CUCSA (Phenylalanine ammonia-lyase OS=Cucumis sativus GN=Csa_6G445750 PE=3 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 7.1e-64
Identity = 131/141 (92.91%), Postives = 132/141 (93.62%), Query Frame = 1


Query: 12  TH-DPLNWGVAAESLKGSHLDEVKRMVEEYRRPLVKLGGETLTISQVAAIATRDFDVTVE 71
           TH DPLNWGVAAESLKGSHLDEVKRMVEEYRRPLVKLGGETLTISQVAAIATRD DV VE
Sbjct: 14  THSDPLNWGVAAESLKGSHLDEVKRMVEEYRRPLVKLGGETLTISQVAAIATRDSDVIVE 73

Query: 72  LSESARAGVKASSDWVMESMKKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIF 131
           LSESAR GVKASSDWVMESM KGTDSYGVTTGFGATSHRRTK GGALQKELIRFLNAGIF
Sbjct: 74  LSESARVGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIF 133

Query: 132 GNGAESCHTLSRSATRAAMLV 152
           G+GAES HTL  SATRAAMLV
Sbjct: 134 GSGAESDHTLPHSATRAAMLV 154

[Close]

BLAST of Csa6G446280 vs. TrEMBL
Match: A0A0A0KK73_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G445740 PE=3 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 9.2e-64
Identity = 132/156 (84.62%), Postives = 139/156 (89.10%), Query Frame = 1


Query: 1   MAPIETT------CKSFTH-DPLNWGVAAESLKGSHLDEVKRMVEEYRRPLVKLGGETLT 60
           MAPI+ T      C + TH DPLNWG+AA+SLKGSHLDEVKRMV+EYRRPLVKLGGETLT
Sbjct: 1   MAPIDQTNDDSSFCTNTTHPDPLNWGLAADSLKGSHLDEVKRMVQEYRRPLVKLGGETLT 60

Query: 61  ISQVAAIATRDFDVTVELSESARAGVKASSDWVMESMKKGTDSYGVTTGFGATSHRRTKN 120
           ISQVAAIATRD DV VELSESARAGVKASSDWVMESM KGTDSYGVTTGFGATSHRRTK 
Sbjct: 61  ISQVAAIATRDTDVIVELSESARAGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKQ 120

Query: 121 GGALQKELIRFLNAGIFGNGAESCHTLSRSATRAAM 150
           GGALQKELIRFLNAGIFG+GAES HTL  SATRAA+
Sbjct: 121 GGALQKELIRFLNAGIFGSGAESDHTLPHSATRAAI 156

[Close]

BLAST of Csa6G446280 vs. TAIR10
Match: AT3G53260.1 (AT3G53260.1 phenylalanine ammonia-lyase 2)

HSP 1 Score: 226.9 bits (577), Expect = 9.4e-60
Identity = 113/138 (81.88%), Postives = 122/138 (88.41%), Query Frame = 1


Query: 14  DPLNWGVAAESLKGSHLDEVKRMVEEYRRPLVKLGGETLTISQVAAIATRDFDVTVELSE 73
           DPLNWG+AA+ +KGSHLDEVK+MVEEYRRP+V LGGETLTI QVAAI+T    V VEL+E
Sbjct: 26  DPLNWGLAADQMKGSHLDEVKKMVEEYRRPVVNLGGETLTIGQVAAISTVGGSVKVELAE 85

Query: 74  SARAGVKASSDWVMESMKKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNG 133
           ++RAGVKASSDWVMESM KGTDSYGVTTGFGATSHRRTKNG ALQ ELIRFLNAGIFGN 
Sbjct: 86  TSRAGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKNGTALQTELIRFLNAGIFGNT 145

Query: 134 AESCHTLSRSATRAAMLV 152
            E+CHTL +SATRAAMLV
Sbjct: 146 KETCHTLPQSATRAAMLV 163

[Close]

BLAST of Csa6G446280 vs. TAIR10
Match: AT2G37040.1 (AT2G37040.1 PHE ammonia lyase 1)

HSP 1 Score: 219.9 bits (559), Expect = 1.2e-57
Identity = 112/138 (81.16%), Postives = 118/138 (85.51%), Query Frame = 1


Query: 14  DPLNWGVAAESLKGSHLDEVKRMVEEYRRPLVKLGGETLTISQVAAIATRDFDVTVELSE 73
           DPLNWG AAE +KGSHLDEVKRMV E+R+P+V LGGETLTI QVAAI+T    V VELSE
Sbjct: 34  DPLNWGAAAEQMKGSHLDEVKRMVAEFRKPVVNLGGETLTIGQVAAISTIGNSVKVELSE 93

Query: 74  SARAGVKASSDWVMESMKKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNG 133
           +ARAGV ASSDWVMESM KGTDSYGVTTGFGATSHRRTKNG ALQKELIRFLNAGIFG+ 
Sbjct: 94  TARAGVNASSDWVMESMNKGTDSYGVTTGFGATSHRRTKNGVALQKELIRFLNAGIFGST 153

Query: 134 AESCHTLSRSATRAAMLV 152
            E+ HTL  SATRAAMLV
Sbjct: 154 KETSHTLPHSATRAAMLV 171

[Close]

BLAST of Csa6G446280 vs. TAIR10
Match: AT3G10340.1 (AT3G10340.1 phenylalanine ammonia-lyase 4)

HSP 1 Score: 208.4 bits (529), Expect = 3.5e-54
Identity = 107/139 (76.98%), Postives = 115/139 (82.73%), Query Frame = 1


Query: 14  DPLNWGVAAESLKGSHLDEVKRMVEEYRRPLVKLGGETLTISQVAAIATRDFDVTVELSE 73
           DPLNW   AE+LKGSHLDEVKRMV+EYR+  VKLGGETLTI QVAA+A      TVEL+E
Sbjct: 16  DPLNWNATAEALKGSHLDEVKRMVKEYRKEAVKLGGETLTIGQVAAVARGGGGSTVELAE 75

Query: 74  SARAGVKASSDWVMESMKKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNG 133
            ARAGVKASS+WVMESM +GTDSYGVTTGFGATSHRRTK GGALQ ELIRFLNAGIFG G
Sbjct: 76  EARAGVKASSEWVMESMNRGTDSYGVTTGFGATSHRRTKQGGALQNELIRFLNAGIFGPG 135

Query: 134 A-ESCHTLSRSATRAAMLV 152
           A ++ HTL +  TRAAMLV
Sbjct: 136 AGDTSHTLPKPTTRAAMLV 154

[Close]

BLAST of Csa6G446280 vs. TAIR10
Match: AT5G04230.2 (AT5G04230.2 phenyl alanine ammonia-lyase 3)

HSP 1 Score: 186.0 bits (471), Expect = 1.8e-47
Identity = 97/141 (68.79%), Postives = 112/141 (79.43%), Query Frame = 1


Query: 14  DPLNWGVAAESLKGSHLDEVKRMVEEYRRPLVKLGGETLTISQVAAIATRDFDVTVELSE 73
           DPLNW VAAE+LKGSHL+EVK+MV++YR+  V+LGGETLTI QVAA+A+     TVELSE
Sbjct: 13  DPLNWNVAAEALKGSHLEEVKKMVKDYRKGTVQLGGETLTIGQVAAVASGG--PTVELSE 72

Query: 74  SARAGVKASSDWVMESMKKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNG 133
            AR GVKASSDWVMESM + TD+YG+TTGFG++S RRT  G ALQKELIR+LNAGIF  G
Sbjct: 73  EARGGVKASSDWVMESMNRDTDTYGITTGFGSSSRRRTDQGAALQKELIRYLNAGIFATG 132

Query: 134 AES---CHTLSRSATRAAMLV 152
            E     +TL R ATRAAML+
Sbjct: 133 NEDDDRSNTLPRPATRAAMLI 151

[Close]

BLAST of Csa6G446280 vs. NCBI nr
Match: gi|700192962|gb|KGN48166.1| (hypothetical protein Csa_6G446280 [Cucumis sativus])

HSP 1 Score: 332.4 bits (851), Expect = 4.5e-88
Identity = 166/166 (100.00%), Postives = 166/166 (100.00%), Query Frame = 1


Query: 1   MAPIETTCKSFTHDPLNWGVAAESLKGSHLDEVKRMVEEYRRPLVKLGGETLTISQVAAI 60
           MAPIETTCKSFTHDPLNWGVAAESLKGSHLDEVKRMVEEYRRPLVKLGGETLTISQVAAI
Sbjct: 1   MAPIETTCKSFTHDPLNWGVAAESLKGSHLDEVKRMVEEYRRPLVKLGGETLTISQVAAI 60

Query: 61  ATRDFDVTVELSESARAGVKASSDWVMESMKKGTDSYGVTTGFGATSHRRTKNGGALQKE 120
           ATRDFDVTVELSESARAGVKASSDWVMESMKKGTDSYGVTTGFGATSHRRTKNGGALQKE
Sbjct: 61  ATRDFDVTVELSESARAGVKASSDWVMESMKKGTDSYGVTTGFGATSHRRTKNGGALQKE 120

Query: 121 LIRFLNAGIFGNGAESCHTLSRSATRAAMLVTQVLDLRFWKPSPNS 167
           LIRFLNAGIFGNGAESCHTLSRSATRAAMLVTQVLDLRFWKPSPNS
Sbjct: 121 LIRFLNAGIFGNGAESCHTLSRSATRAAMLVTQVLDLRFWKPSPNS 166

[Close]

BLAST of Csa6G446280 vs. NCBI nr
Match: gi|778722345|ref|XP_011658467.1| (PREDICTED: phenylalanine ammonia-lyase 1-like [Cucumis sativus])

HSP 1 Score: 300.4 bits (768), Expect = 1.9e-78
Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 1


Query: 1   MAPIETTCKSFTHDPLNWGVAAESLKGSHLDEVKRMVEEYRRPLVKLGGETLTISQVAAI 60
           MAPIETTCKSFTHDPLNWGVAAESLKGSHLDEVKRMVEEYRRPLVKLGGETLTISQVAAI
Sbjct: 1   MAPIETTCKSFTHDPLNWGVAAESLKGSHLDEVKRMVEEYRRPLVKLGGETLTISQVAAI 60

Query: 61  ATRDFDVTVELSESARAGVKASSDWVMESMKKGTDSYGVTTGFGATSHRRTKNGGALQKE 120
           ATRDFDVTVELSESARAGVKASSDWVMESMKKGTDSYGVTTGFGATSHRRTKNGGALQKE
Sbjct: 61  ATRDFDVTVELSESARAGVKASSDWVMESMKKGTDSYGVTTGFGATSHRRTKNGGALQKE 120

Query: 121 LIRFLNAGIFGNGAESCHTLSRSATRAAMLV 152
           LIRFLNAGIFGNGAESCHTLSRSATRAAMLV
Sbjct: 121 LIRFLNAGIFGNGAESCHTLSRSATRAAMLV 151

[Close]

BLAST of Csa6G446280 vs. NCBI nr
Match: gi|659096694|ref|XP_008449236.1| (PREDICTED: phenylalanine ammonia-lyase-like [Cucumis melo])

HSP 1 Score: 286.2 bits (731), Expect = 3.7e-74
Identity = 145/151 (96.03%), Postives = 145/151 (96.03%), Query Frame = 1


Query: 1   MAPIETTCKSFTHDPLNWGVAAESLKGSHLDEVKRMVEEYRRPLVKLGGETLTISQVAAI 60
           MAPIET CKSFTHDPLNWGVAAESLKGSHLDEVKRMVEEYRRPLVKLGGETLTISQVAAI
Sbjct: 1   MAPIETICKSFTHDPLNWGVAAESLKGSHLDEVKRMVEEYRRPLVKLGGETLTISQVAAI 60

Query: 61  ATRDFDVTVELSESARAGVKASSDWVMESMKKGTDSYGVTTGFGATSHRRTKNGGALQKE 120
           ATRD DVTVELSESARAGVKASSDWVMESM KGTDSYGVTTGFGATSHRRTK GGALQKE
Sbjct: 61  ATRDIDVTVELSESARAGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKQGGALQKE 120

Query: 121 LIRFLNAGIFGNGAESCHTLSRSATRAAMLV 152
           LIRFLNAGIFGNG ES HTLSRSATRAAMLV
Sbjct: 121 LIRFLNAGIFGNGVESSHTLSRSATRAAMLV 151

[Close]

BLAST of Csa6G446280 vs. NCBI nr
Match: gi|778722342|ref|XP_011658466.1| (PREDICTED: phenylalanine ammonia-lyase 1-like [Cucumis sativus])

HSP 1 Score: 256.5 bits (654), Expect = 3.1e-65
Identity = 139/168 (82.74%), Postives = 145/168 (86.31%), Query Frame = 1


Query: 1   MAPIETT------CKSFTH-DPLNWGVAAESLKGSHLDEVKRMVEEYRRPLVKLGGETLT 60
           MAPI+ T      C + TH DPLNWG+AA+SLKGSHLDEVKRMV+EYRRPLVKLGGETLT
Sbjct: 1   MAPIDQTNDDSSFCTNTTHPDPLNWGLAADSLKGSHLDEVKRMVQEYRRPLVKLGGETLT 60

Query: 61  ISQVAAIATRDFDVTVELSESARAGVKASSDWVMESMKKGTDSYGVTTGFGATSHRRTKN 120
           ISQVAAIATRD DV VELSESARAGVKASSDWVMESM KGTDSYGVTTGFGATSHRRTK 
Sbjct: 61  ISQVAAIATRDTDVIVELSESARAGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKQ 120

Query: 121 GGALQKELIRFLNAGIFGNGAESCHTLSRSATRAAMLV-----TQVLD 157
           GGALQKELIRFLNAGIFG+GAES HTL  SATRAAMLV      QVLD
Sbjct: 121 GGALQKELIRFLNAGIFGSGAESDHTLPHSATRAAMLVRINTLLQVLD 168

[Close]

BLAST of Csa6G446280 vs. NCBI nr
Match: gi|659096696|ref|XP_008449237.1| (PREDICTED: phenylalanine ammonia-lyase-like [Cucumis melo])

HSP 1 Score: 253.8 bits (647), Expect = 2.0e-64
Identity = 129/148 (87.16%), Postives = 136/148 (91.89%), Query Frame = 1


Query: 4   IETTCKSFTHDPLNWGVAAESLKGSHLDEVKRMVEEYRRPLVKLGGETLTISQVAAIATR 63
           +E+ C S   DPLNWGVAAE+LKGSHLDEVKRMV+EYRRP+VKLGGETLTISQVAAIATR
Sbjct: 16  MESFCTSHVVDPLNWGVAAEALKGSHLDEVKRMVDEYRRPVVKLGGETLTISQVAAIATR 75

Query: 64  DFDVTVELSESARAGVKASSDWVMESMKKGTDSYGVTTGFGATSHRRTKNGGALQKELIR 123
           D DV V+L+ESARAGVKASSDWVMESM KGTDSYGVTTGFGATSHRRTK GGALQKELIR
Sbjct: 76  DSDVVVKLAESARAGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKQGGALQKELIR 135

Query: 124 FLNAGIFGNGAESCHTLSRSATRAAMLV 152
           FLNAGIFGNGAES HTL  SATRAAMLV
Sbjct: 136 FLNAGIFGNGAESNHTLPHSATRAAMLV 163

The following BLAST results are available for this feature:

BLAST of Csa6G446280 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PAL2_POPKI	5.0e-63	86.43	Phenylalanine ammonia-lyase G2B OS=Populus kitakamiensis GN=PALG2B PE=3 SV=1	[more]
PAL1_PEA	8.6e-63	87.68	Phenylalanine ammonia-lyase 1 OS=Pisum sativum GN=PAL1 PE=2 SV=1	[more]
PALY_CAMSI	3.3e-62	86.23	Phenylalanine ammonia-lyase OS=Camellia sinensis GN=PAL PE=2 SV=1	[more]
PALY_TRISU	1.6e-61	87.68	Phenylalanine ammonia-lyase OS=Trifolium subterraneum GN=PAL1 PE=3 SV=1	[more]
PAL2_PEA	1.0e-60	85.51	Phenylalanine ammonia-lyase 2 OS=Pisum sativum GN=PAL2 PE=2 SV=1	[more]

BLAST of Csa6G446280 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KK77_CUCSA	3.1e-88	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G446280 PE=4 SV=1	[more]
A0A0A0KH72_CUCSA	1.9e-64	87.16	Phenylalanine ammonia-lyase OS=Cucumis sativus GN=Csa_6G445770 PE=3 SV=1	[more]
A0A0A0KF39_CUCSA	2.4e-64	88.51	Phenylalanine ammonia-lyase OS=Cucumis sativus GN=Csa_6G445760 PE=3 SV=1	[more]
A0A0A0KID7_CUCSA	7.1e-64	92.91	Phenylalanine ammonia-lyase OS=Cucumis sativus GN=Csa_6G445750 PE=3 SV=1	[more]
A0A0A0KK73_CUCSA	9.2e-64	84.62	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G445740 PE=3 SV=1	[more]

BLAST of Csa6G446280 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G53260.1	9.4e-60	81.88	phenylalanine ammonia-lyase 2	[more]
AT2G37040.1	1.2e-57	81.16	PHE ammonia lyase 1	[more]
AT3G10340.1	3.5e-54	76.98	phenylalanine ammonia-lyase 4	[more]
AT5G04230.2	1.8e-47	68.79	phenyl alanine ammonia-lyase 3	[more]

BLAST of Csa6G446280 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700192962\|gb\|KGN48166.1\|	4.5e-88	100.00	hypothetical protein Csa_6G446280 [Cucumis sativus]	[more]
gi\|778722345\|ref\|XP_011658467.1\|	1.9e-78	100.00	PREDICTED: phenylalanine ammonia-lyase 1-like [Cucumis sativus]	[more]
gi\|659096694\|ref\|XP_008449236.1\|	3.7e-74	96.03	PREDICTED: phenylalanine ammonia-lyase-like [Cucumis melo]	[more]
gi\|778722342\|ref\|XP_011658466.1\|	3.1e-65	82.74	PREDICTED: phenylalanine ammonia-lyase 1-like [Cucumis sativus]	[more]
gi\|659096696\|ref\|XP_008449237.1\|	2.0e-64	87.16	PREDICTED: phenylalanine ammonia-lyase-like [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001106	Aromatic_Lyase
IPR008948	L-Aspartase-like
IPR024083	Fumarase/histidase_N

Vocabulary: **Molecular Function**
Term	Definition
GO:0003824	catalytic activity

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009821	alkaloid biosynthetic process
biological_process	GO:0009800	cinnamic acid biosynthetic process
biological_process	GO:0006559	L-phenylalanine catabolic process
biological_process	GO:0006570	tyrosine metabolic process
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0045548	phenylalanine ammonia-lyase activity
molecular_function	GO:0003824	catalytic activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa6G446280.1	Csa6G446280.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001106	Aromatic amino acid lyase	PFAM	PF00221	Lyase_aromatic	coord: 52..151 score: 2.3
IPR008948	L-Aspartase-like	unknown	SSF48557	L-aspartase-like	coord: 14..151 score: 4.71
IPR024083	Fumarase/histidase, N-terminal	GENE3D	G3DSA:1.10.275.10		coord: 13..151 score: 1.3
None	No IPR available	PANTHER	PTHR10362	HISTIDINE AMMONIA-LYASE	coord: 14..151 score: 1.2E
None	No IPR available	PANTHER	PTHR10362:SF17	SUBFAMILY NOT NAMED	coord: 14..151 score: 1.2E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa6G446280	MELO3C014223.2	Melon (DHL92) v3.6.1	cumedB488
Csa6G446280	CmaCh07G009140	Cucurbita maxima (Rimu)	cmacuB878

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa6G446280	Cucurbita moschata (Rifu)	cmocuB253
Csa6G446280	Cucurbita moschata (Rifu)	cmocuB670
Csa6G446280	Cucurbita moschata (Rifu)	cmocuB828
Csa6G446280	Cucurbita moschata (Rifu)	cmocuB865
Csa6G446280	Melon (DHL92) v3.5.1	cumeB484
Csa6G446280	Melon (DHL92) v3.5.1	cumeB490
Csa6G446280	Watermelon (Charleston Gray)	cuwcgB424
Csa6G446280	Watermelon (Charleston Gray)	cuwcgB444
Csa6G446280	Watermelon (Charleston Gray)	cuwcgB464
Csa6G446280	Watermelon (97103) v1	cuwmB452
Csa6G446280	Watermelon (97103) v1	cuwmB505
Csa6G446280	Watermelon (97103) v1	cuwmB518
Csa6G446280	Cucurbita pepo (Zucchini)	cpecuB085
Csa6G446280	Cucurbita pepo (Zucchini)	cpecuB296
Csa6G446280	Cucurbita pepo (Zucchini)	cpecuB503
Csa6G446280	Cucurbita pepo (Zucchini)	cpecuB624
Csa6G446280	Bottle gourd (USVL1VR-Ls)	culsiB435
Csa6G446280	Bottle gourd (USVL1VR-Ls)	culsiB445
Csa6G446280	Cucumber (Gy14) v2	cgybcuB137
Csa6G446280	Cucumber (Gy14) v2	cgybcuB281
Csa6G446280	Cucumber (Gy14) v2	cgybcuB284
Csa6G446280	Melon (DHL92) v3.6.1	cumedB411
Csa6G446280	Melon (DHL92) v3.6.1	cumedB464
Csa6G446280	Silver-seed gourd	carcuB0181
Csa6G446280	Silver-seed gourd	carcuB0267
Csa6G446280	Silver-seed gourd	carcuB0278
Csa6G446280	Watermelon (97103) v2	cuwmbB418
Csa6G446280	Watermelon (97103) v2	cuwmbB434
Csa6G446280	Watermelon (97103) v2	cuwmbB455
Csa6G446280	Wax gourd	cuwgoB529
Csa6G446280	Wax gourd	cuwgoB629
Csa6G446280	Cucumber (Chinese Long) v2	cucuB109
Csa6G446280	Cucumber (Chinese Long) v2	cucuB168
Csa6G446280	Cucumber (Gy14) v1	cgycuB167
Csa6G446280	Cucumber (Gy14) v1	cgycuB439
Csa6G446280	Cucumber (Gy14) v1	cgycuB542
Csa6G446280	Cucurbita maxima (Rimu)	cmacuB267
Csa6G446280	Cucurbita maxima (Rimu)	cmacuB561
Csa6G446280	Cucurbita maxima (Rimu)	cmacuB681
Csa6G446280	Cucurbita maxima (Rimu)	cmacuB840