Csa6G445200 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa6G445200
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr6 : 20777385 .. 20777576 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCGATAAAAAACGGGAACGCAGCATCGACGTAACAAGCCAACAGATTAGGGGAAGAAACAAATGGAAAAGGAAAGCTGAGGTGGGACCTTCCTACACGTGGCCACTGAATGCCAAAGTGGTGAGGTCAAGTGGGACCACCCAAAGACAAGTAAATGAAGAACCGTTGATTTGGCTGACGGTGAGATGA

mRNA sequence

ATGATCGATAAAAAACGGGAACGCAGCATCGACGTAACAAGCCAACAGATTAGGGGAAGAAACAAATGGAAAAGGAAAGCTGAGGTGGGACCTTCCTACACGTGGCCACTGAATGCCAAAGTGGTGAGGTCAAGTGGGACCACCCAAAGACAAGTAAATGAAGAACCGTTGATTTGGCTGACGGTGAGATGA

Coding sequence (CDS)

ATGATCGATAAAAAACGGGAACGCAGCATCGACGTAACAAGCCAACAGATTAGGGGAAGAAACAAATGGAAAAGGAAAGCTGAGGTGGGACCTTCCTACACGTGGCCACTGAATGCCAAAGTGGTGAGGTCAAGTGGGACCACCCAAAGACAAGTAAATGAAGAACCGTTGATTTGGCTGACGGTGAGATGA

Protein sequence

MIDKKRERSIDVTSQQIRGRNKWKRKAEVGPSYTWPLNAKVVRSSGTTQRQVNEEPLIWLTVR*
Homology
[Close]
BLAST of Csa6G445200 vs. TrEMBL
Match: A0A0A0KK67_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G445200 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 4.1e-28
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 1 

Query: 1  MIDKKRERSIDVTSQQIRGRNKWKRKAEVGPSYTWPLNAKVVRSSGTTQRQVNEEPLIWL 60
          MIDKKRERSIDVTSQQIRGRNKWKRKAEVGPSYTWPLNAKVVRSSGTTQRQVNEEPLIWL
Sbjct: 1  MIDKKRERSIDVTSQQIRGRNKWKRKAEVGPSYTWPLNAKVVRSSGTTQRQVNEEPLIWL 60

Query: 61 TVR 64
          TVR
Sbjct: 61 TVR 63

[Close]
BLAST of Csa6G445200 vs. NCBI nr
Match: gi|700192952|gb|KGN48156.1| (hypothetical protein Csa_6G445200 [Cucumis sativus])

HSP 1 Score: 131.3 bits (329), Expect = 5.9e-28
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 1 

Query: 1  MIDKKRERSIDVTSQQIRGRNKWKRKAEVGPSYTWPLNAKVVRSSGTTQRQVNEEPLIWL 60
          MIDKKRERSIDVTSQQIRGRNKWKRKAEVGPSYTWPLNAKVVRSSGTTQRQVNEEPLIWL
Sbjct: 1  MIDKKRERSIDVTSQQIRGRNKWKRKAEVGPSYTWPLNAKVVRSSGTTQRQVNEEPLIWL 60

Query: 61 TVR 64
          TVR
Sbjct: 61 TVR 63

The following BLAST results are available for this feature:
BLAST of Csa6G445200 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KK67_CUCSA4.1e-28100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G445200 PE=4 SV=1[more]
BLAST of Csa6G445200 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700192952|gb|KGN48156.1|5.9e-28100.00hypothetical protein Csa_6G445200 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa6G445200.1Csa6G445200.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa6G445200ClCG04G009100Watermelon (Charleston Gray)cuwcgB464
Csa6G445200CSPI06G24410Wild cucumber (PI 183967)cpicuB313
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa6G445200Cucumber (Gy14) v2cgybcuB137
Csa6G445200Cucumber (Gy14) v2cgybcuB281
Csa6G445200Cucumber (Gy14) v2cgybcuB284
Csa6G445200Melon (DHL92) v3.6.1cumedB411
Csa6G445200Melon (DHL92) v3.6.1cumedB488
Csa6G445200Melon (DHL92) v3.6.1cumedB464
Csa6G445200Silver-seed gourdcarcuB0181
Csa6G445200Silver-seed gourdcarcuB0278
Csa6G445200Silver-seed gourdcarcuB0450
Csa6G445200Silver-seed gourdcarcuB0579
Csa6G445200Watermelon (97103) v2cuwmbB418
Csa6G445200Watermelon (97103) v2cuwmbB434
Csa6G445200Watermelon (97103) v2cuwmbB455
Csa6G445200Wax gourdcuwgoB529
Csa6G445200Wax gourdcuwgoB629
Csa6G445200Cucumber (Chinese Long) v2cucuB109
Csa6G445200Cucumber (Chinese Long) v2cucuB168
Csa6G445200Cucumber (Gy14) v1cgycuB167
Csa6G445200Cucumber (Gy14) v1cgycuB439
Csa6G445200Cucumber (Gy14) v1cgycuB542
Csa6G445200Cucurbita maxima (Rimu)cmacuB267
Csa6G445200Cucurbita maxima (Rimu)cmacuB561
Csa6G445200Cucurbita maxima (Rimu)cmacuB681
Csa6G445200Cucurbita maxima (Rimu)cmacuB840
Csa6G445200Cucurbita maxima (Rimu)cmacuB878
Csa6G445200Cucurbita moschata (Rifu)cmocuB253
Csa6G445200Cucurbita moschata (Rifu)cmocuB670
Csa6G445200Cucurbita moschata (Rifu)cmocuB828
Csa6G445200Cucurbita moschata (Rifu)cmocuB865
Csa6G445200Melon (DHL92) v3.5.1cumeB484
Csa6G445200Melon (DHL92) v3.5.1cumeB490
Csa6G445200Watermelon (Charleston Gray)cuwcgB424
Csa6G445200Watermelon (Charleston Gray)cuwcgB444
Csa6G445200Watermelon (97103) v1cuwmB452
Csa6G445200Watermelon (97103) v1cuwmB505
Csa6G445200Watermelon (97103) v1cuwmB518
Csa6G445200Cucurbita pepo (Zucchini)cpecuB085
Csa6G445200Cucurbita pepo (Zucchini)cpecuB296
Csa6G445200Cucurbita pepo (Zucchini)cpecuB503
Csa6G445200Cucurbita pepo (Zucchini)cpecuB624
Csa6G445200Bottle gourd (USVL1VR-Ls)culsiB435
Csa6G445200Bottle gourd (USVL1VR-Ls)culsiB445