Csa6G398220 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa6G398220
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr6 : 17703416 .. 17704084 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAATGGTTTCGAGCTCTGATTTCCATACCCTTTTCTCTCACATTTTCCTCTGTCTTCTCTTCTTCTCTCTTCATGTTCAACCATACACTTCCCCAAATAAGTGTATGGATCTATTTTTCATGTTCCCCATTGAATTGTTGAATGCTTGTGTAAATGCCATTGAAGTGTTTCCCATCCCACCGAACTTCATTCCAGACAAAGCTAAACTCATTCCAGGCCAAGTGGGGAAGTATTTGGTTGAACATAAAGAGAGAATTGAAGAAGAGAAGACAAGAAAATGTGAGAGAAAAGGGTATGGAAATCAGAGCTCGAAACCATTTCCATGGAAATGGTTTCGAGCTCTGATTTCCATACCCTTTTCTCTCACATTTTCTTGTCTTCTCTTCTTCTCTCTTCATGTTCAACCATACACTTCCCCAAATAAGTGTATGGATCTATTTTTCATGTTCCCCATTGAATTGTTGAATGCTTGTGTAAATGCCATTGAAGTGTTTCCCATCCCACCGAACTTCATTCCAGACAAAGCTAAACTCATTCCAGGCCAAGTGGGGAAGTATTTGGTTGAACATAAAGAGAGAATTGAAGAAGAGAAGACAAGAAAATGTGAGAGAAAAGGGTATGGAAATCAGAGCTCGAAACCATTTCCATGGAAATGGTGGGTATAG

mRNA sequence

ATGGAAATGGTTTCGAGCTCTGATTTCCATACCCTTTTCTCTCACATTTTCCTCTGTCTTCTCTTCTTCTCTCTTCATGTTCAACCATACACTTCCCCAAATAAGTGTATGGATCTATTTTTCATGTTCCCCATTGAATTGTTGAATGCTTGTGTAAATGCCATTGAAGTGTTTCCCATCCCACCGAACTTCATTCCAGACAAAGCTAAACTCATTCCAGGCCAAGTGGGGAAGTATTTGGTTGAACATAAAGAGAGAATTGAAGAAGAGAAGACAAGAAAATGTGAGAGAAAAGGGTATGGAAATCAGAGCTCGAAACCATTTCCATGGAAATGGTTTCGAGCTCTGATTTCCATACCCTTTTCTCTCACATTTTCTTGTCTTCTCTTCTTCTCTCTTCATGTTCAACCATACACTTCCCCAAATAAGTGTATGGATCTATTTTTCATGTTCCCCATTGAATTGTTGAATGCTTGTGTAAATGCCATTGAAGTGTTTCCCATCCCACCGAACTTCATTCCAGACAAAGCTAAACTCATTCCAGGCCAAGTGGGGAAGTATTTGGTTGAACATAAAGAGAGAATTGAAGAAGAGAAGACAAGAAAATGTGAGAGAAAAGGGTATGGAAATCAGAGCTCGAAACCATTTCCATGGAAATGGTGGGTATAG

Coding sequence (CDS)

ATGGAAATGGTTTCGAGCTCTGATTTCCATACCCTTTTCTCTCACATTTTCCTCTGTCTTCTCTTCTTCTCTCTTCATGTTCAACCATACACTTCCCCAAATAAGTGTATGGATCTATTTTTCATGTTCCCCATTGAATTGTTGAATGCTTGTGTAAATGCCATTGAAGTGTTTCCCATCCCACCGAACTTCATTCCAGACAAAGCTAAACTCATTCCAGGCCAAGTGGGGAAGTATTTGGTTGAACATAAAGAGAGAATTGAAGAAGAGAAGACAAGAAAATGTGAGAGAAAAGGGTATGGAAATCAGAGCTCGAAACCATTTCCATGGAAATGGTTTCGAGCTCTGATTTCCATACCCTTTTCTCTCACATTTTCTTGTCTTCTCTTCTTCTCTCTTCATGTTCAACCATACACTTCCCCAAATAAGTGTATGGATCTATTTTTCATGTTCCCCATTGAATTGTTGAATGCTTGTGTAAATGCCATTGAAGTGTTTCCCATCCCACCGAACTTCATTCCAGACAAAGCTAAACTCATTCCAGGCCAAGTGGGGAAGTATTTGGTTGAACATAAAGAGAGAATTGAAGAAGAGAAGACAAGAAAATGTGAGAGAAAAGGGTATGGAAATCAGAGCTCGAAACCATTTCCATGGAAATGGTGGGTATAG

Protein sequence

MEMVSSSDFHTLFSHIFLCLLFFSLHVQPYTSPNKCMDLFFMFPIELLNACVNAIEVFPIPPNFIPDKAKLIPGQVGKYLVEHKERIEEEKTRKCERKGYGNQSSKPFPWKWFRALISIPFSLTFSCLLFFSLHVQPYTSPNKCMDLFFMFPIELLNACVNAIEVFPIPPNFIPDKAKLIPGQVGKYLVEHKERIEEEKTRKCERKGYGNQSSKPFPWKWWV*
Homology
[Close]
BLAST of Csa6G398220 vs. TrEMBL
Match: A0A0A0KDF3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G398220 PE=4 SV=1)

HSP 1 Score: 474.6 bits (1220), Expect = 6.8e-131
Identity = 222/222 (100.00%), Postives = 222/222 (100.00%), Query Frame = 1 

Query: 1   MEMVSSSDFHTLFSHIFLCLLFFSLHVQPYTSPNKCMDLFFMFPIELLNACVNAIEVFPI 60
           MEMVSSSDFHTLFSHIFLCLLFFSLHVQPYTSPNKCMDLFFMFPIELLNACVNAIEVFPI
Sbjct: 1   MEMVSSSDFHTLFSHIFLCLLFFSLHVQPYTSPNKCMDLFFMFPIELLNACVNAIEVFPI 60

Query: 61  PPNFIPDKAKLIPGQVGKYLVEHKERIEEEKTRKCERKGYGNQSSKPFPWKWFRALISIP 120
           PPNFIPDKAKLIPGQVGKYLVEHKERIEEEKTRKCERKGYGNQSSKPFPWKWFRALISIP
Sbjct: 61  PPNFIPDKAKLIPGQVGKYLVEHKERIEEEKTRKCERKGYGNQSSKPFPWKWFRALISIP 120

Query: 121 FSLTFSCLLFFSLHVQPYTSPNKCMDLFFMFPIELLNACVNAIEVFPIPPNFIPDKAKLI 180
           FSLTFSCLLFFSLHVQPYTSPNKCMDLFFMFPIELLNACVNAIEVFPIPPNFIPDKAKLI
Sbjct: 121 FSLTFSCLLFFSLHVQPYTSPNKCMDLFFMFPIELLNACVNAIEVFPIPPNFIPDKAKLI 180

Query: 181 PGQVGKYLVEHKERIEEEKTRKCERKGYGNQSSKPFPWKWWV 223
           PGQVGKYLVEHKERIEEEKTRKCERKGYGNQSSKPFPWKWWV
Sbjct: 181 PGQVGKYLVEHKERIEEEKTRKCERKGYGNQSSKPFPWKWWV 222

[Close]
BLAST of Csa6G398220 vs. TrEMBL
Match: A0A0A0KIE5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G492240 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.3e-09
Identity = 33/35 (94.29%), Postives = 34/35 (97.14%), Query Frame = 1 

Query: 1  MEMVSSSDFHTLFSHIFLCLLFFSLHVQPYTSPNK 36
          MEMVSSSDFHTLFSHIFLCLLFFSLHVQ YTSP+K
Sbjct: 53 MEMVSSSDFHTLFSHIFLCLLFFSLHVQSYTSPDK 87

[Close]
BLAST of Csa6G398220 vs. TrEMBL
Match: A0A0A0KIE5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G492240 PE=4 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 6.0e-02
Identity = 21/23 (91.30%), Postives = 22/23 (95.65%), Query Frame = 1 

Query: 50  ACVNAIEVFPIPPNFIPDKAKLI 73
           A VNAIEVFPIPPNFIPDKAK+I
Sbjct: 230 AYVNAIEVFPIPPNFIPDKAKVI 252


HSP 2 Score: 46.2 bits (108), Expect = 6.0e-02
Identity = 21/23 (91.30%), Postives = 22/23 (95.65%), Query Frame = 1 

Query: 158 ACVNAIEVFPIPPNFIPDKAKLI 181
           A VNAIEVFPIPPNFIPDKAK+I
Sbjct: 230 AYVNAIEVFPIPPNFIPDKAKVI 252


HSP 3 Score: 40.0 bits (92), Expect = 4.3e+00
Identity = 18/23 (78.26%), Postives = 19/23 (82.61%), Query Frame = 1 

Query: 121 FSLTFSCLLFFSLHVQPYTSPNK 144
           FS  F CLLFFSLHVQ YTSP+K
Sbjct: 65  FSHIFLCLLFFSLHVQSYTSPDK 87

[Close]
BLAST of Csa6G398220 vs. NCBI nr
Match: gi|700192541|gb|KGN47745.1| (hypothetical protein Csa_6G398220 [Cucumis sativus])

HSP 1 Score: 474.6 bits (1220), Expect = 9.8e-131
Identity = 222/222 (100.00%), Postives = 222/222 (100.00%), Query Frame = 1 

Query: 1   MEMVSSSDFHTLFSHIFLCLLFFSLHVQPYTSPNKCMDLFFMFPIELLNACVNAIEVFPI 60
           MEMVSSSDFHTLFSHIFLCLLFFSLHVQPYTSPNKCMDLFFMFPIELLNACVNAIEVFPI
Sbjct: 1   MEMVSSSDFHTLFSHIFLCLLFFSLHVQPYTSPNKCMDLFFMFPIELLNACVNAIEVFPI 60

Query: 61  PPNFIPDKAKLIPGQVGKYLVEHKERIEEEKTRKCERKGYGNQSSKPFPWKWFRALISIP 120
           PPNFIPDKAKLIPGQVGKYLVEHKERIEEEKTRKCERKGYGNQSSKPFPWKWFRALISIP
Sbjct: 61  PPNFIPDKAKLIPGQVGKYLVEHKERIEEEKTRKCERKGYGNQSSKPFPWKWFRALISIP 120

Query: 121 FSLTFSCLLFFSLHVQPYTSPNKCMDLFFMFPIELLNACVNAIEVFPIPPNFIPDKAKLI 180
           FSLTFSCLLFFSLHVQPYTSPNKCMDLFFMFPIELLNACVNAIEVFPIPPNFIPDKAKLI
Sbjct: 121 FSLTFSCLLFFSLHVQPYTSPNKCMDLFFMFPIELLNACVNAIEVFPIPPNFIPDKAKLI 180

Query: 181 PGQVGKYLVEHKERIEEEKTRKCERKGYGNQSSKPFPWKWWV 223
           PGQVGKYLVEHKERIEEEKTRKCERKGYGNQSSKPFPWKWWV
Sbjct: 181 PGQVGKYLVEHKERIEEEKTRKCERKGYGNQSSKPFPWKWWV 222

[Close]
BLAST of Csa6G398220 vs. NCBI nr
Match: gi|778718521|ref|XP_011657881.1| (PREDICTED: probable receptor-like protein kinase At2g23200 [Cucumis sativus])

HSP 1 Score: 71.6 bits (174), Expect = 1.9e-09
Identity = 33/35 (94.29%), Postives = 34/35 (97.14%), Query Frame = 1 

Query: 1  MEMVSSSDFHTLFSHIFLCLLFFSLHVQPYTSPNK 36
          MEMVSSSDFHTLFSHIFLCLLFFSLHVQ YTSP+K
Sbjct: 53 MEMVSSSDFHTLFSHIFLCLLFFSLHVQSYTSPDK 87

[Close]
BLAST of Csa6G398220 vs. NCBI nr
Match: gi|778718521|ref|XP_011657881.1| (PREDICTED: probable receptor-like protein kinase At2g23200 [Cucumis sativus])

HSP 1 Score: 46.2 bits (108), Expect = 8.6e-02
Identity = 21/23 (91.30%), Postives = 22/23 (95.65%), Query Frame = 1 

Query: 50  ACVNAIEVFPIPPNFIPDKAKLI 73
           A VNAIEVFPIPPNFIPDKAK+I
Sbjct: 230 AYVNAIEVFPIPPNFIPDKAKVI 252


HSP 2 Score: 46.2 bits (108), Expect = 8.6e-02
Identity = 21/23 (91.30%), Postives = 22/23 (95.65%), Query Frame = 1 

Query: 158 ACVNAIEVFPIPPNFIPDKAKLI 181
           A VNAIEVFPIPPNFIPDKAK+I
Sbjct: 230 AYVNAIEVFPIPPNFIPDKAKVI 252


HSP 3 Score: 40.0 bits (92), Expect = 6.2e+00
Identity = 18/23 (78.26%), Postives = 19/23 (82.61%), Query Frame = 1 

Query: 121 FSLTFSCLLFFSLHVQPYTSPNK 144
           FS  F CLLFFSLHVQ YTSP+K
Sbjct: 65  FSHIFLCLLFFSLHVQSYTSPDK 87


HSP 4 Score: 71.6 bits (174), Expect = 1.9e-09
Identity = 33/35 (94.29%), Postives = 34/35 (97.14%), Query Frame = 1 

Query: 1  MEMVSSSDFHTLFSHIFLCLLFFSLHVQPYTSPNK 36
          MEMVSSSDFHTLFSHIFLCLLFFSLHVQ YTSP+K
Sbjct: 53 MEMVSSSDFHTLFSHIFLCLLFFSLHVQSYTSPDK 87

[Close]
BLAST of Csa6G398220 vs. NCBI nr
Match: gi|700193360|gb|KGN48564.1| (hypothetical protein Csa_6G492240 [Cucumis sativus])

HSP 1 Score: 46.2 bits (108), Expect = 8.6e-02
Identity = 21/23 (91.30%), Postives = 22/23 (95.65%), Query Frame = 1 

Query: 50  ACVNAIEVFPIPPNFIPDKAKLI 73
           A VNAIEVFPIPPNFIPDKAK+I
Sbjct: 230 AYVNAIEVFPIPPNFIPDKAKVI 252


HSP 2 Score: 46.2 bits (108), Expect = 8.6e-02
Identity = 21/23 (91.30%), Postives = 22/23 (95.65%), Query Frame = 1 

Query: 158 ACVNAIEVFPIPPNFIPDKAKLI 181
           A VNAIEVFPIPPNFIPDKAK+I
Sbjct: 230 AYVNAIEVFPIPPNFIPDKAKVI 252


HSP 3 Score: 40.0 bits (92), Expect = 6.2e+00
Identity = 18/23 (78.26%), Postives = 19/23 (82.61%), Query Frame = 1 

Query: 121 FSLTFSCLLFFSLHVQPYTSPNK 144
           FS  F CLLFFSLHVQ YTSP+K
Sbjct: 65  FSHIFLCLLFFSLHVQSYTSPDK 87


HSP 4 Score: 63.9 bits (154), Expect = 4.0e-07
Identity = 31/35 (88.57%), Postives = 32/35 (91.43%), Query Frame = 1 

Query: 1  MEMVSSSDFHTLFSHIFLCLLFFSLHVQPYTSPNK 36
          ME+VS SD HTLFSHIFLCLL FSLHVQPYTSPNK
Sbjct: 1  MEIVSCSDLHTLFSHIFLCLL-FSLHVQPYTSPNK 34

[Close]
BLAST of Csa6G398220 vs. NCBI nr
Match: gi|659079575|ref|XP_008440330.1| (PREDICTED: probable receptor-like protein kinase At2g23200 [Cucumis melo])

HSP 1 Score: 45.8 bits (107), Expect = 1.1e-01
Identity = 20/23 (86.96%), Postives = 22/23 (95.65%), Query Frame = 1 

Query: 50  ACVNAIEVFPIPPNFIPDKAKLI 73
           A VNAIEVFP+PPNFIPDKAK+I
Sbjct: 177 AYVNAIEVFPVPPNFIPDKAKVI 199


HSP 2 Score: 45.8 bits (107), Expect = 1.1e-01
Identity = 20/23 (86.96%), Postives = 22/23 (95.65%), Query Frame = 1 

Query: 158 ACVNAIEVFPIPPNFIPDKAKLI 181
           A VNAIEVFP+PPNFIPDKAK+I
Sbjct: 177 AYVNAIEVFPVPPNFIPDKAKVI 199


HSP 3 Score: 38.1 bits (87), Expect = 2.3e+01
Identity = 19/23 (82.61%), Postives = 19/23 (82.61%), Query Frame = 1 

Query: 121 FSLTFSCLLFFSLHVQPYTSPNK 144
           FS  F CLLF SLHVQPYTSPNK
Sbjct: 13  FSHIFLCLLF-SLHVQPYTSPNK 34

The following BLAST results are available for this feature:
BLAST of Csa6G398220 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KDF3_CUCSA6.8e-131100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G398220 PE=4 SV=1[more]
A0A0A0KIE5_CUCSA1.3e-0994.29Uncharacterized protein OS=Cucumis sativus GN=Csa_6G492240 PE=4 SV=1[more]
A0A0A0KIE5_CUCSA6.0e-0291.30Uncharacterized protein OS=Cucumis sativus GN=Csa_6G492240 PE=4 SV=1[more]
BLAST of Csa6G398220 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700192541|gb|KGN47745.1|9.8e-131100.00hypothetical protein Csa_6G398220 [Cucumis sativus][more]
gi|778718521|ref|XP_011657881.1|1.9e-0994.29PREDICTED: probable receptor-like protein kinase At2g23200 [Cucumis sativus][more]
gi|778718521|ref|XP_011657881.1|8.6e-0291.30PREDICTED: probable receptor-like protein kinase At2g23200 [Cucumis sativus][more]
gi|700193360|gb|KGN48564.1|8.6e-0291.30hypothetical protein Csa_6G492240 [Cucumis sativus][more]
gi|659079575|ref|XP_008440330.1|1.1e-0186.96PREDICTED: probable receptor-like protein kinase At2g23200 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa6G398220.1Csa6G398220.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa6G398220CSPI06G20620Wild cucumber (PI 183967)cpicuB313
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa6G398220Cucumber (Gy14) v2cgybcuB281
Csa6G398220Wax gourdcuwgoB584
Csa6G398220Cucumber (Gy14) v1cgycuB051
Csa6G398220Melon (DHL92) v3.5.1cumeB477