CSPI06G20620 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI06G20620
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Unknown protein
Location	Chr6 : 18724300 .. 18724533 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCTATTTTTCATGTTCCCCATTGAAGTGTTGAATGCTTGTGTAAATGCCATTGAAGTGTTTCCCATCCCACCGAACTTCATTCCAGACAAAGCTAAACTCATTCCAGGCCAAGTGGGGAAGTATTTGGTTGAACATAAAGAGAGAATTGAAGAAGAGAAGACAAGAAAATGTGAGAGAAAAGGGTATGGAAATCAGAGCTCGAAACCATTTCCATGGAAATGGTGGGTA

mRNA sequence

ATGGATCTATTTTTCATGTTCCCCATTGAAGTGTTGAATGCTTGTGTAAATGCCATTGAAGTGTTTCCCATCCCACCGAACTTCATTCCAGACAAAGCTAAACTCATTCCAGGCCAAGTGGGGAAGTATTTGGTTGAACATAAAGAGAGAATTGAAGAAGAGAAGACAAGAAAATGTGAGAGAAAAGGGTATGGAAATCAGAGCTCGAAACCATTTCCATGGAAATGGTGGGTA

Coding sequence (CDS)

ATGGATCTATTTTTCATGTTCCCCATTGAAGTGTTGAATGCTTGTGTAAATGCCATTGAAGTGTTTCCCATCCCACCGAACTTCATTCCAGACAAAGCTAAACTCATTCCAGGCCAAGTGGGGAAGTATTTGGTTGAACATAAAGAGAGAATTGAAGAAGAGAAGACAAGAAAATGTGAGAGAAAAGGGTATGGAAATCAGAGCTCGAAACCATTTCCATGGAAATGGTGGGTA

Homology

[Close]

BLAST of CSPI06G20620 vs. TrEMBL
Match: A0A0A0KDF3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G398220 PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 4.8e-39
Identity = 77/78 (98.72%), Postives = 78/78 (100.00%), Query Frame = 1


Query: 1   MDLFFMFPIEVLNACVNAIEVFPIPPNFIPDKAKLIPGQVGKYLVEHKERIEEEKTRKCE 60
           MDLFFMFPIE+LNACVNAIEVFPIPPNFIPDKAKLIPGQVGKYLVEHKERIEEEKTRKCE
Sbjct: 145 MDLFFMFPIELLNACVNAIEVFPIPPNFIPDKAKLIPGQVGKYLVEHKERIEEEKTRKCE 204

Query: 61  RKGYGNQSSKPFPWKWWV 79
           RKGYGNQSSKPFPWKWWV
Sbjct: 205 RKGYGNQSSKPFPWKWWV 222

[Close]

BLAST of CSPI06G20620 vs. NCBI nr
Match: gi|700192541|gb|KGN47745.1| (hypothetical protein Csa_6G398220 [Cucumis sativus])

HSP 1 Score: 167.9 bits (424), Expect = 6.9e-39
Identity = 77/78 (98.72%), Postives = 78/78 (100.00%), Query Frame = 1


Query: 1   MDLFFMFPIEVLNACVNAIEVFPIPPNFIPDKAKLIPGQVGKYLVEHKERIEEEKTRKCE 60
           MDLFFMFPIE+LNACVNAIEVFPIPPNFIPDKAKLIPGQVGKYLVEHKERIEEEKTRKCE
Sbjct: 145 MDLFFMFPIELLNACVNAIEVFPIPPNFIPDKAKLIPGQVGKYLVEHKERIEEEKTRKCE 204

Query: 61  RKGYGNQSSKPFPWKWWV 79
           RKGYGNQSSKPFPWKWWV
Sbjct: 205 RKGYGNQSSKPFPWKWWV 222

The following BLAST results are available for this feature:

BLAST of CSPI06G20620 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI06G20620 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KDF3_CUCSA	4.8e-39	98.72	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G398220 PE=4 SV=1	[more]

BLAST of CSPI06G20620 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI06G20620 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700192541\|gb\|KGN47745.1\|	6.9e-39	98.72	hypothetical protein Csa_6G398220 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI06G20620.1	CSPI06G20620.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI06G20620	Csa6G398220	Cucumber (Chinese Long) v2	cpicuB313

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI06G20620	Cucumber (Gy14) v2	cgybcpiB287
CSPI06G20620	Cucumber (Chinese Long) v3	cpicucB363
CSPI06G20620	Wax gourd	cpiwgoB589
CSPI06G20620	Cucumber (Gy14) v1	cgycpiB051