Csa6G385110 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa6G385110
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	TLC domain-containing protein; contains IPR006634 (TRAM/LAG1/CLN8 homology domain)
Location	Chr6 : 17454874 .. 17458445 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCTCTCCTCTCTCCGCTCTCTTCATTTCTGTTTATGTCAATCGTCCTCTTCTCCCGCTGATACGGAACACACGATTTAGCTCCACACCGACTCCATGGCGGGTAGAACATTGTTGAAGGAGAAAAGCAGGGCATGGAGCTTCTTCTCCGCGACATTACTGCTTTGGTCAGTCTCTCTTTGGTTCGAAATTCTATTCGACCGACGATTCCGGCTGCTCTACGTCGTTTTCGGAGCTCTGTTCTACCAGTCCGCCAATTCCTCCATTAGATTACTTCTTTCCAAGGATCCTCTTTTAGTCAACACCTCCGTTTCTCTTCTTCATTCCATTATCACCTCTGCTTCAGGTTCTTTGCTGCTCTTTTACCATCTCGTTGTTTGTTTTCTCTTTTTTTTCTTCTTCTTTTAATTCTGTTTATAACTTCGCTTGTTGTTTTTAATTTTCATCATATATGACTGCCTTCCTTGCTCACTGTTTTGATTCTTTCTCTGGAAGTTACTTCTTCGTCTTGCTTAGCTTGAAGGTTTTACTGATTGAAATAAGAATCTTTATTTGCACTATAAGAAAGACTCAGAGTTGGTCTTGTTTCGTTTTTGCAAGTTCTGTGTAGTAAATTTTGTGAATTATTAGTTATTGGTGCGGTTTAGTGCGCATGCTACAGTTGGTTGTTTGAGCCAATGAACCGAGCTCAAATGAATTATTTTGGACCGCTTTTACTGTGCCAAGAATGTCAAGACTTTGTTCTTTACTCCTGTTGTATACCTTTGTCAAATTATGAAATTGAACCCCAGTTTTTAAGCTTTAGTTCTTGCATTTTCAACAATTTTTGTTGCATATATGAATTTTAGATCATGGTTGTATTTATTCCATCAGAATGTAGGGGCATATGTAGGCGTCACTCTTGAATTTATTTTGAATGACTAAGGTTATTTTGTGATGTGATTTTAAAATGGCTCTCAAACATGTCTGGCTTTGCTACCTCATATGAATTCAGTTAGAATTCACTCAATGAACTAAAACTAAGAAAAATACAGTTTAAAATTTTAAGATTAAATAAGTGCCATGCTTCCTTCCTCTCTACTTTCTTATGTCTCGAACCCCTTTTCCCTAGAGATTCTGTTTTCTTATGTTTTCATCAAGTTTAAAGAAATGTGGAAAAATAGACTGCTTTAATTTATAGACAAGAAAAGAAAGGTTGCAAATTGATAAACAGATGAAGTGTCGGAGATAAAGGATGTTTTAGGAAAAGAAAGCTTCAGTTGGTTCCCATGTAAGTCTAGGAAAAGAAATCTTAGTAACAAGACAAGCTTCGTCCATATGACCTGTATGAAGATCTCCAACCTCACTATGTCCCTAAAATCAAACAAGTCAGTTGCATTTTACCATACTACGTAAACATTTCTTCCAGATCAAGGTAGGAAATTTTCAAGCCTCCCCTGTTTTTCATTCCCTATCAAGTTTGCATGCCTTCTCTTCCTTCTTTCTGTACCAATCTCTGCATTGTATGCGTATCAATGCATAAGTGAAGGGAAAAAGATTTCACTGCTTGGTTGATGGAGAGAACAGAAACCGGGAAGATTTTGTATTCTAAAGATGCTTTGCTAAAATATTCCGTACTATTATGTGAGTAAAGGTTGTCTGCTGACCAAGAAAATGTCTCAAACTCGTTAATGATGTGAGAGATTTTCTCTTGGCCCCATTAGTAACTTCTTTGTATTGTTGAAGGTTGAGGAAATGAGGTTCAAAGCTTAAAGGTAAACTAACGATTTAATCGTAAGGTTTGAATAGATGTATTATCAATTCCTATTGTTCAAGATAGAGGAAGGCTACTTGATTGGCCTTGATTATCACATGATTTTAACCCGAAGTGCTTTGTTGGCTCACTAATTTCTAAATGTCAATAGTTTATCCTATTGTTTGGGCCATCTAGTTAAGTCGTCTTTGCAATGATTTAATTGCAGTGCTGTTTGTTTTGGTGAACCGGTGGCTGAGTTATGGTTCCGGTTCAGAGGGGATGTTTGAGCATTCACAATTGTTTGGAGGAACATGGCCGTGGGCTTTTGCAGCTTTGTGCTTCTCATGTGGATATTTTGCATATGATCAGTGGGATATGCTGCGATATGGACTATATAGTGGCTGGATTCCTGCGATCTTGGTTCATCATCTGGTTCTTCTCATTTGCTTCACGCTTGCTTTGTATAGGAATGTCACCATCAATTATCTCAATCTCACTCTCATTTGCGAGGTATGCTTTAGTTTATTCTTGTAAAATGTGCCTTGTGAATATGCTGCTCTCTTTCTTCATGTTTGTGGTTCTTTCTGGATTTAAGCATTTCTGTTACGATTACAACGTCTCCTTTGATGACTTCGACACAGGCACAAAGATGAGGTATCCAACTATTTAACGATGGTTTCAGATTTAAGTTGTTTTCAAAGGAACGTAATAGATAGATATTTTATCTAGTGCTTTTGGCTTGAACAGTCCATCTTAATCTCTTGTGGCACCCAGTTTCCTTTTTTGATCACTTTCTCAATGCACTTTCTCTCACTGAGTTCTCTTTGTATTCACCCTTTTCACATTGTTCTACTCCCTTACACAATTTCTGACGCTTTACTCTTAGTTACCCATTCCCTTACCTTATTTTTCGTTGCATATTTTCTCTCTATGTATACTTTCTGTCTGGTACATTTGTGTATTTCAAACAATATTAATTAAGTCAAAAACTTACTAAACACTTTTTAAAGTTCATGAACTAATTAGACACAAACCTCAAGAATCATTGACTAAACTTATAATTTAACCTAGTCTATTTCTACCCAATCTTTCTTACTATGTCTCTCCACTTGTCTTCTTTTTTTTACTTTTTGATCTCGTGATGTGCACACATACGGAACATGCCTTTTAGGTGGGAAATTAAACACCTTAGTTAGCAAATGATAGAGAGTGAACTTCTATGCCCGTATTGAAGGACCTTGTTAAATCATCGATTGACCCATATATTAGCTTAAACTTTTAGGTCAATCAATAATTTAATATGGTATTAGAGCAGATGGTCTAGAAGGTTATATGGTCACACTCTTGCAAACCAGATCTATTCTTAGAACAACCATAATCTATTAGAATCAAACCAAGTTTTCAGGTCACTTTTTACTTCCAGCTTTTGATACGCAGAACTAAAACTAGAATCGTTCTGATGTTCCAGATGCATTCTATCTTTCTCCATGTAAGGCGGTTGCGAAGGATGGCTGGTGTTCGTGATGCCAAGAGCATTATCGTGAAAGTTGAATGGATTCTCAACTGGCTAACATTTGTTTTCGCAAGGTTTGTTCCACACATTCTCATTACTGTCAAGCTCATCATAGATGCTTCCAAGTTTGATAAAGGCGTAGAGCTGCCACTTGCATTGTCTGGGATGGCTGGCATGAACCTGCTGAATGCTTTACTTGGTATTGATCTTTTAAACGCTGTAAAGAAAGAGAGTAATTACAAGAAAACTGATGACACTCATCATGAATGAACGAGGACTAACTTGGGTGGAAATTAACACGGAAGAAAAAATTTCATAATATCAGA

mRNA sequence

ATGGCGGGTAGAACATTGTTGAAGGAGAAAAGCAGGGCATGGAGCTTCTTCTCCGCGACATTACTGCTTTGGTCAGTCTCTCTTTGGTTCGAAATTCTATTCGACCGACGATTCCGGCTGCTCTACGTCGTTTTCGGAGCTCTGTTCTACCAGTCCGCCAATTCCTCCATTAGATTACTTCTTTCCAAGGATCCTCTTTTAGTCAACACCTCCGTTTCTCTTCTTCATTCCATTATCACCTCTGCTTCAGTGCTGTTTGTTTTGGTGAACCGGTGGCTGAGTTATGGTTCCGGTTCAGAGGGGATGTTTGAGCATTCACAATTGTTTGGAGGAACATGGCCGTGGGCTTTTGCAGCTTTGTGCTTCTCATGTGGATATTTTGCATATGATCAGTGGGATATGCTGCGATATGGACTATATAGTGGCTGGATTCCTGCGATCTTGGTTCATCATCTGGTTCTTCTCATTTGCTTCACGCTTGCTTTGTATAGGAATGTCACCATCAATTATCTCAATCTCACTCTCATTTGCGAGATGCATTCTATCTTTCTCCATGTAAGGCGGTTGCGAAGGATGGCTGGTGTTCGTGATGCCAAGAGCATTATCGTGAAAGTTGAATGGATTCTCAACTGGCTAACATTTGTTTTCGCAAGGTTTGTTCCACACATTCTCATTACTGTCAAGCTCATCATAGATGCTTCCAAGTTTGATAAAGGCGTAGAGCTGCCACTTGCATTGTCTGGGATGGCTGGCATGAACCTGCTGAATGCTTTACTTGGTATTGATCTTTTAAACGCTGTAAAGAAAGAGAGTAATTACAAGAAAACTGATGACACTCATCATGAATGA

Coding sequence (CDS)

ATGGCGGGTAGAACATTGTTGAAGGAGAAAAGCAGGGCATGGAGCTTCTTCTCCGCGACATTACTGCTTTGGTCAGTCTCTCTTTGGTTCGAAATTCTATTCGACCGACGATTCCGGCTGCTCTACGTCGTTTTCGGAGCTCTGTTCTACCAGTCCGCCAATTCCTCCATTAGATTACTTCTTTCCAAGGATCCTCTTTTAGTCAACACCTCCGTTTCTCTTCTTCATTCCATTATCACCTCTGCTTCAGTGCTGTTTGTTTTGGTGAACCGGTGGCTGAGTTATGGTTCCGGTTCAGAGGGGATGTTTGAGCATTCACAATTGTTTGGAGGAACATGGCCGTGGGCTTTTGCAGCTTTGTGCTTCTCATGTGGATATTTTGCATATGATCAGTGGGATATGCTGCGATATGGACTATATAGTGGCTGGATTCCTGCGATCTTGGTTCATCATCTGGTTCTTCTCATTTGCTTCACGCTTGCTTTGTATAGGAATGTCACCATCAATTATCTCAATCTCACTCTCATTTGCGAGATGCATTCTATCTTTCTCCATGTAAGGCGGTTGCGAAGGATGGCTGGTGTTCGTGATGCCAAGAGCATTATCGTGAAAGTTGAATGGATTCTCAACTGGCTAACATTTGTTTTCGCAAGGTTTGTTCCACACATTCTCATTACTGTCAAGCTCATCATAGATGCTTCCAAGTTTGATAAAGGCGTAGAGCTGCCACTTGCATTGTCTGGGATGGCTGGCATGAACCTGCTGAATGCTTTACTTGGTATTGATCTTTTAAACGCTGTAAAGAAAGAGAGTAATTACAAGAAAACTGATGACACTCATCATGAATGA

Protein sequence

MAGRTLLKEKSRAWSFFSATLLLWSVSLWFEILFDRRFRLLYVVFGALFYQSANSSIRLLLSKDPLLVNTSVSLLHSIITSASVLFVLVNRWLSYGSGSEGMFEHSQLFGGTWPWAFAALCFSCGYFAYDQWDMLRYGLYSGWIPAILVHHLVLLICFTLALYRNVTINYLNLTLICEMHSIFLHVRRLRRMAGVRDAKSIIVKVEWILNWLTFVFARFVPHILITVKLIIDASKFDKGVELPLALSGMAGMNLLNALLGIDLLNAVKKESNYKKTDDTHHE*

Homology

[Close]

BLAST of Csa6G385110 vs. Swiss-Prot
Match: TLCD2_DANRE (TLC domain-containing protein 2 OS=Danio rerio GN=tlcd2 PE=2 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.1e-09
Identity = 55/200 (27.50%), Postives = 97/200 (48.50%), Query Frame = 1


Query: 69  NTSVSLLHSIITSA-SVLFVLVNRWLSYGSGSEGMFEHSQLFGGTWPWAFAALCFSCGYF 128
           N S S +HS+IT   SVL   ++  ++     E + E   +F      + A +  S GYF
Sbjct: 42  NISTSFVHSLITGVWSVLCFCMHPQMA-----EDLIETHSVF------SHALVSVSIGYF 101

Query: 129 AYDQWDM-LRYGLYSGWIPAILVHHLVLLICFTLALYRNVTINYLNLTLICEMHSIFLHV 188
            YD  DM +   +   W   +L HH+V++ CF +++     + +  + L+ E++S+FLH+
Sbjct: 102 IYDFLDMVINQKIIHSW--ELLFHHVVVITCFGISVLTCRYVGFAVVALLVEINSVFLHL 161

Query: 189 RRLRRMAGVRDAKSIIVKVEWILNWLTFVFARFVPHILITVKLIIDASKFDKGVELPLAL 248
           R++ RMA +  AKS   +V  ++N  T+V  R      +T  L+++           +  
Sbjct: 162 RQVLRMANL--AKSTFYRVNSMINLGTYVVFRINTLAWMTRWLVLNRDLIPL-FSYTIGS 221

Query: 249 SGMAGMNLLNALLGIDLLNA 267
            G+A M  +N +L   L+ +
Sbjct: 222 VGLAIMTAMNIVLFYRLMRS 225

[Close]

BLAST of Csa6G385110 vs. TrEMBL
Match: A0A0A0KH54_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G385110 PE=4 SV=1)

HSP 1 Score: 569.7 bits (1467), Expect = 2.0e-159
Identity = 282/282 (100.00%), Postives = 282/282 (100.00%), Query Frame = 1


Query: 1   MAGRTLLKEKSRAWSFFSATLLLWSVSLWFEILFDRRFRLLYVVFGALFYQSANSSIRLL 60
           MAGRTLLKEKSRAWSFFSATLLLWSVSLWFEILFDRRFRLLYVVFGALFYQSANSSIRLL
Sbjct: 1   MAGRTLLKEKSRAWSFFSATLLLWSVSLWFEILFDRRFRLLYVVFGALFYQSANSSIRLL 60

Query: 61  LSKDPLLVNTSVSLLHSIITSASVLFVLVNRWLSYGSGSEGMFEHSQLFGGTWPWAFAAL 120
           LSKDPLLVNTSVSLLHSIITSASVLFVLVNRWLSYGSGSEGMFEHSQLFGGTWPWAFAAL
Sbjct: 61  LSKDPLLVNTSVSLLHSIITSASVLFVLVNRWLSYGSGSEGMFEHSQLFGGTWPWAFAAL 120

Query: 121 CFSCGYFAYDQWDMLRYGLYSGWIPAILVHHLVLLICFTLALYRNVTINYLNLTLICEMH 180
           CFSCGYFAYDQWDMLRYGLYSGWIPAILVHHLVLLICFTLALYRNVTINYLNLTLICEMH
Sbjct: 121 CFSCGYFAYDQWDMLRYGLYSGWIPAILVHHLVLLICFTLALYRNVTINYLNLTLICEMH 180

Query: 181 SIFLHVRRLRRMAGVRDAKSIIVKVEWILNWLTFVFARFVPHILITVKLIIDASKFDKGV 240
           SIFLHVRRLRRMAGVRDAKSIIVKVEWILNWLTFVFARFVPHILITVKLIIDASKFDKGV
Sbjct: 181 SIFLHVRRLRRMAGVRDAKSIIVKVEWILNWLTFVFARFVPHILITVKLIIDASKFDKGV 240

Query: 241 ELPLALSGMAGMNLLNALLGIDLLNAVKKESNYKKTDDTHHE 283
           ELPLALSGMAGMNLLNALLGIDLLNAVKKESNYKKTDDTHHE
Sbjct: 241 ELPLALSGMAGMNLLNALLGIDLLNAVKKESNYKKTDDTHHE 282

[Close]

BLAST of Csa6G385110 vs. TrEMBL
Match: W9RNY8_9ROSA (TLC domain-containing protein 2 OS=Morus notabilis GN=L484_025464 PE=4 SV=1)

HSP 1 Score: 396.7 bits (1018), Expect = 2.3e-107
Identity = 195/275 (70.91%), Postives = 226/275 (82.18%), Query Frame = 1


Query: 3   GRTLLKEKSRAWSFFSATLLLWSVSLWFEILFDRRFRLLYVVFGALFYQSANSSIRLLLS 62
           GRT  + + +  +FF ATL+LW VS+ FEILF++R  LL VV G  F+Q+AN  IR   S
Sbjct: 2   GRTAGQNEDKVGAFFVATLVLWFVSVCFEILFNKRSELLTVVAGCFFFQTANWVIRFFAS 61

Query: 63  KDPLLVNTSVSLLHSIITSASVLFVLVNRWLSYGSGSEGMFEHSQLFGGTWPWAFAALCF 122
            DPL VNTSVSLLHS ITS+SV+F+LVN+WL   SG  GMFEHSQLFGGTWPWA+AALCF
Sbjct: 62  PDPLFVNTSVSLLHSTITSSSVVFILVNQWLR--SGPSGMFEHSQLFGGTWPWAYAALCF 121

Query: 123 SCGYFAYDQWDMLRYGLYSGWIPAILVHHLVLLICFTLALYRNVTINYLNLTLICEMHSI 182
           SCGYFAYDQWDML+Y LYSG+IPAILVHHL+LLICFTLALYRNVTINYL LTL+CE+HSI
Sbjct: 122 SCGYFAYDQWDMLQYRLYSGFIPAILVHHLILLICFTLALYRNVTINYLILTLVCELHSI 181

Query: 183 FLHVRRLRRMAGVRDAKSIIVKVEWILNWLTFVFARFVPHILITVKLIIDASKFDKGVEL 242
           FLHVR++RRMAG  DA S +V++EW+LNW+TF  ARF  HILITVKLI DASKF KGVEL
Sbjct: 182 FLHVRKVRRMAGFCDATSTLVRIEWVLNWVTFFVARFASHILITVKLIWDASKFKKGVEL 241

Query: 243 PLALSGMAGMNLLNALLGIDLLNAVKKESNYKKTD 278
           PLAL GMAGMNLLN  LG DL NA ++E N + T+
Sbjct: 242 PLALFGMAGMNLLNVFLGFDLFNAFRREKNSQHTN 274

[Close]

BLAST of Csa6G385110 vs. TrEMBL
Match: M5Y9B4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009773mg PE=4 SV=1)

HSP 1 Score: 392.1 bits (1006), Expect = 5.7e-106
Identity = 193/279 (69.18%), Postives = 227/279 (81.36%), Query Frame = 1


Query: 4   RTLLKEKSRAWSFFSATLLLWSVSLWFEILFDRRFRLLYVVFGALFYQSANSSIRLLLSK 63
           RT  +++ +A  FF ATL+LW VS+ FEILF RR +LL +V G  FYQ AN  +R  +S+
Sbjct: 3   RTRAQKEDKAGPFFLATLVLWFVSVLFEILFHRRSQLLSIVAGCFFYQLANWVVRAFVSR 62

Query: 64  DPLLVNTSVSLLHSIITSASVLFVLVNRWLSYGSGSEGMFEHSQLFGGTWPWAFAALCFS 123
           DPL VNTSVSLLHS +TS+SV+F+L N+WL   +GS GMFEHSQLFGGTWPWA+ ALCFS
Sbjct: 63  DPLFVNTSVSLLHSTLTSSSVIFILANQWLK--NGSIGMFEHSQLFGGTWPWAYPALCFS 122

Query: 124 CGYFAYDQWDMLRYGLYSGWIPAILVHHLVLLICFTLALYRNVTINYLNLTLICEMHSIF 183
           CGYFAYDQWDML YGLYSGWIP+IL+HHL+LLICFTLALYRNVTINYL LTLICE+HSIF
Sbjct: 123 CGYFAYDQWDMLHYGLYSGWIPSILMHHLILLICFTLALYRNVTINYLILTLICELHSIF 182

Query: 184 LHVRRLRRMAGVRDAKSIIVKVEWILNWLTFVFARFVPHILITVKLIIDASKFDKGVELP 243
           LHVR++RRMAGVRDAKS IV  EW+LN +T++ AR   H+LIT KLI DA KF KG+ELP
Sbjct: 183 LHVRKVRRMAGVRDAKSKIVMAEWVLNLVTYIVARAGAHLLITAKLIWDAPKFGKGIELP 242

Query: 244 LALSGMAGMNLLNALLGIDLLNAVKKESNYKKTDDTHHE 283
           LAL GM GMN LNA LGIDL  A K+E N + T ++HHE
Sbjct: 243 LALFGMFGMNFLNAFLGIDLFRAFKRERNPQNT-NSHHE 278

[Close]

BLAST of Csa6G385110 vs. TrEMBL
Match: V4T7I8_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10001495mg PE=4 SV=1)

HSP 1 Score: 387.1 bits (993), Expect = 1.8e-104
Identity = 189/272 (69.49%), Postives = 225/272 (82.72%), Query Frame = 1


Query: 5   TLLKEKSRAWSFFSATLLLWSVSLWFEILFDRRFRLLYVVFGALFYQSANSSIRLLLSKD 64
           T   +K++   FF ATLLLWSVS+ FEI F++R  LL++V GA F+Q AN  IRLL+S+D
Sbjct: 106 TKQSDKNKVGVFFLATLLLWSVSVLFEIAFNKRKELLFIVAGACFFQIANWVIRLLVSRD 165

Query: 65  PLLVNTSVSLLHSIITSASVLFVLVNRWLSYGSGSEGMFEHSQLFGGTWPWAFAALCFSC 124
           PL VNTSVSLLHS ITS SV+F++VN+WL   +G  GMFEHS+L G  W WA+ ALCFSC
Sbjct: 166 PLFVNTSVSLLHSTITSVSVVFIVVNQWLR--NGLNGMFEHSELVGSAWLWAYPALCFSC 225

Query: 125 GYFAYDQWDMLRYGLYSGWIPAILVHHLVLLICFTLALYRNVTINYLNLTLICEMHSIFL 184
           GYFAYDQWDML+Y LYSG IP ILVHHL+LL+CFTLALYRNVTINYL LTLICE+HSIFL
Sbjct: 226 GYFAYDQWDMLQYRLYSGLIPGILVHHLLLLVCFTLALYRNVTINYLILTLICELHSIFL 285

Query: 185 HVRRLRRMAGVRDAKSIIVKVEWILNWLTFVFARFVPHILITVKLIIDASKFDKGVELPL 244
           HVR++RRMAG+RD+KS IV+VEW+LNW+TF  AR   H+LIT+KLI DASKF+KG+ELPL
Sbjct: 286 HVRKVRRMAGIRDSKSRIVRVEWVLNWITFFLARIASHLLITIKLIRDASKFEKGIELPL 345

Query: 245 ALSGMAGMNLLNALLGIDLLNAVKKESNYKKT 277
           AL GMAGMNLLN  LGIDL NA K+E N ++T
Sbjct: 346 ALFGMAGMNLLNISLGIDLFNAFKREKNPQQT 375

[Close]

BLAST of Csa6G385110 vs. TrEMBL
Match: A0A067GLX8_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g023487mg PE=4 SV=1)

HSP 1 Score: 387.1 bits (993), Expect = 1.8e-104
Identity = 189/272 (69.49%), Postives = 225/272 (82.72%), Query Frame = 1


Query: 5   TLLKEKSRAWSFFSATLLLWSVSLWFEILFDRRFRLLYVVFGALFYQSANSSIRLLLSKD 64
           T   +K++   FF ATLLLWSVS+ FEI F++R  LL++V GA F+Q AN  IRLL+S+D
Sbjct: 6   TKQSDKNKVGVFFLATLLLWSVSVLFEIAFNKRKELLFIVAGACFFQIANWVIRLLVSRD 65

Query: 65  PLLVNTSVSLLHSIITSASVLFVLVNRWLSYGSGSEGMFEHSQLFGGTWPWAFAALCFSC 124
           PL VNTSVSLLHS ITS SV+F++VN+WL   +G  GMFEHS+L G  W WA+ ALCFSC
Sbjct: 66  PLFVNTSVSLLHSTITSVSVVFIVVNQWLR--NGLNGMFEHSELVGSAWLWAYPALCFSC 125

Query: 125 GYFAYDQWDMLRYGLYSGWIPAILVHHLVLLICFTLALYRNVTINYLNLTLICEMHSIFL 184
           GYFAYDQWDML+Y LYSG IP ILVHHL+LL+CFTLALYRNVTINYL LTLICE+HSIFL
Sbjct: 126 GYFAYDQWDMLQYRLYSGLIPGILVHHLLLLVCFTLALYRNVTINYLILTLICELHSIFL 185

Query: 185 HVRRLRRMAGVRDAKSIIVKVEWILNWLTFVFARFVPHILITVKLIIDASKFDKGVELPL 244
           HVR++RRMAG+RD+KS IV+VEW+LNW+TF  AR   H+LIT+KLI DASKF+KG+ELPL
Sbjct: 186 HVRKVRRMAGIRDSKSRIVRVEWVLNWITFFLARIASHLLITIKLIRDASKFEKGIELPL 245

Query: 245 ALSGMAGMNLLNALLGIDLLNAVKKESNYKKT 277
           AL GMAGMNLLN  LGIDL NA K+E N ++T
Sbjct: 246 ALFGMAGMNLLNISLGIDLFNAFKREKNPQQT 275

[Close]

BLAST of Csa6G385110 vs. TAIR10
Match: AT1G21790.1 (AT1G21790.1 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein)

HSP 1 Score: 374.4 bits (960), Expect = 6.2e-104
Identity = 181/270 (67.04%), Postives = 221/270 (81.85%), Query Frame = 1


Query: 9   EKSRAWSFFSATLLLWSVSLWFEILFDRRFRLLYVVFGALFYQSANSSIRLLLSKDPLLV 68
           +K+ A  FF ATLLLW VS+ FEI F+ R  LL+V+ G  F+Q  N  +R  +S+DP+ V
Sbjct: 12  KKNGAGQFFLATLLLWLVSVVFEIAFNLRTELLWVICGGCFFQLMNWVVRSWISRDPIFV 71

Query: 69  NTSVSLLHSIITSASVLFVLVNRWLSYGSGSEGMFEHSQLFGGTWPWAFAALCFSCGYFA 128
           NTSVSLLHSIITSASV+F+L+N+ L+   G + MF+HS+L GGTW WA+ ALCFSCGYFA
Sbjct: 72  NTSVSLLHSIITSASVVFILLNQCLA--KGLDEMFDHSELVGGTWKWAYPALCFSCGYFA 131

Query: 129 YDQWDMLRYGLYSGWIPAILVHHLVLLICFTLALYRNVTINYLNLTLICEMHSIFLHVRR 188
           YDQWDML+Y LYSG IP+ILVHHLVLL+CFTLALYRNVTINYL LTLICEMHSIFLHVR+
Sbjct: 132 YDQWDMLQYRLYSGLIPSILVHHLVLLVCFTLALYRNVTINYLILTLICEMHSIFLHVRK 191

Query: 189 LRRMAGVRDAKSIIVKVEWILNWLTFVFARFVPHILITVKLIIDASKFDKGVELPLALSG 248
           LRRMAG+RD+ + +VK+EW+LNW  FVFAR +PHILIT+KLI DA KF KGVELPLALSG
Sbjct: 192 LRRMAGIRDSNTALVKLEWVLNWTAFVFARCIPHILITIKLIKDAHKFGKGVELPLALSG 251

Query: 249 MAGMNLLNALLGIDLLNAVKKESNYKKTDD 279
           MAGMN+LN  LG+DL +A ++E ++++  +
Sbjct: 252 MAGMNILNVGLGLDLFHAFRRERSHRRNQE 279

[Close]

BLAST of Csa6G385110 vs. NCBI nr
Match: gi|449465449|ref|XP_004150440.1| (PREDICTED: TLC domain-containing protein 2 [Cucumis sativus])

HSP 1 Score: 569.7 bits (1467), Expect = 2.8e-159
Identity = 282/282 (100.00%), Postives = 282/282 (100.00%), Query Frame = 1


Query: 1   MAGRTLLKEKSRAWSFFSATLLLWSVSLWFEILFDRRFRLLYVVFGALFYQSANSSIRLL 60
           MAGRTLLKEKSRAWSFFSATLLLWSVSLWFEILFDRRFRLLYVVFGALFYQSANSSIRLL
Sbjct: 1   MAGRTLLKEKSRAWSFFSATLLLWSVSLWFEILFDRRFRLLYVVFGALFYQSANSSIRLL 60

Query: 61  LSKDPLLVNTSVSLLHSIITSASVLFVLVNRWLSYGSGSEGMFEHSQLFGGTWPWAFAAL 120
           LSKDPLLVNTSVSLLHSIITSASVLFVLVNRWLSYGSGSEGMFEHSQLFGGTWPWAFAAL
Sbjct: 61  LSKDPLLVNTSVSLLHSIITSASVLFVLVNRWLSYGSGSEGMFEHSQLFGGTWPWAFAAL 120

Query: 121 CFSCGYFAYDQWDMLRYGLYSGWIPAILVHHLVLLICFTLALYRNVTINYLNLTLICEMH 180
           CFSCGYFAYDQWDMLRYGLYSGWIPAILVHHLVLLICFTLALYRNVTINYLNLTLICEMH
Sbjct: 121 CFSCGYFAYDQWDMLRYGLYSGWIPAILVHHLVLLICFTLALYRNVTINYLNLTLICEMH 180

Query: 181 SIFLHVRRLRRMAGVRDAKSIIVKVEWILNWLTFVFARFVPHILITVKLIIDASKFDKGV 240
           SIFLHVRRLRRMAGVRDAKSIIVKVEWILNWLTFVFARFVPHILITVKLIIDASKFDKGV
Sbjct: 181 SIFLHVRRLRRMAGVRDAKSIIVKVEWILNWLTFVFARFVPHILITVKLIIDASKFDKGV 240

Query: 241 ELPLALSGMAGMNLLNALLGIDLLNAVKKESNYKKTDDTHHE 283
           ELPLALSGMAGMNLLNALLGIDLLNAVKKESNYKKTDDTHHE
Sbjct: 241 ELPLALSGMAGMNLLNALLGIDLLNAVKKESNYKKTDDTHHE 282

[Close]

BLAST of Csa6G385110 vs. NCBI nr
Match: gi|659133401|ref|XP_008466713.1| (PREDICTED: TLC domain-containing protein 2 [Cucumis melo])

HSP 1 Score: 547.0 bits (1408), Expect = 2.0e-152
Identity = 270/282 (95.74%), Postives = 276/282 (97.87%), Query Frame = 1


Query: 1   MAGRTLLKEKSRAWSFFSATLLLWSVSLWFEILFDRRFRLLYVVFGALFYQSANSSIRLL 60
           MAGRTLLKEKSRA SFFSATLLLWSVSLWFEILFDRRFRLLYVVFGALFYQSANSSIR+L
Sbjct: 1   MAGRTLLKEKSRAGSFFSATLLLWSVSLWFEILFDRRFRLLYVVFGALFYQSANSSIRVL 60

Query: 61  LSKDPLLVNTSVSLLHSIITSASVLFVLVNRWLSYGSGSEGMFEHSQLFGGTWPWAFAAL 120
           +SKDPLLVNTSVSLLHSI+TSASVLFVLVNRWLSY S SEGMFEHSQLFGGTWPWA+AAL
Sbjct: 61  VSKDPLLVNTSVSLLHSIVTSASVLFVLVNRWLSYDSSSEGMFEHSQLFGGTWPWAYAAL 120

Query: 121 CFSCGYFAYDQWDMLRYGLYSGWIPAILVHHLVLLICFTLALYRNVTINYLNLTLICEMH 180
           CFSCGYFAYDQWDMLRYGLYSGWIPAILVHHLVLLICFTLALYRNVTINYL LTL+CEMH
Sbjct: 121 CFSCGYFAYDQWDMLRYGLYSGWIPAILVHHLVLLICFTLALYRNVTINYLILTLVCEMH 180

Query: 181 SIFLHVRRLRRMAGVRDAKSIIVKVEWILNWLTFVFARFVPHILITVKLIIDASKFDKGV 240
           SIFLHVRRLRRMAGVRDAKSIIVKVEWILNWLTFVFARFVPHILITVKLIIDA KFDKGV
Sbjct: 181 SIFLHVRRLRRMAGVRDAKSIIVKVEWILNWLTFVFARFVPHILITVKLIIDAYKFDKGV 240

Query: 241 ELPLALSGMAGMNLLNALLGIDLLNAVKKESNYKKTDDTHHE 283
           ELPLALSGM GMNLLNALLGIDLLNAV+KESNYKKTDDTHHE
Sbjct: 241 ELPLALSGMTGMNLLNALLGIDLLNAVRKESNYKKTDDTHHE 282

[Close]

BLAST of Csa6G385110 vs. NCBI nr
Match: gi|1009136711|ref|XP_015885671.1| (PREDICTED: TLC domain-containing protein 2 [Ziziphus jujuba])

HSP 1 Score: 407.9 bits (1047), Expect = 1.4e-110
Identity = 196/269 (72.86%), Postives = 227/269 (84.39%), Query Frame = 1


Query: 4   RTLLKEKSRAWSFFSATLLLWSVSLWFEILFDRRFRLLYVVFGALFYQSANSSIRLLLSK 63
           RT  + + RA +FF ATL+LW VS+WFEILF RR++LL +V G  F+QSAN  IR   S+
Sbjct: 3   RTAARNQDRAGTFFLATLVLWFVSVWFEILFSRRYQLLSIVAGCCFFQSANWVIRRFASR 62

Query: 64  DPLLVNTSVSLLHSIITSASVLFVLVNRWLSYGSGSEGMFEHSQLFGGTWPWAFAALCFS 123
           DPL VNTSVSLLHS ITSASV+ +LVN+WL   +GS  MFEHS+LFGGTWPWA+ ALCFS
Sbjct: 63  DPLFVNTSVSLLHSTITSASVVLILVNQWLR--NGSTRMFEHSELFGGTWPWAYPALCFS 122

Query: 124 CGYFAYDQWDMLRYGLYSGWIPAILVHHLVLLICFTLALYRNVTINYLNLTLICEMHSIF 183
           CGYFAYDQWDML+Y LY+GWIP+IL+HHL+LLICFTLALYRNVTINYL LTLICE+HSIF
Sbjct: 123 CGYFAYDQWDMLQYRLYNGWIPSILLHHLILLICFTLALYRNVTINYLILTLICELHSIF 182

Query: 184 LHVRRLRRMAGVRDAKSIIVKVEWILNWLTFVFARFVPHILITVKLIIDASKFDKGVELP 243
           LH+R++RRM GVRDAKSIIVKVEWILNWLTF+ ARF  H+LIT KLI+DA  F KGVELP
Sbjct: 183 LHMRKVRRMTGVRDAKSIIVKVEWILNWLTFILARFTSHVLITAKLILDAPNFGKGVELP 242

Query: 244 LALSGMAGMNLLNALLGIDLLNAVKKESN 273
           LAL GMAGMNLLN  LGIDL +A ++E N
Sbjct: 243 LALFGMAGMNLLNVFLGIDLFHAFRREKN 269

[Close]

BLAST of Csa6G385110 vs. NCBI nr
Match: gi|703129974|ref|XP_010104494.1| (TLC domain-containing protein 2 [Morus notabilis])

HSP 1 Score: 396.7 bits (1018), Expect = 3.3e-107
Identity = 195/275 (70.91%), Postives = 226/275 (82.18%), Query Frame = 1


Query: 3   GRTLLKEKSRAWSFFSATLLLWSVSLWFEILFDRRFRLLYVVFGALFYQSANSSIRLLLS 62
           GRT  + + +  +FF ATL+LW VS+ FEILF++R  LL VV G  F+Q+AN  IR   S
Sbjct: 2   GRTAGQNEDKVGAFFVATLVLWFVSVCFEILFNKRSELLTVVAGCFFFQTANWVIRFFAS 61

Query: 63  KDPLLVNTSVSLLHSIITSASVLFVLVNRWLSYGSGSEGMFEHSQLFGGTWPWAFAALCF 122
            DPL VNTSVSLLHS ITS+SV+F+LVN+WL   SG  GMFEHSQLFGGTWPWA+AALCF
Sbjct: 62  PDPLFVNTSVSLLHSTITSSSVVFILVNQWLR--SGPSGMFEHSQLFGGTWPWAYAALCF 121

Query: 123 SCGYFAYDQWDMLRYGLYSGWIPAILVHHLVLLICFTLALYRNVTINYLNLTLICEMHSI 182
           SCGYFAYDQWDML+Y LYSG+IPAILVHHL+LLICFTLALYRNVTINYL LTL+CE+HSI
Sbjct: 122 SCGYFAYDQWDMLQYRLYSGFIPAILVHHLILLICFTLALYRNVTINYLILTLVCELHSI 181

Query: 183 FLHVRRLRRMAGVRDAKSIIVKVEWILNWLTFVFARFVPHILITVKLIIDASKFDKGVEL 242
           FLHVR++RRMAG  DA S +V++EW+LNW+TF  ARF  HILITVKLI DASKF KGVEL
Sbjct: 182 FLHVRKVRRMAGFCDATSTLVRIEWVLNWVTFFVARFASHILITVKLIWDASKFKKGVEL 241

Query: 243 PLALSGMAGMNLLNALLGIDLLNAVKKESNYKKTD 278
           PLAL GMAGMNLLN  LG DL NA ++E N + T+
Sbjct: 242 PLALFGMAGMNLLNVFLGFDLFNAFRREKNSQHTN 274

[Close]

BLAST of Csa6G385110 vs. NCBI nr
Match: gi|470109165|ref|XP_004290872.1| (PREDICTED: TLC domain-containing protein 2 [Fragaria vesca subsp. vesca])

HSP 1 Score: 395.6 bits (1015), Expect = 7.4e-107
Identity = 194/275 (70.55%), Postives = 225/275 (81.82%), Query Frame = 1


Query: 3   GRTLLKEKSRAWSFFSATLLLWSVSLWFEILFDRRFRLLYVVFGALFYQSANSSIRLLLS 62
           GRT    + +A +FF ATLLLW VS+WFEILF+R+  L+Y++ G+ FYQ AN   R  +S
Sbjct: 2   GRTRPVTQDKAGAFFLATLLLWFVSVWFEILFNRKTELVYIIAGSGFYQLANCVCRRFVS 61

Query: 63  KDPLLVNTSVSLLHSIITSASVLFVLVNRWLSYGSGSEGMFEHSQLFGGTWPWAFAALCF 122
           +DPL VNT+VSLLHS ITSASV+F+LVN+WL   +GS  MFEHSQLFGGTW WA  ALCF
Sbjct: 62  RDPLFVNTTVSLLHSSITSASVVFILVNQWLQ--NGSSEMFEHSQLFGGTWAWAHQALCF 121

Query: 123 SCGYFAYDQWDMLRYGLYSGWIPAILVHHLVLLICFTLALYRNVTINYLNLTLICEMHSI 182
           SCGYFAYDQWDML YGLYSG IP+IL HHL+LLICFTLALYRNVTINYL LTLICE+HSI
Sbjct: 122 SCGYFAYDQWDMLHYGLYSGLIPSILAHHLLLLICFTLALYRNVTINYLILTLICELHSI 181

Query: 183 FLHVRRLRRMAGVRDAKSIIVKVEWILNWLTFVFARFVPHILITVKLIIDASKFDKGVEL 242
           FLHVR++RRMAGVRDAKS IVK EW+LNW+TF FAR   HILIT KLI+DA KF +GVEL
Sbjct: 182 FLHVRKIRRMAGVRDAKSNIVKAEWVLNWVTFTFARVASHILITAKLILDAHKFGRGVEL 241

Query: 243 PLALSGMAGMNLLNALLGIDLLNAVKKESNYKKTD 278
           PLAL GM GMN+LN  LGIDL +A K+E N + T+
Sbjct: 242 PLALLGMFGMNMLNTFLGIDLFHACKREINPRHTN 274

The following BLAST results are available for this feature:

BLAST of Csa6G385110 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TLCD2_DANRE	1.1e-09	27.50	TLC domain-containing protein 2 OS=Danio rerio GN=tlcd2 PE=2 SV=1	[more]

BLAST of Csa6G385110 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KH54_CUCSA	2.0e-159	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G385110 PE=4 SV=1	[more]
W9RNY8_9ROSA	2.3e-107	70.91	TLC domain-containing protein 2 OS=Morus notabilis GN=L484_025464 PE=4 SV=1	[more]
M5Y9B4_PRUPE	5.7e-106	69.18	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009773mg PE=4 SV=1	[more]
V4T7I8_9ROSI	1.8e-104	69.49	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10001495mg PE=4 SV=1	[more]
A0A067GLX8_CITSI	1.8e-104	69.49	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g023487mg PE=4 SV=1	[more]

BLAST of Csa6G385110 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G21790.1	6.2e-104	67.04	TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein	[more]

BLAST of Csa6G385110 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449465449\|ref\|XP_004150440.1\|	2.8e-159	100.00	PREDICTED: TLC domain-containing protein 2 [Cucumis sativus]	[more]
gi\|659133401\|ref\|XP_008466713.1\|	2.0e-152	95.74	PREDICTED: TLC domain-containing protein 2 [Cucumis melo]	[more]
gi\|1009136711\|ref\|XP_015885671.1\|	1.4e-110	72.86	PREDICTED: TLC domain-containing protein 2 [Ziziphus jujuba]	[more]
gi\|703129974\|ref\|XP_010104494.1\|	3.3e-107	70.91	TLC domain-containing protein 2 [Morus notabilis]	[more]
gi\|470109165\|ref\|XP_004290872.1\|	7.4e-107	70.55	PREDICTED: TLC domain-containing protein 2 [Fragaria vesca subsp. vesca]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR006634	TLC-dom

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU151098	cucumber EST collection version 3.0	transcribed_cluster
CU159984	cucumber EST collection version 3.0	transcribed_cluster
CU173497	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa6G385110.1	Csa6G385110.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU159984	CU159984	transcribed_cluster
CU151098	CU151098	transcribed_cluster
CU173497	CU173497	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006634	TRAM/LAG1/CLN8 homology domain	PFAM	PF03798	TRAM_LAG1_CLN8	coord: 69..257 score: 3.3
IPR006634	TRAM/LAG1/CLN8 homology domain	SMART	SM00724	lag1_27	coord: 62..269 score: 1.1
IPR006634	TRAM/LAG1/CLN8 homology domain	PROFILE	PS50922	TLC	coord: 62..281 score: 12
None	No IPR available	PANTHER	PTHR13439	CT120 PROTEIN	coord: 13..272 score: 3.3
None	No IPR available	PANTHER	PTHR13439:SF4	PROTEIN K12H6.6, ISOFORM B-RELATED	coord: 13..272 score: 3.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa6G385110	Cla013940	Watermelon (97103) v1	cuwmB467
Csa6G385110	MELO3C010612	Melon (DHL92) v3.5.1	cumeB477
Csa6G385110	ClCG08G005670	Watermelon (Charleston Gray)	cuwcgB506
Csa6G385110	Lsi08G004350	Bottle gourd (USVL1VR-Ls)	culsiB480
Csa6G385110	MELO3C010612.2	Melon (DHL92) v3.6.1	cumedB449
Csa6G385110	Cla97C08G148450	Watermelon (97103) v2	cuwmbB497
Csa6G385110	Bhi04G001519	Wax gourd	cuwgoB572
Csa6G385110	CSPI06G20400	Wild cucumber (PI 183967)	cpicuB313
Csa6G385110	Cucsa.188120	Cucumber (Gy14) v1	cgycuB289
Csa6G385110	CmaCh15G006770	Cucurbita maxima (Rimu)	cmacuB310
Csa6G385110	CmoCh15G006910	Cucurbita moschata (Rifu)	cmocuB298
Csa6G385110	Cp4.1LG13g04540	Cucurbita pepo (Zucchini)	cpecuB199
Csa6G385110	CsGy6G019840	Cucumber (Gy14) v2	cgybcuB281
Csa6G385110	Carg01531	Silver-seed gourd	carcuB0851

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa6G385110	Silver-seed gourd	carcuB0478
Csa6G385110	Cucurbita maxima (Rimu)	cmacuB769
Csa6G385110	Cucurbita moschata (Rifu)	cmocuB761
Csa6G385110	Cucurbita pepo (Zucchini)	cpecuB461