Csa6G376280 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa6G376280
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr6 : 17000284 .. 17000493 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTCACCCTAGGGAAAGACCTGAAGTAAGGAAAGAGGTTGTAGGGGATCCTAAAGAGGAGGAAGATTCAACGCAAAATGAATCTGACTCTAACTCTGTTATGGACAGACCTAGGAGAGTAAAGTTACATGGTCAAGAGAAAGGGGAGATTTTCACAAAAGAAGACCACAAGGAAGCAAAGAAAACCACCATGGAGATCAAGGTTTAG

mRNA sequence

ATGTTTCACCCTAGGGAAAGACCTGAAGTAAGGAAAGAGGTTGTAGGGGATCCTAAAGAGGAGGAAGATTCAACGCAAAATGAATCTGACTCTAACTCTGTTATGGACAGACCTAGGAGAGTAAAGTTACATGGTCAAGAGAAAGGGGAGATTTTCACAAAAGAAGACCACAAGGAAGCAAAGAAAACCACCATGGAGATCAAGGTTTAG

Coding sequence (CDS)

ATGTTTCACCCTAGGGAAAGACCTGAAGTAAGGAAAGAGGTTGTAGGGGATCCTAAAGAGGAGGAAGATTCAACGCAAAATGAATCTGACTCTAACTCTGTTATGGACAGACCTAGGAGAGTAAAGTTACATGGTCAAGAGAAAGGGGAGATTTTCACAAAAGAAGACCACAAGGAAGCAAAGAAAACCACCATGGAGATCAAGGTTTAG

Protein sequence

MFHPRERPEVRKEVVGDPKEEEDSTQNESDSNSVMDRPRRVKLHGQEKGEIFTKEDHKEAKKTTMEIKV*
Homology
[Close]
BLAST of Csa6G376280 vs. TrEMBL
Match: A0A0A0KH11_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G376280 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 1.1e-31
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 1 

Query: 1  MFHPRERPEVRKEVVGDPKEEEDSTQNESDSNSVMDRPRRVKLHGQEKGEIFTKEDHKEA 60
          MFHPRERPEVRKEVVGDPKEEEDSTQNESDSNSVMDRPRRVKLHGQEKGEIFTKEDHKEA
Sbjct: 1  MFHPRERPEVRKEVVGDPKEEEDSTQNESDSNSVMDRPRRVKLHGQEKGEIFTKEDHKEA 60

Query: 61 KKTTMEIKV 70
          KKTTMEIKV
Sbjct: 61 KKTTMEIKV 69

[Close]
BLAST of Csa6G376280 vs. NCBI nr
Match: gi|700192483|gb|KGN47687.1| (hypothetical protein Csa_6G376280 [Cucumis sativus])

HSP 1 Score: 143.3 bits (360), Expect = 1.6e-31
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 1 

Query: 1  MFHPRERPEVRKEVVGDPKEEEDSTQNESDSNSVMDRPRRVKLHGQEKGEIFTKEDHKEA 60
          MFHPRERPEVRKEVVGDPKEEEDSTQNESDSNSVMDRPRRVKLHGQEKGEIFTKEDHKEA
Sbjct: 1  MFHPRERPEVRKEVVGDPKEEEDSTQNESDSNSVMDRPRRVKLHGQEKGEIFTKEDHKEA 60

Query: 61 KKTTMEIKV 70
          KKTTMEIKV
Sbjct: 61 KKTTMEIKV 69

The following BLAST results are available for this feature:
BLAST of Csa6G376280 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KH11_CUCSA1.1e-31100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G376280 PE=4 SV=1[more]
BLAST of Csa6G376280 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700192483|gb|KGN47687.1|1.6e-31100.00hypothetical protein Csa_6G376280 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa6G376280.1Csa6G376280.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa6G376280CSPI06G20010Wild cucumber (PI 183967)cpicuB313
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa6G376280Watermelon (97103) v2cuwmbB497
Csa6G376280Wax gourdcuwgoB572
Csa6G376280Cucumber (Gy14) v1cgycuB466
Csa6G376280Cucurbita maxima (Rimu)cmacuB310
Csa6G376280Cucurbita maxima (Rimu)cmacuB769
Csa6G376280Cucurbita moschata (Rifu)cmocuB298
Csa6G376280Cucurbita moschata (Rifu)cmocuB761
Csa6G376280Melon (DHL92) v3.5.1cumeB473
Csa6G376280Watermelon (Charleston Gray)cuwcgB506
Csa6G376280Watermelon (97103) v1cuwmB467
Csa6G376280Cucurbita pepo (Zucchini)cpecuB199
Csa6G376280Cucurbita pepo (Zucchini)cpecuB461
Csa6G376280Bottle gourd (USVL1VR-Ls)culsiB480
Csa6G376280Cucumber (Gy14) v2cgybcuB281
Csa6G376280Melon (DHL92) v3.6.1cumedB449
Csa6G376280Silver-seed gourdcarcuB0068
Csa6G376280Silver-seed gourdcarcuB0851