CSPI06G20010 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI06G20010
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr6 : 17968949 .. 17969158 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTCACCCTAGGAAAATACCTAAAGTAAGGAAAGAGGTTGTAGGGGATCCTAAAGAGGAGGAAGATTCAACGCAAAATGAATCTGACTCTAACTCTGTTATGGACAGACCTAGGAGAGTAAAGTTACATGGTCAAGAGAAAGGGGAGATTTTCACAAAAGAAGACCACAAGGAAGCAAAGAAAACCACCATGGAGATCAAGGTTTAG

mRNA sequence

ATGTTTCACCCTAGGAAAATACCTAAAGTAAGGAAAGAGGTTGTAGGGGATCCTAAAGAGGAGGAAGATTCAACGCAAAATGAATCTGACTCTAACTCTGTTATGGACAGACCTAGGAGAGTAAAGTTACATGGTCAAGAGAAAGGGGAGATTTTCACAAAAGAAGACCACAAGGAAGCAAAGAAAACCACCATGGAGATCAAGGTTTAG

Coding sequence (CDS)

ATGTTTCACCCTAGGAAAATACCTAAAGTAAGGAAAGAGGTTGTAGGGGATCCTAAAGAGGAGGAAGATTCAACGCAAAATGAATCTGACTCTAACTCTGTTATGGACAGACCTAGGAGAGTAAAGTTACATGGTCAAGAGAAAGGGGAGATTTTCACAAAAGAAGACCACAAGGAAGCAAAGAAAACCACCATGGAGATCAAGGTTTAG
Homology
[Close]
BLAST of CSPI06G20010 vs. TrEMBL
Match: A0A0A0KH11_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G376280 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 7.6e-28
Identity = 66/69 (95.65%), Postives = 68/69 (98.55%), Query Frame = 1 

Query: 1  MFHPRKIPKVRKEVVGDPKEEEDSTQNESDSNSVMDRPRRVKLHGQEKGEIFTKEDHKEA 60
          MFHPR+ P+VRKEVVGDPKEEEDSTQNESDSNSVMDRPRRVKLHGQEKGEIFTKEDHKEA
Sbjct: 1  MFHPRERPEVRKEVVGDPKEEEDSTQNESDSNSVMDRPRRVKLHGQEKGEIFTKEDHKEA 60

Query: 61 KKTTMEIKV 70
          KKTTMEIKV
Sbjct: 61 KKTTMEIKV 69

[Close]
BLAST of CSPI06G20010 vs. NCBI nr
Match: gi|700192483|gb|KGN47687.1| (hypothetical protein Csa_6G376280 [Cucumis sativus])

HSP 1 Score: 130.6 bits (327), Expect = 1.1e-27
Identity = 66/69 (95.65%), Postives = 68/69 (98.55%), Query Frame = 1 

Query: 1  MFHPRKIPKVRKEVVGDPKEEEDSTQNESDSNSVMDRPRRVKLHGQEKGEIFTKEDHKEA 60
          MFHPR+ P+VRKEVVGDPKEEEDSTQNESDSNSVMDRPRRVKLHGQEKGEIFTKEDHKEA
Sbjct: 1  MFHPRERPEVRKEVVGDPKEEEDSTQNESDSNSVMDRPRRVKLHGQEKGEIFTKEDHKEA 60

Query: 61 KKTTMEIKV 70
          KKTTMEIKV
Sbjct: 61 KKTTMEIKV 69

The following BLAST results are available for this feature:
BLAST of CSPI06G20010 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI06G20010 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KH11_CUCSA7.6e-2895.65Uncharacterized protein OS=Cucumis sativus GN=Csa_6G376280 PE=4 SV=1[more]
BLAST of CSPI06G20010 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI06G20010 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700192483|gb|KGN47687.1|1.1e-2795.65hypothetical protein Csa_6G376280 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI06G20010.1CSPI06G20010.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI06G20010Csa6G376280Cucumber (Chinese Long) v2cpicuB313
CSPI06G20010CsaV3_6G034040Cucumber (Chinese Long) v3cpicucB363
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI06G20010Watermelon (97103) v2cpiwmbB523
CSPI06G20010Wax gourdcpiwgoB577
CSPI06G20010Cucumber (Gy14) v1cgycpiB492
CSPI06G20010Cucurbita maxima (Rimu)cmacpiB316
CSPI06G20010Cucurbita maxima (Rimu)cmacpiB779
CSPI06G20010Cucurbita moschata (Rifu)cmocpiB307
CSPI06G20010Cucurbita moschata (Rifu)cmocpiB770
CSPI06G20010Melon (DHL92) v3.5.1cpimeB466
CSPI06G20010Watermelon (Charleston Gray)cpiwcgB533
CSPI06G20010Watermelon (97103) v1cpiwmB482
CSPI06G20010Cucurbita pepo (Zucchini)cpecpiB200
CSPI06G20010Cucurbita pepo (Zucchini)cpecpiB462
CSPI06G20010Bottle gourd (USVL1VR-Ls)cpilsiB489
CSPI06G20010Melon (DHL92) v3.6.1cpimedB458
CSPI06G20010Cucumber (Gy14) v2cgybcpiB287
CSPI06G20010Silver-seed gourdcarcpiB0072
CSPI06G20010Silver-seed gourdcarcpiB0871