Csa6G366410 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa6G366410
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr6 : 16686411 .. 16688406 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCGGTATATATTTATTTCATTTAGAGGTTTCTATTTCATACACAACCGCCGACTTCAACATGTATATATGTCTATGCTATTTATGTTTAAATCATGTAATATTGATAATTTTTTTAATGTAAACACAAAAATCTTACCTATATTTTTCTCTCTCTCCTCTTTAATTTTTCTACTAAAATTATTTTATTAATAAAATGATTGAATGACTTGTACTTTAGTTATGTTAAAACAATGTAAATATTATTAAAATTTATTAAATATACATAAAAGGTAATAAAATGAAGCAAGAAATATTAAAGTCCTTCGTTTAATTCTTTATTTACAAAATCATTAAATGAAATTATGAATTCATGTTTATAATTTCATATTTTCAAAAGAAGTATGATTTGGGTGAATATTTTATCCTTTCATTGTAATTTTTTTTAGTCTTACTTTAGCCACAATTTTGTCATTCACATAGATTGAATGTGTGTGGTCATTTTCACATTAAACAAAATAAAAATTACATTTCGTTAATTAATTTTTCATTTCCTCGTTAAAAGAAAAATGTTTTGATTCCATAACGGATATTAGTTAATGCTCTATGTTATTAGGGGCTTAGGGCTACAATGTAACTTTTCTATATGTTATTTACACAACTAAATTTTTTTTTATCATACTTTATTCAGATATATATAGATTAGATGGTTAAGTTTGGATAGTATAAGCTTAAAATATTAAGAAATAGAATTTAAATGGTGAAAAATGATACATTGGAAGGATGTAAATATAAAAAAGATATAAATATGTAAATGTTGAAATGATTGTTGTTAAATTAAAAATTTTATTGTTTATTGCTATAACTAAATGGCTCATTTTCGTAGCTTTCAAGTCTCACGTGCTCCACCCTCTCCTATTTCTTTCCGTTTAGCATCTCAGTTCCGCCGCTGCCGTTCTTCGGTTCGTGCTCGTACAGCATCCTATCTAACGGCTCTGCACTGATTGGTATTCTCCCAATCTCCATCTATCTCTGTCTCCTCACTCGAATAACGAAAGAATGGAAGATTTGTATGTATTATCATGAATTTTCCAGCATCTCCCTTCTCAGTCGAAGTAATTCAATTATCTTTTAATCACAAGCACGTCCGGCGGCTATCTTTTAATTGACCGAACAACCTCAACAATATTTCTATTTTGTATATTTGTTTAACCAATGATGGTCTGAATTTACTGAATATAAAAGCCTTCCTAGTTCCTTATGCTTCATACTTGATACTCCACCCTCCATTTATTCTTCTTCTATTGCTATTATTATATTTCTATAGTTGATTGTGTCAAATTAGAGTCTGTGACTGTTTTGAATGATAGCTGGACGTGTTTCGATTGATTTTTTGTATTGAAAATGTTTATGTTTTGGTTTTGTTACTTCTGACTAATTGGAGAAGTTTTATAGCTCCATTGGTTTGGGCATGCTGTCTTTTTTCGTGTGTGTGTGTGTAAATTTCATACATCAATGAAATTTGTTTCTTATAAAAAAGATGAAAGGTTTGGATGATTTGATTTGATGATTTCTTCTGCTGAGATTGCAATTTGAAACTGTGTGTTTTGTTTGAAATGTTTATGAATGATTCGGATGCCAAATCGATGGTGTAGTTGTCTTTCCGCTTGCTAATTAAAACAAAGTAATAAAGTGTAAGTGAACTTTCTTTTGGGCCTGAATATCGAACTCGATTGGGAAAACACCAGGACGGGCCAAAGAAACAGTTGGTTGGGATGAAATGTTAATTACTAATTCTGAGGAAGTTAATGAGGTTGGACCTTAATTATTGAAAGCCAAGGATTTTTTTTATTAAATACAACTTGCTTTTCATTTTATGGATGGAGTTCAACTCTTTGTTTTTGGTGCTGTTTTTAGGTCAGTTTTTGTTTAATCTCCCAGAAATTTTTTATGAGTGAGTGTCTAGATAGCTTATGCCTACCTTGATTAATTTCAGTCAGAAAGCAGATGTATTGA

mRNA sequence

ATGCCGCTTTCAAGTCTCACGTGCTCCACCCTCTCCTATTTCTTTCCGTTTAGCATCTCAGTTCCGCCGCTGCCGTTCTTCGGTTCGTGCTCGTACAGCATCCTATCTAACGGCTCTGCACTGATTGGTATTCTCCCAATCTCCATCTATCTCTGTCTCCTCACTCGAATAACGAAAGAATGGAAGATTTGTATGTATTATCATGAATTTTCCAGCATCTCCCTTCTCAGTCGAATCAGAAAGCAGATGTATTGA

Coding sequence (CDS)

ATGCCGCTTTCAAGTCTCACGTGCTCCACCCTCTCCTATTTCTTTCCGTTTAGCATCTCAGTTCCGCCGCTGCCGTTCTTCGGTTCGTGCTCGTACAGCATCCTATCTAACGGCTCTGCACTGATTGGTATTCTCCCAATCTCCATCTATCTCTGTCTCCTCACTCGAATAACGAAAGAATGGAAGATTTGTATGTATTATCATGAATTTTCCAGCATCTCCCTTCTCAGTCGAATCAGAAAGCAGATGTATTGA

Protein sequence

MPLSSLTCSTLSYFFPFSISVPPLPFFGSCSYSILSNGSALIGILPISIYLCLLTRITKEWKICMYYHEFSSISLLSRIRKQMY*
Homology
[Close]
BLAST of Csa6G366410 vs. TrEMBL
Match: A0A0A0KDN4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G366410 PE=4 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 9.5e-41
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 1 

Query: 1  MPLSSLTCSTLSYFFPFSISVPPLPFFGSCSYSILSNGSALIGILPISIYLCLLTRITKE 60
          MPLSSLTCSTLSYFFPFSISVPPLPFFGSCSYSILSNGSALIGILPISIYLCLLTRITKE
Sbjct: 1  MPLSSLTCSTLSYFFPFSISVPPLPFFGSCSYSILSNGSALIGILPISIYLCLLTRITKE 60

Query: 61 WKICMYYHEFSSISLLSRIRKQMY 85
          WKICMYYHEFSSISLLSRIRKQMY
Sbjct: 61 WKICMYYHEFSSISLLSRIRKQMY 84

[Close]
BLAST of Csa6G366410 vs. NCBI nr
Match: gi|700192439|gb|KGN47643.1| (hypothetical protein Csa_6G366410 [Cucumis sativus])

HSP 1 Score: 173.7 bits (439), Expect = 1.4e-40
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 1 

Query: 1  MPLSSLTCSTLSYFFPFSISVPPLPFFGSCSYSILSNGSALIGILPISIYLCLLTRITKE 60
          MPLSSLTCSTLSYFFPFSISVPPLPFFGSCSYSILSNGSALIGILPISIYLCLLTRITKE
Sbjct: 1  MPLSSLTCSTLSYFFPFSISVPPLPFFGSCSYSILSNGSALIGILPISIYLCLLTRITKE 60

Query: 61 WKICMYYHEFSSISLLSRIRKQMY 85
          WKICMYYHEFSSISLLSRIRKQMY
Sbjct: 61 WKICMYYHEFSSISLLSRIRKQMY 84

The following BLAST results are available for this feature:
BLAST of Csa6G366410 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KDN4_CUCSA9.5e-41100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G366410 PE=4 SV=1[more]
BLAST of Csa6G366410 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700192439|gb|KGN47643.1|1.4e-40100.00hypothetical protein Csa_6G366410 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU158270cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa6G366410.1Csa6G366410.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU158270CU158270transcribed_cluster