Csa6G362980 (gene) Cucumber (Chinese Long) v2

NameCsa6G362980
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionRWP-RK domain-containing protein
LocationChr6 : 16394136 .. 16395296 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGCGGCGTTGTTCGACGAAGTAGAAGATCAGGATTATCCATACGAGAGTTCCATCAACGCGAACATCCTGAACTTTGGGAACGACCGAAACCCAACGCTGGATGATTTGCAGTCGACGGCGGAGCAGCCAGCGGGGTGTGGGTTTGGGAACATGGGAATGGTGGAATTACTGAGGCAGTTTAGTTATGGTAACGGGCAATATGATTCTGAAGCGGGGCCGTCCAATATTGGTGGGGAAGAGGAAGATCCTCATCAGGATGATAATTATACGAATATTCCGAGTGATGTGGAATCTAAGTTGCTTCCTATTTGGCCTCTCACTCCTCTTCCTTTTTTATGTAGTTGTTGCCAAGTTCTTCGAGAATTTCTTCATACTAATGGTATGGTTCCCTCCTCAGGAATTTTTCATCCAAATTATCTTTCAATTTTTGTTGAAACGCAGTGTGTATGATATTGTGCTCTCTCACGTTGATTTCTGAAAGATTAGGGTAATATTCTTTCGATCAAACCATTTATAAATTTTTAAGAAAATGTTCCTTTCATTTTCGTAATTTTATGAAATTTGGTATTTTTAAAATTAAGGATAGAATTGTCAGAAAATTAATTTTATTTTTTGAAACTATTAACATTGGTTAATTACGAAGAAAAAAAGTGAAAATTGTGTTTATTTAACCCTAATTTTCAGAAACTACGAGTTTAGTTTGGCAAAAATTTAGATTTGGTTTCTCTCCTTATTTCTTCTATAGAAACTTCAAATATATTAAAGAATTACTTGAATTCATTGTCAAAATTTAACAAGTTGAAATACTATTTTTAGGGCTAATTTTTATAACATAAATCAAATGATTATGGCCTAAATTGTTATTAAATAGAGCTTAATGAAACACTTAGGGGCTAATTTTTTAGGTTTTATTCTGTCAAATCTTATGTAATTAGTTTCAATTTTTTACTTTAATCCTCTAAAAATTTTAATTTTACGACCCAAAATCATTTATTATTATTATTACTATTATTTTGAATCTAAATGTTGGCAGGAGTGCACAGCAGAAAACTAGAGATTCATGGTAGGCTAGGGATGATTAGCCATGCAATATTGGAGCATAAACCCATTGTTAATGTGGATAACATAAGTCCTCAGTATCAAATGTTCGAGTAA

mRNA sequence

ATGGCGGCGGCGTTGTTCGACGAAGTAGAAGATCAGGATTATCCATACGAGAGTTCCATCAACGCGAACATCCTGAACTTTGGGAACGACCGAAACCCAACGCTGGATGATTTGCAGTCGACGGCGGAGCAGCCAGCGGGGTGTGGGTTTGGGAACATGGGAATGGTGGAATTACTGAGGCAGTTTAGTTATGGTAACGGGCAATATGATTCTGAAGCGGGGCCGTCCAATATTGGTGGGGAAGAGGAAGATCCTCATCAGGATGATAATTATACGAATATTCCGAGTGATGTGGAATCTAAGTTGCTTCCTATTTGGCCTCTCACTCCTCTTCCTTTTTTATGTAGTTGTTGCCAAGTTCTTCGAGAATTTCTTCATACTAATGGAGTGCACAGCAGAAAACTAGAGATTCATGGTAGGCTAGGGATGATTAGCCATGCAATATTGGAGCATAAACCCATTGTTAATGTGGATAACATAAGTCCTCAGTATCAAATGTTCGAGTAA

Coding sequence (CDS)

ATGGCGGCGGCGTTGTTCGACGAAGTAGAAGATCAGGATTATCCATACGAGAGTTCCATCAACGCGAACATCCTGAACTTTGGGAACGACCGAAACCCAACGCTGGATGATTTGCAGTCGACGGCGGAGCAGCCAGCGGGGTGTGGGTTTGGGAACATGGGAATGGTGGAATTACTGAGGCAGTTTAGTTATGGTAACGGGCAATATGATTCTGAAGCGGGGCCGTCCAATATTGGTGGGGAAGAGGAAGATCCTCATCAGGATGATAATTATACGAATATTCCGAGTGATGTGGAATCTAAGTTGCTTCCTATTTGGCCTCTCACTCCTCTTCCTTTTTTATGTAGTTGTTGCCAAGTTCTTCGAGAATTTCTTCATACTAATGGAGTGCACAGCAGAAAACTAGAGATTCATGGTAGGCTAGGGATGATTAGCCATGCAATATTGGAGCATAAACCCATTGTTAATGTGGATAACATAAGTCCTCAGTATCAAATGTTCGAGTAA

Protein sequence

MAAALFDEVEDQDYPYESSINANILNFGNDRNPTLDDLQSTAEQPAGCGFGNMGMVELLRQFSYGNGQYDSEAGPSNIGGEEEDPHQDDNYTNIPSDVESKLLPIWPLTPLPFLCSCCQVLREFLHTNGVHSRKLEIHGRLGMISHAILEHKPIVNVDNISPQYQMFE*
BLAST of Csa6G362980 vs. TrEMBL
Match: A0A0A0KIL1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G362980 PE=4 SV=1)

HSP 1 Score: 354.4 bits (908), Expect = 7.8e-95
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 1

Query: 1   MAAALFDEVEDQDYPYESSINANILNFGNDRNPTLDDLQSTAEQPAGCGFGNMGMVELLR 60
           MAAALFDEVEDQDYPYESSINANILNFGNDRNPTLDDLQSTAEQPAGCGFGNMGMVELLR
Sbjct: 1   MAAALFDEVEDQDYPYESSINANILNFGNDRNPTLDDLQSTAEQPAGCGFGNMGMVELLR 60

Query: 61  QFSYGNGQYDSEAGPSNIGGEEEDPHQDDNYTNIPSDVESKLLPIWPLTPLPFLCSCCQV 120
           QFSYGNGQYDSEAGPSNIGGEEEDPHQDDNYTNIPSDVESKLLPIWPLTPLPFLCSCCQV
Sbjct: 61  QFSYGNGQYDSEAGPSNIGGEEEDPHQDDNYTNIPSDVESKLLPIWPLTPLPFLCSCCQV 120

Query: 121 LREFLHTNGVHSRKLEIHGRLGMISHAILEHKPIVNVDNISPQYQMFE 169
           LREFLHTNGVHSRKLEIHGRLGMISHAILEHKPIVNVDNISPQYQMFE
Sbjct: 121 LREFLHTNGVHSRKLEIHGRLGMISHAILEHKPIVNVDNISPQYQMFE 168

BLAST of Csa6G362980 vs. TrEMBL
Match: A5AXA9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_002228 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 2.3e-17
Identity = 61/176 (34.66%), Postives = 87/176 (49.43%), Query Frame = 1

Query: 13  DYPYESSINANI-------LNFGNDRNPTLDDLQSTAEQPAGCGFGNMGMVELLRQ---- 72
           D PY    + ++       LNF +  NP L D+ S  +  +          EL       
Sbjct: 7   DVPYHDPFSFDLPLVVVEDLNFSDPPNPNLSDIPSLVKPDSNPYLIPQSSDELADNTIDP 66

Query: 73  ----FSY-----GNGQYDSEAGPSNIGGEEEDPHQDDNYTNIPSDVESKLLPIWPLTPLP 132
               F++      NG  + +  P  + GE      + +   IPS   S  LP+WPL P+P
Sbjct: 67  FKDSFAWELCDDSNGD-NPQLTPMEVHGETSS-QAETSQQQIPSFENSVPLPVWPLPPVP 126

Query: 133 FLCSCCQVLREFLHTNGVHSRKLEIHGRLGMISHAILEHKPIVNVDNISPQYQMFE 169
           + CSCCQ+LRE +HTNG ++ KLE+HGR G+ISHA+LE      VD I P + MF+
Sbjct: 127 YGCSCCQILREIIHTNGTYTTKLEVHGRPGLISHAVLE-SHYCAVDGIPPDHHMFD 179

BLAST of Csa6G362980 vs. TrEMBL
Match: A0A061G426_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_015956 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 2.8e-15
Identity = 48/112 (42.86%), Postives = 65/112 (58.04%), Query Frame = 1

Query: 58  LLRQFSYGNGQYDSEAGPSNIGGEEEDPHQDDNYTNIPSDVESKLLPIWPLTPLPFLCSC 117
           ++R F        S+AG   + G   +P + +  T   +   S  L +WP+ P+PF CSC
Sbjct: 67  VIRDFYNERNAGTSQAGFFGLSGVMNNPTEKNMGTESLNFENSMPLSVWPIEPVPFGCSC 126

Query: 118 CQVLREFLHTNGVHSRKLEIHGRLGMISHAIL-EHKPIVNVDNISPQYQMFE 169
           CQVLRE +HTNG++  KLEIHGRLG+I HAIL +     N      QYQMF+
Sbjct: 127 CQVLREIVHTNGINVTKLEIHGRLGIICHAILTDRSGSTNAVAPDHQYQMFD 178

BLAST of Csa6G362980 vs. TrEMBL
Match: B9RQU6_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0706580 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 3.0e-14
Identity = 54/150 (36.00%), Postives = 79/150 (52.67%), Query Frame = 1

Query: 15  PYESSINANILNFGNDRNPTLDDLQSTAEQPAGCGFGNMGMVE---------LLRQFSYG 74
           P+ + IN    +F  D NPTL ++    +QP    F +  +V+         +   FS  
Sbjct: 13  PHNTPINLEYFDFTLDSNPTLANIDEQPQQPTSVHFHSDDIVDPSNPFDGPMIWNNFSSN 72

Query: 75  NGQYDSEAGPS--NIGGEEEDPHQDDNY-TNIPSDVESKLLPIWPLTPLPFLCSCCQVLR 134
           N   ++EAGPS  N   E +  +  +N  +    D   + +  WP    PF C+ CQVLR
Sbjct: 73  N---NNEAGPSTQNCRNEGDAENVSENVRSRCSGDGIGRPITSWPPPFAPFQCTYCQVLR 132

Query: 135 EFLHTNGVHSRKLEIHGRLGMISHAILEHK 153
           E +HT+G  + KLEIHGRLGMI HA+LE++
Sbjct: 133 EIIHTDGNCTSKLEIHGRLGMICHAVLENR 159

BLAST of Csa6G362980 vs. TrEMBL
Match: A0A0D2R7U7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G198100 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 2.0e-13
Identity = 64/170 (37.65%), Postives = 81/170 (47.65%), Query Frame = 1

Query: 15  PYESSINANILNFGNDRNPTLDDLQSTAEQPAGCGFGNMGMVELLRQFSYGNGQYDSEAG 74
           PY+     ++L F    NPTLDD  +T E+P      +  M         GN   D    
Sbjct: 9   PYDPHCMDDVLKFLEIENPTLDDF-TTPEKPFL--HPSSPMPHCTTDQIDGN-TIDPLED 68

Query: 75  PSNIGGEEEDPHQ------DDNYTNIPSDVE-SKLLPIWPLTPLPFLCSCCQVLREFLHT 134
           P        DPH       + + T   +DV  S+ L +WP  P+P+ CSCCQ LRE LHT
Sbjct: 69  PFIRDFYNNDPHNSQLAYGNQSETVCGNDVNNSRPLSLWPTDPIPYHCSCCQSLREILHT 128

Query: 135 N---------GVHSRKLEIHGRLGMISHAILEHKPIVNVDNISPQYQMFE 169
           N         G    KLEIHGRLGMI HA+L  +P  N     P+YQMF+
Sbjct: 129 NDTFLSFVIEGFDVTKLEIHGRLGMICHAVLTVEPGSNTP--GPRYQMFD 172

BLAST of Csa6G362980 vs. NCBI nr
Match: gi|700192387|gb|KGN47591.1| (hypothetical protein Csa_6G362980 [Cucumis sativus])

HSP 1 Score: 354.4 bits (908), Expect = 1.1e-94
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 1

Query: 1   MAAALFDEVEDQDYPYESSINANILNFGNDRNPTLDDLQSTAEQPAGCGFGNMGMVELLR 60
           MAAALFDEVEDQDYPYESSINANILNFGNDRNPTLDDLQSTAEQPAGCGFGNMGMVELLR
Sbjct: 1   MAAALFDEVEDQDYPYESSINANILNFGNDRNPTLDDLQSTAEQPAGCGFGNMGMVELLR 60

Query: 61  QFSYGNGQYDSEAGPSNIGGEEEDPHQDDNYTNIPSDVESKLLPIWPLTPLPFLCSCCQV 120
           QFSYGNGQYDSEAGPSNIGGEEEDPHQDDNYTNIPSDVESKLLPIWPLTPLPFLCSCCQV
Sbjct: 61  QFSYGNGQYDSEAGPSNIGGEEEDPHQDDNYTNIPSDVESKLLPIWPLTPLPFLCSCCQV 120

Query: 121 LREFLHTNGVHSRKLEIHGRLGMISHAILEHKPIVNVDNISPQYQMFE 169
           LREFLHTNGVHSRKLEIHGRLGMISHAILEHKPIVNVDNISPQYQMFE
Sbjct: 121 LREFLHTNGVHSRKLEIHGRLGMISHAILEHKPIVNVDNISPQYQMFE 168

BLAST of Csa6G362980 vs. NCBI nr
Match: gi|778722257|ref|XP_011658444.1| (PREDICTED: protein RKD2-like [Cucumis sativus])

HSP 1 Score: 353.2 bits (905), Expect = 2.5e-94
Identity = 167/168 (99.40%), Postives = 168/168 (100.00%), Query Frame = 1

Query: 1   MAAALFDEVEDQDYPYESSINANILNFGNDRNPTLDDLQSTAEQPAGCGFGNMGMVELLR 60
           MAAALFDEVEDQDYPYESSINANILNFGNDRNPTLDDLQSTAEQPAGCGFGNMGMVELLR
Sbjct: 1   MAAALFDEVEDQDYPYESSINANILNFGNDRNPTLDDLQSTAEQPAGCGFGNMGMVELLR 60

Query: 61  QFSYGNGQYDSEAGPSNIGGEEEDPHQDDNYTNIPSDVESKLLPIWPLTPLPFLCSCCQV 120
           QFSYGNGQYDSEAGPSNIGGEEEDPHQDDNYTNIPSDVESKLLPIWPLTPLPFLCSCCQV
Sbjct: 61  QFSYGNGQYDSEAGPSNIGGEEEDPHQDDNYTNIPSDVESKLLPIWPLTPLPFLCSCCQV 120

Query: 121 LREFLHTNGVHSRKLEIHGRLGMISHAILEHKPIVNVDNISPQYQMFE 169
           LREFLHTNGVHSRKLEIHGRLGMISHAILEHKPIVNVDNISPQYQMF+
Sbjct: 121 LREFLHTNGVHSRKLEIHGRLGMISHAILEHKPIVNVDNISPQYQMFD 168

BLAST of Csa6G362980 vs. NCBI nr
Match: gi|659089471|ref|XP_008445526.1| (PREDICTED: protein RKD2-like isoform X1 [Cucumis melo])

HSP 1 Score: 330.5 bits (846), Expect = 1.7e-87
Identity = 158/168 (94.05%), Postives = 164/168 (97.62%), Query Frame = 1

Query: 1   MAAALFDEVEDQDYPYESSINANILNFGNDRNPTLDDLQSTAEQPAGCGFGNMGMVELLR 60
           MAAALFDEVEDQDYPYESSINANILNFGND+NPTL+DLQSTAEQPAG GFGNMGMVELLR
Sbjct: 12  MAAALFDEVEDQDYPYESSINANILNFGNDQNPTLEDLQSTAEQPAGHGFGNMGMVELLR 71

Query: 61  QFSYGNGQYDSEAGPSNIGGEEEDPHQDDNYTNIPSDVESKLLPIWPLTPLPFLCSCCQV 120
           +FSYG+GQYDSEAGPSNIGGEEED  QDDNY NIPSDVESKLLPIWPLTPLPFLCSCCQV
Sbjct: 72  RFSYGDGQYDSEAGPSNIGGEEEDHQQDDNYMNIPSDVESKLLPIWPLTPLPFLCSCCQV 131

Query: 121 LREFLHTNGVHSRKLEIHGRLGMISHAILEHKPIVNVDNISPQYQMFE 169
           LREFLHTNGV+SRKLEIHGRLGMISHAILEHKPIVNVDNISPQYQMF+
Sbjct: 132 LREFLHTNGVNSRKLEIHGRLGMISHAILEHKPIVNVDNISPQYQMFD 179

BLAST of Csa6G362980 vs. NCBI nr
Match: gi|659089473|ref|XP_008445527.1| (PREDICTED: uncharacterized protein LOC103488516 isoform X2 [Cucumis melo])

HSP 1 Score: 330.5 bits (846), Expect = 1.7e-87
Identity = 158/168 (94.05%), Postives = 164/168 (97.62%), Query Frame = 1

Query: 1   MAAALFDEVEDQDYPYESSINANILNFGNDRNPTLDDLQSTAEQPAGCGFGNMGMVELLR 60
           MAAALFDEVEDQDYPYESSINANILNFGND+NPTL+DLQSTAEQPAG GFGNMGMVELLR
Sbjct: 12  MAAALFDEVEDQDYPYESSINANILNFGNDQNPTLEDLQSTAEQPAGHGFGNMGMVELLR 71

Query: 61  QFSYGNGQYDSEAGPSNIGGEEEDPHQDDNYTNIPSDVESKLLPIWPLTPLPFLCSCCQV 120
           +FSYG+GQYDSEAGPSNIGGEEED  QDDNY NIPSDVESKLLPIWPLTPLPFLCSCCQV
Sbjct: 72  RFSYGDGQYDSEAGPSNIGGEEEDHQQDDNYMNIPSDVESKLLPIWPLTPLPFLCSCCQV 131

Query: 121 LREFLHTNGVHSRKLEIHGRLGMISHAILEHKPIVNVDNISPQYQMFE 169
           LREFLHTNGV+SRKLEIHGRLGMISHAILEHKPIVNVDNISPQYQMF+
Sbjct: 132 LREFLHTNGVNSRKLEIHGRLGMISHAILEHKPIVNVDNISPQYQMFD 179

BLAST of Csa6G362980 vs. NCBI nr
Match: gi|743814847|ref|XP_011019796.1| (PREDICTED: uncharacterized protein LOC105122402 [Populus euphratica])

HSP 1 Score: 100.9 bits (250), Expect = 2.2e-18
Identity = 69/187 (36.90%), Postives = 95/187 (50.80%), Query Frame = 1

Query: 15  PYESSINANILNFGNDRNPTLDDLQSTAEQP-------AGCGFGNMGMVE--------LL 74
           PY+S I+   LNF ND NP+L  L S  E         +G    N  +++        + 
Sbjct: 13  PYDSPIDYEHLNFMNDANPSLAGLSSDNEPTPAIPESFSGSANANANILDPNNPYEDPMA 72

Query: 75  RQFSYGNGQYDS-EAGPS--NIGGEEEDP-------------HQDDNYTNIPSDV--ESK 134
             F Y N +  S EAGPS  N G     P              Q  N +    ++  + +
Sbjct: 73  WNFYYENLRVQSHEAGPSHQNQGQSSSGPLPYTPFPNASFPDGQTSNASGRSEEIFLDER 132

Query: 135 LLPIWPLTPLPFLCSCCQVLREFLHTNGVHSRKLEIHGRLGMISHAILEHKPIVNVDNIS 169
            + IWP  P+PF C+CCQVLRE +HT+G ++ KLEIHGR+G+I HAILE++  V    I 
Sbjct: 133 NIAIWPPEPVPFQCTCCQVLREIIHTDGNYTTKLEIHGRMGIICHAILENRDYVKA--IH 192

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0KIL1_CUCSA7.8e-95100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G362980 PE=4 SV=1[more]
A5AXA9_VITVI2.3e-1734.66Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_002228 PE=4 SV=1[more]
A0A061G426_THECC2.8e-1542.86Uncharacterized protein OS=Theobroma cacao GN=TCM_015956 PE=4 SV=1[more]
B9RQU6_RICCO3.0e-1436.00Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0706580 PE=4 SV=1[more]
A0A0D2R7U7_GOSRA2.0e-1337.65Uncharacterized protein OS=Gossypium raimondii GN=B456_004G198100 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|700192387|gb|KGN47591.1|1.1e-94100.00hypothetical protein Csa_6G362980 [Cucumis sativus][more]
gi|778722257|ref|XP_011658444.1|2.5e-9499.40PREDICTED: protein RKD2-like [Cucumis sativus][more]
gi|659089471|ref|XP_008445526.1|1.7e-8794.05PREDICTED: protein RKD2-like isoform X1 [Cucumis melo][more]
gi|659089473|ref|XP_008445527.1|1.7e-8794.05PREDICTED: uncharacterized protein LOC103488516 isoform X2 [Cucumis melo][more]
gi|743814847|ref|XP_011019796.1|2.2e-1836.90PREDICTED: uncharacterized protein LOC105122402 [Populus euphratica][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005575 cellular_component
cellular_component GO:0005634 nucleus
molecular_function GO:0003674 molecular_function
molecular_function GO:0042393 histone binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0003677 DNA binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa6G362980.1Csa6G362980.1mRNA