Csa6G361210 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa6G361210
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr6 : 16117739 .. 16118684 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGAAGGAAAATATCATTAATGAAGAAGTTCATGAATTGGAGTCCGATGATTCCAACAATTCTCATACTTCAAATGATGAGGTTTTATTATTTTCTTTCCTCTAATTTTTCTGTTCGATCTCATATACAAGAACTTTCTTTGAAAACTTTTGTACCACTACTGCACCTTTTTTTTTCATTCTCTAAACTAGATAATATAATGGGTAGTGAGGAATTTAGCTAAATTCGGTACACCTGAACTTAAAAAGGCTTATACGTAAGTGAGATAAATATTTGAGACAAAAGTAGAAAGATATATACTTCTTTTATATATGATAGAAAGATTTTCGATCCTTTATGTGTTTGAGACGTAAATTTACTATTCTCATCTAAGAAGAAAAATAATAAACATCCTAAGAAAGAATAAAAAAAAAAATGAATATAATAAAATTTAAAGCAAATGAGATTTTTAAAATAGGGTTGATATTATATTGATTAAAGTAAAATCTTTTAACTTAACCATCTTTTGTGCATAAAAAATAGTTTAAAAAGAGGTGCTATCTTCAAATTAGTCTTCCACTATATCCTCTTTACAATTTAATTTCTCTCTTCCTACCTCTTTTCATCCATTAAATTTCTCTCAACACCAAATTATTTTTCTTGATACTTTCAAATAGGTTTACCAAATTTATGTTTACAATTTTCTATTGTATTTGTTTTCATATAGGTTTACCCAAGAAAAAGACAAAATTGTAGTCATGACTTCGTAGAGTTTGGATTTAAAAGATGCATGAGCATAAAGGGATTTAAAACATACAATAGCAGAAAGAACTATTCTCCAGCCGGCCGTGCACTTCCCGAGCGCCCTAAAAGGAAACATAAATCGGACAACAGCTTTATTGTCAAGAAAATCAGAAGCACTCGGGCAAAACTGTGTCGTTTCCTTTTTAATATTTGTTCTTAA

mRNA sequence

ATGGCGAAGGAAAATATCATTAATGAAGAAGTTCATGAATTGGAGTCCGATGATTCCAACAATTCTCATACTTCAAATGATGAGGTTTACCCAAGAAAAAGACAAAATTGTAGTCATGACTTCGTAGAGTTTGGATTTAAAAGATGCATGAGCATAAAGGGATTTAAAACATACAATAGCAGAAAGAACTATTCTCCAGCCGGCCGTGCACTTCCCGAGCGCCCTAAAAGGAAACATAAATCGGACAACAGCTTTATTGTCAAGAAAATCAGAAGCACTCGGGCAAAACTGTGTCGTTTCCTTTTTAATATTTGTTCTTAA

Coding sequence (CDS)

ATGGCGAAGGAAAATATCATTAATGAAGAAGTTCATGAATTGGAGTCCGATGATTCCAACAATTCTCATACTTCAAATGATGAGGTTTACCCAAGAAAAAGACAAAATTGTAGTCATGACTTCGTAGAGTTTGGATTTAAAAGATGCATGAGCATAAAGGGATTTAAAACATACAATAGCAGAAAGAACTATTCTCCAGCCGGCCGTGCACTTCCCGAGCGCCCTAAAAGGAAACATAAATCGGACAACAGCTTTATTGTCAAGAAAATCAGAAGCACTCGGGCAAAACTGTGTCGTTTCCTTTTTAATATTTGTTCTTAA

Protein sequence

MAKENIINEEVHELESDDSNNSHTSNDEVYPRKRQNCSHDFVEFGFKRCMSIKGFKTYNSRKNYSPAGRALPERPKRKHKSDNSFIVKKIRSTRAKLCRFLFNICS*

Homology

[Close]

BLAST of Csa6G361210 vs. TrEMBL
Match: A0A0A0KFH5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G361210 PE=4 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 1.7e-55
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 1


Query: 1   MAKENIINEEVHELESDDSNNSHTSNDEVYPRKRQNCSHDFVEFGFKRCMSIKGFKTYNS 60
           MAKENIINEEVHELESDDSNNSHTSNDEVYPRKRQNCSHDFVEFGFKRCMSIKGFKTYNS
Sbjct: 1   MAKENIINEEVHELESDDSNNSHTSNDEVYPRKRQNCSHDFVEFGFKRCMSIKGFKTYNS 60

Query: 61  RKNYSPAGRALPERPKRKHKSDNSFIVKKIRSTRAKLCRFLFNICS 107
           RKNYSPAGRALPERPKRKHKSDNSFIVKKIRSTRAKLCRFLFNICS
Sbjct: 61  RKNYSPAGRALPERPKRKHKSDNSFIVKKIRSTRAKLCRFLFNICS 106

[Close]

BLAST of Csa6G361210 vs. NCBI nr
Match: gi|700192355|gb|KGN47559.1| (hypothetical protein Csa_6G361210 [Cucumis sativus])

HSP 1 Score: 223.0 bits (567), Expect = 2.5e-55
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 1


Query: 1   MAKENIINEEVHELESDDSNNSHTSNDEVYPRKRQNCSHDFVEFGFKRCMSIKGFKTYNS 60
           MAKENIINEEVHELESDDSNNSHTSNDEVYPRKRQNCSHDFVEFGFKRCMSIKGFKTYNS
Sbjct: 1   MAKENIINEEVHELESDDSNNSHTSNDEVYPRKRQNCSHDFVEFGFKRCMSIKGFKTYNS 60

Query: 61  RKNYSPAGRALPERPKRKHKSDNSFIVKKIRSTRAKLCRFLFNICS 107
           RKNYSPAGRALPERPKRKHKSDNSFIVKKIRSTRAKLCRFLFNICS
Sbjct: 61  RKNYSPAGRALPERPKRKHKSDNSFIVKKIRSTRAKLCRFLFNICS 106

The following BLAST results are available for this feature:

BLAST of Csa6G361210 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KFH5_CUCSA	1.7e-55	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G361210 PE=4 SV=1	[more]

BLAST of Csa6G361210 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700192355\|gb\|KGN47559.1\|	2.5e-55	100.00	hypothetical protein Csa_6G361210 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa6G361210.1	Csa6G361210.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa6G361210	MELO3C030284.2	Melon (DHL92) v3.6.1	cumedB447
Csa6G361210	CsGy6G018270	Cucumber (Gy14) v2	cgybcuB281

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa6G361210	Cucurbita maxima (Rimu)	cmacuB195
Csa6G361210	Cucurbita maxima (Rimu)	cmacuB806
Csa6G361210	Cucurbita moschata (Rifu)	cmocuB179
Csa6G361210	Cucurbita moschata (Rifu)	cmocuB797
Csa6G361210	Melon (DHL92) v3.5.1	cumeB466
Csa6G361210	Watermelon (Charleston Gray)	cuwcgB496
Csa6G361210	Watermelon (97103) v1	cuwmB456
Csa6G361210	Cucurbita pepo (Zucchini)	cpecuB120
Csa6G361210	Cucurbita pepo (Zucchini)	cpecuB841
Csa6G361210	Bottle gourd (USVL1VR-Ls)	culsiB470
Csa6G361210	Silver-seed gourd	carcuB0146
Csa6G361210	Silver-seed gourd	carcuB0236
Csa6G361210	Watermelon (97103) v2	cuwmbB487
Csa6G361210	Wax gourd	cuwgoB587