Csa6G324810 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa6G324810
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr6 : 15102161 .. 15102481 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACAGCAACATCAACAACTATTTTGTCAGTTGGAGCAACTGAATCACTTAATAGTAAACTCAACTCATTTTTCCTATCAAAGTCTACTAGCTTAAGAATCAATTCACACGAGACGCTTCATAGCTTATGTTGCCACAAGGCAGATTCATCCCTTCATTTTGACTTAGAGTCGTCTTTCTTAGGGAAACAGAGCAGAGCTGCCCTATTGCATCATCTTGCTCCAACAGCACAAAAAGTGAACTCGAATGCACACAAAAATCTTCAACATAACCTCAAGCCTCTTACAAAGTTGTTGTTCTTGGAGCTGCCGGAGGAATAG

mRNA sequence

ATGACAGCAACATCAACAACTATTTTGTCAGTTGGAGCAACTGAATCACTTAATAGTAAACTCAACTCATTTTTCCTATCAAAGTCTACTAGCTTAAGAATCAATTCACACGAGACGCTTCATAGCTTATGTTGCCACAAGGCAGATTCATCCCTTCATTTTGACTTAGAGTCGTCTTTCTTAGGGAAACAGAGCAGAGCTGCCCTATTGCATCATCTTGCTCCAACAGCACAAAAAGTGAACTCGAATGCACACAAAAATCTTCAACATAACCTCAAGCCTCTTACAAAGTTGTTGTTCTTGGAGCTGCCGGAGGAATAG

Coding sequence (CDS)

ATGACAGCAACATCAACAACTATTTTGTCAGTTGGAGCAACTGAATCACTTAATAGTAAACTCAACTCATTTTTCCTATCAAAGTCTACTAGCTTAAGAATCAATTCACACGAGACGCTTCATAGCTTATGTTGCCACAAGGCAGATTCATCCCTTCATTTTGACTTAGAGTCGTCTTTCTTAGGGAAACAGAGCAGAGCTGCCCTATTGCATCATCTTGCTCCAACAGCACAAAAAGTGAACTCGAATGCACACAAAAATCTTCAACATAACCTCAAGCCTCTTACAAAGTTGTTGTTCTTGGAGCTGCCGGAGGAATAG

Protein sequence

MTATSTTILSVGATESLNSKLNSFFLSKSTSLRINSHETLHSLCCHKADSSLHFDLESSFLGKQSRAALLHHLAPTAQKVNSNAHKNLQHNLKPLTKLLFLELPEE*
Homology
[Close]
BLAST of Csa6G324810 vs. TrEMBL
Match: A0A0A0KGB0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G324810 PE=4 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 6.8e-52
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 1 

Query: 1   MTATSTTILSVGATESLNSKLNSFFLSKSTSLRINSHETLHSLCCHKADSSLHFDLESSF 60
           MTATSTTILSVGATESLNSKLNSFFLSKSTSLRINSHETLHSLCCHKADSSLHFDLESSF
Sbjct: 1   MTATSTTILSVGATESLNSKLNSFFLSKSTSLRINSHETLHSLCCHKADSSLHFDLESSF 60

Query: 61  LGKQSRAALLHHLAPTAQKVNSNAHKNLQHNLKPLTKLLFLELPEE 107
           LGKQSRAALLHHLAPTAQKVNSNAHKNLQHNLKPLTKLLFLELPEE
Sbjct: 61  LGKQSRAALLHHLAPTAQKVNSNAHKNLQHNLKPLTKLLFLELPEE 106

[Close]
BLAST of Csa6G324810 vs. TrEMBL
Match: A0A0A0KAR9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G394650 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 2.3e-28
Identity = 71/89 (79.78%), Postives = 76/89 (85.39%), Query Frame = 1 

Query: 1   MTATSTTILSVGATESLNSKLNSFFLSKSTSLRINSHETLHSLCCHKADSSLHFDLESSF 60
           M ATS TILS+GATESLNSKLNSF LSKS SLRI+SHETL S C  K+DSSL  DLESSF
Sbjct: 88  MAATSATILSIGATESLNSKLNSFSLSKSASLRISSHETLQSFCGLKSDSSLRCDLESSF 147

Query: 61  LGKQSRAALLHHLAPTAQKVNSNAHKNLQ 90
           LGKQSRAAL  HLAP+AQ+VNSNA KNLQ
Sbjct: 148 LGKQSRAALWRHLAPSAQRVNSNACKNLQ 176

[Close]
BLAST of Csa6G324810 vs. TrEMBL
Match: A0A0A0LSB1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G009760 PE=3 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 1.1e-17
Identity = 58/89 (65.17%), Postives = 64/89 (71.91%), Query Frame = 1 

Query: 1  MTATSTTILSVGATESLNSKLNSFFLSKSTSLRINSHETLHSLCCHKADSSLHFDLESSF 60
          M ATS T LS+GAT SLN+KLN F  SKS S RINS + L S C  KADSSL  D ESSF
Sbjct: 1  MAATSVTSLSIGATASLNTKLNLFSQSKSASPRINSLK-LQSFCGLKADSSLRCDSESSF 60

Query: 61 LGKQSRAALLHHLAPTAQKVNSNAHKNLQ 90
          LGKQS AAL  HLAP+AQ+ N N  K+LQ
Sbjct: 61 LGKQSSAALWRHLAPSAQRENLNLCKSLQ 88

[Close]
BLAST of Csa6G324810 vs. TrEMBL
Match: A0A068UUU5_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00035762001 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 6.0e-08
Identity = 36/89 (40.45%), Postives = 52/89 (58.43%), Query Frame = 1 

Query: 1  MTATSTTILSVGATESLNSKLNSFFLSKSTSLRINSHETLHSLCCHKADSSLHFDLESSF 60
          M ATS   LS+G+T  + +K NS + SK++ L  NS   L S    KA SS+  D +SSF
Sbjct: 1  MAATSAATLSIGSTACVGAKANSAYNSKTSGLSFNSRNCLRSFTGLKAASSVSCDSDSSF 60

Query: 61 LGKQSRAALLHHLAPTAQKVNSNAHKNLQ 90
          +GK+S AA+ H     AQK +  ++  +Q
Sbjct: 61 VGKESCAAIQHSFVSRAQKPSQRSYNYVQ 89

[Close]
BLAST of Csa6G324810 vs. TrEMBL
Match: M1BPZ5_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400019511 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.7e-07
Identity = 37/81 (45.68%), Postives = 49/81 (60.49%), Query Frame = 1 

Query: 1  MTATSTTILSVGATESLNSKLNSFFLSKSTSLRINSHETLHSLCCHKADSSLHFDLESSF 60
          M ATS T LSVG+T SL  K +S   SK+  ++ NS   + S    KA +++  + ESSF
Sbjct: 1  MAATSATTLSVGSTTSLGCKGSSISQSKAFGVKFNSKNNIRSFSGLKAATTVSCESESSF 60

Query: 61 LGKQSRAALLHHLAPTAQKVN 82
          LGK+S AAL   + P AQK N
Sbjct: 61 LGKESLAALKQSITPKAQKEN 81

[Close]
BLAST of Csa6G324810 vs. NCBI nr
Match: gi|700192233|gb|KGN47437.1| (hypothetical protein Csa_6G324810 [Cucumis sativus])

HSP 1 Score: 211.1 bits (536), Expect = 9.7e-52
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 1 

Query: 1   MTATSTTILSVGATESLNSKLNSFFLSKSTSLRINSHETLHSLCCHKADSSLHFDLESSF 60
           MTATSTTILSVGATESLNSKLNSFFLSKSTSLRINSHETLHSLCCHKADSSLHFDLESSF
Sbjct: 1   MTATSTTILSVGATESLNSKLNSFFLSKSTSLRINSHETLHSLCCHKADSSLHFDLESSF 60

Query: 61  LGKQSRAALLHHLAPTAQKVNSNAHKNLQHNLKPLTKLLFLELPEE 107
           LGKQSRAALLHHLAPTAQKVNSNAHKNLQHNLKPLTKLLFLELPEE
Sbjct: 61  LGKQSRAALLHHLAPTAQKVNSNAHKNLQHNLKPLTKLLFLELPEE 106

[Close]
BLAST of Csa6G324810 vs. NCBI nr
Match: gi|778727919|ref|XP_004136050.2| (PREDICTED: malate dehydrogenase, chloroplastic-like [Cucumis sativus])

HSP 1 Score: 132.9 bits (333), Expect = 3.4e-28
Identity = 71/89 (79.78%), Postives = 76/89 (85.39%), Query Frame = 1 

Query: 1  MTATSTTILSVGATESLNSKLNSFFLSKSTSLRINSHETLHSLCCHKADSSLHFDLESSF 60
          M ATS TILS+GATESLNSKLNSF LSKS SLRI+SHETL S C  K+DSSL  DLESSF
Sbjct: 1  MAATSATILSIGATESLNSKLNSFSLSKSASLRISSHETLQSFCGLKSDSSLRCDLESSF 60

Query: 61 LGKQSRAALLHHLAPTAQKVNSNAHKNLQ 90
          LGKQSRAAL  HLAP+AQ+VNSNA KNLQ
Sbjct: 61 LGKQSRAALWRHLAPSAQRVNSNACKNLQ 89

[Close]
BLAST of Csa6G324810 vs. NCBI nr
Match: gi|700189663|gb|KGN44896.1| (hypothetical protein Csa_7G394650 [Cucumis sativus])

HSP 1 Score: 132.9 bits (333), Expect = 3.4e-28
Identity = 71/89 (79.78%), Postives = 76/89 (85.39%), Query Frame = 1 

Query: 1   MTATSTTILSVGATESLNSKLNSFFLSKSTSLRINSHETLHSLCCHKADSSLHFDLESSF 60
           M ATS TILS+GATESLNSKLNSF LSKS SLRI+SHETL S C  K+DSSL  DLESSF
Sbjct: 88  MAATSATILSIGATESLNSKLNSFSLSKSASLRISSHETLQSFCGLKSDSSLRCDLESSF 147

Query: 61  LGKQSRAALLHHLAPTAQKVNSNAHKNLQ 90
           LGKQSRAAL  HLAP+AQ+VNSNA KNLQ
Sbjct: 148 LGKQSRAALWRHLAPSAQRVNSNACKNLQ 176

[Close]
BLAST of Csa6G324810 vs. NCBI nr
Match: gi|659101473|ref|XP_008451622.1| (PREDICTED: malate dehydrogenase, chloroplastic-like [Cucumis melo])

HSP 1 Score: 122.1 bits (305), Expect = 5.9e-25
Identity = 66/89 (74.16%), Postives = 70/89 (78.65%), Query Frame = 1 

Query: 1  MTATSTTILSVGATESLNSKLNSFFLSKSTSLRINSHETLHSLCCHKADSSLHFDLESSF 60
          M ATS TILS+GATESLN KL+SF  SKS SLRINSHETL S C  KADSSL  D ESSF
Sbjct: 1  MAATSATILSIGATESLNCKLSSFSHSKSASLRINSHETLQSFCGLKADSSLRCDSESSF 60

Query: 61 LGKQSRAALLHHLAPTAQKVNSNAHKNLQ 90
          LGKQS AAL  HLAP+AQ+VN N  KNLQ
Sbjct: 61 LGKQSSAALWRHLAPSAQRVNLNVRKNLQ 89

[Close]
BLAST of Csa6G324810 vs. NCBI nr
Match: gi|778655959|ref|XP_011660098.1| (PREDICTED: malate dehydrogenase, chloroplastic [Cucumis sativus])

HSP 1 Score: 97.4 bits (241), Expect = 1.6e-17
Identity = 58/89 (65.17%), Postives = 64/89 (71.91%), Query Frame = 1 

Query: 1  MTATSTTILSVGATESLNSKLNSFFLSKSTSLRINSHETLHSLCCHKADSSLHFDLESSF 60
          M ATS T LS+GAT SLN+KLN F  SKS S RINS + L S C  KADSSL  D ESSF
Sbjct: 1  MAATSVTSLSIGATASLNTKLNLFSQSKSASPRINSLK-LQSFCGLKADSSLRCDSESSF 60

Query: 61 LGKQSRAALLHHLAPTAQKVNSNAHKNLQ 90
          LGKQS AAL  HLAP+AQ+ N N  K+LQ
Sbjct: 61 LGKQSSAALWRHLAPSAQRENLNLCKSLQ 88

The following BLAST results are available for this feature:
BLAST of Csa6G324810 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KGB0_CUCSA6.8e-52100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G324810 PE=4 SV=1[more]
A0A0A0KAR9_CUCSA2.3e-2879.78Uncharacterized protein OS=Cucumis sativus GN=Csa_7G394650 PE=4 SV=1[more]
A0A0A0LSB1_CUCSA1.1e-1765.17Uncharacterized protein OS=Cucumis sativus GN=Csa_1G009760 PE=3 SV=1[more]
A0A068UUU5_COFCA6.0e-0840.45Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00035762001 PE=4 SV=1[more]
M1BPZ5_SOLTU1.7e-0745.68Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400019511 PE=4 SV=1[more]
BLAST of Csa6G324810 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700192233|gb|KGN47437.1|9.7e-52100.00hypothetical protein Csa_6G324810 [Cucumis sativus][more]
gi|778727919|ref|XP_004136050.2|3.4e-2879.78PREDICTED: malate dehydrogenase, chloroplastic-like [Cucumis sativus][more]
gi|700189663|gb|KGN44896.1|3.4e-2879.78hypothetical protein Csa_7G394650 [Cucumis sativus][more]
gi|659101473|ref|XP_008451622.1|5.9e-2574.16PREDICTED: malate dehydrogenase, chloroplastic-like [Cucumis melo][more]
gi|778655959|ref|XP_011660098.1|1.6e-1765.17PREDICTED: malate dehydrogenase, chloroplastic [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0005975 carbohydrate metabolic process
biological_process GO:0046487 glyoxylate metabolic process
biological_process GO:0006108 malate metabolic process
biological_process GO:0006090 pyruvate metabolic process
biological_process GO:0019643 reductive tricarboxylic acid cycle
cellular_component GO:0005575 cellular_component
molecular_function GO:0030060 L-malate dehydrogenase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa6G324810.1Csa6G324810.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa6G324810CSPI06G17610Wild cucumber (PI 183967)cpicuB313
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa6G324810Cucumber (Gy14) v1cgycuB352
Csa6G324810Melon (DHL92) v3.5.1cumeB445
Csa6G324810Watermelon (Charleston Gray)cuwcgB428
Csa6G324810Watermelon (Charleston Gray)cuwcgB477
Csa6G324810Watermelon (97103) v1cuwmB538
Csa6G324810Cucumber (Gy14) v2cgybcuB281
Csa6G324810Melon (DHL92) v3.6.1cumedB426