CSPI06G17610 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI06G17610
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Unknown protein
Location	Chr6 : 16023682 .. 16024002 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAGCAACATCAACAACTATTTTGTCAGTTGGAGCAACTGAATCACTTAATAGTAAACTCAACTCATTTTTCCTATCAAAGTCTACTAGCTTAAGAATCAATTCACACGAGACGCTTCATAGCTTATGTTGCCACAAGGCAGATTCATCCCTTCATTTTGACTTAGAGTCGTCTTTCTTAGGGAAACAGAGCAGAGCTGCCCTATTGCATCATCTTGCTCCAACAGCACAAAAAGTGAACTCGAATGCACACAAAAATCTTCAACATAACCTCAAGCCTCTTACAAAGTTGTTGTTCTTGGAGCTGCCGGAGGAATAG

mRNA sequence

ATGACAGCAACATCAACAACTATTTTGTCAGTTGGAGCAACTGAATCACTTAATAGTAAACTCAACTCATTTTTCCTATCAAAGTCTACTAGCTTAAGAATCAATTCACACGAGACGCTTCATAGCTTATGTTGCCACAAGGCAGATTCATCCCTTCATTTTGACTTAGAGTCGTCTTTCTTAGGGAAACAGAGCAGAGCTGCCCTATTGCATCATCTTGCTCCAACAGCACAAAAAGTGAACTCGAATGCACACAAAAATCTTCAACATAACCTCAAGCCTCTTACAAAGTTGTTGTTCTTGGAGCTGCCGGAGGAATAG

Coding sequence (CDS)

ATGACAGCAACATCAACAACTATTTTGTCAGTTGGAGCAACTGAATCACTTAATAGTAAACTCAACTCATTTTTCCTATCAAAGTCTACTAGCTTAAGAATCAATTCACACGAGACGCTTCATAGCTTATGTTGCCACAAGGCAGATTCATCCCTTCATTTTGACTTAGAGTCGTCTTTCTTAGGGAAACAGAGCAGAGCTGCCCTATTGCATCATCTTGCTCCAACAGCACAAAAAGTGAACTCGAATGCACACAAAAATCTTCAACATAACCTCAAGCCTCTTACAAAGTTGTTGTTCTTGGAGCTGCCGGAGGAATAG

Homology

[Close]

BLAST of CSPI06G17610 vs. TrEMBL
Match: A0A0A0KGB0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G324810 PE=4 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 3.1e-49
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 1


Query: 1   MTATSTTILSVGATESLNSKLNSFFLSKSTSLRINSHETLHSLCCHKADSSLHFDLESSF 60
           MTATSTTILSVGATESLNSKLNSFFLSKSTSLRINSHETLHSLCCHKADSSLHFDLESSF
Sbjct: 1   MTATSTTILSVGATESLNSKLNSFFLSKSTSLRINSHETLHSLCCHKADSSLHFDLESSF 60

Query: 61  LGKQSRAALLHHLAPTAQKVNSNAHKNLQHNLKPLTKLLFLELPEE 107
           LGKQSRAALLHHLAPTAQKVNSNAHKNLQHNLKPLTKLLFLELPEE
Sbjct: 61  LGKQSRAALLHHLAPTAQKVNSNAHKNLQHNLKPLTKLLFLELPEE 106

[Close]

BLAST of CSPI06G17610 vs. TrEMBL
Match: A0A0A0KAR9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G394650 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 8.3e-26
Identity = 71/89 (79.78%), Postives = 76/89 (85.39%), Query Frame = 1


Query: 1   MTATSTTILSVGATESLNSKLNSFFLSKSTSLRINSHETLHSLCCHKADSSLHFDLESSF 60
           M ATS TILS+GATESLNSKLNSF LSKS SLRI+SHETL S C  K+DSSL  DLESSF
Sbjct: 88  MAATSATILSIGATESLNSKLNSFSLSKSASLRISSHETLQSFCGLKSDSSLRCDLESSF 147

Query: 61  LGKQSRAALLHHLAPTAQKVNSNAHKNLQ 90
           LGKQSRAAL  HLAP+AQ+VNSNA KNLQ
Sbjct: 148 LGKQSRAALWRHLAPSAQRVNSNACKNLQ 176

[Close]

BLAST of CSPI06G17610 vs. TrEMBL
Match: A0A0A0LSB1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G009760 PE=3 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 3.9e-15
Identity = 58/89 (65.17%), Postives = 64/89 (71.91%), Query Frame = 1


Query: 1  MTATSTTILSVGATESLNSKLNSFFLSKSTSLRINSHETLHSLCCHKADSSLHFDLESSF 60
          M ATS T LS+GAT SLN+KLN F  SKS S RINS + L S C  KADSSL  D ESSF
Sbjct: 1  MAATSVTSLSIGATASLNTKLNLFSQSKSASPRINSLK-LQSFCGLKADSSLRCDSESSF 60

Query: 61 LGKQSRAALLHHLAPTAQKVNSNAHKNLQ 90
          LGKQS AAL  HLAP+AQ+ N N  K+LQ
Sbjct: 61 LGKQSSAALWRHLAPSAQRENLNLCKSLQ 88

[Close]

BLAST of CSPI06G17610 vs. NCBI nr
Match: gi|700192233|gb|KGN47437.1| (hypothetical protein Csa_6G324810 [Cucumis sativus])

HSP 1 Score: 202.2 bits (513), Expect = 4.5e-49
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 1


Query: 1   MTATSTTILSVGATESLNSKLNSFFLSKSTSLRINSHETLHSLCCHKADSSLHFDLESSF 60
           MTATSTTILSVGATESLNSKLNSFFLSKSTSLRINSHETLHSLCCHKADSSLHFDLESSF
Sbjct: 1   MTATSTTILSVGATESLNSKLNSFFLSKSTSLRINSHETLHSLCCHKADSSLHFDLESSF 60

Query: 61  LGKQSRAALLHHLAPTAQKVNSNAHKNLQHNLKPLTKLLFLELPEE 107
           LGKQSRAALLHHLAPTAQKVNSNAHKNLQHNLKPLTKLLFLELPEE
Sbjct: 61  LGKQSRAALLHHLAPTAQKVNSNAHKNLQHNLKPLTKLLFLELPEE 106

[Close]

BLAST of CSPI06G17610 vs. NCBI nr
Match: gi|778727919|ref|XP_004136050.2| (PREDICTED: malate dehydrogenase, chloroplastic-like [Cucumis sativus])

HSP 1 Score: 124.4 bits (311), Expect = 1.2e-25
Identity = 71/89 (79.78%), Postives = 76/89 (85.39%), Query Frame = 1


Query: 1  MTATSTTILSVGATESLNSKLNSFFLSKSTSLRINSHETLHSLCCHKADSSLHFDLESSF 60
          M ATS TILS+GATESLNSKLNSF LSKS SLRI+SHETL S C  K+DSSL  DLESSF
Sbjct: 1  MAATSATILSIGATESLNSKLNSFSLSKSASLRISSHETLQSFCGLKSDSSLRCDLESSF 60

Query: 61 LGKQSRAALLHHLAPTAQKVNSNAHKNLQ 90
          LGKQSRAAL  HLAP+AQ+VNSNA KNLQ
Sbjct: 61 LGKQSRAALWRHLAPSAQRVNSNACKNLQ 89

[Close]

BLAST of CSPI06G17610 vs. NCBI nr
Match: gi|700189663|gb|KGN44896.1| (hypothetical protein Csa_7G394650 [Cucumis sativus])

HSP 1 Score: 124.4 bits (311), Expect = 1.2e-25
Identity = 71/89 (79.78%), Postives = 76/89 (85.39%), Query Frame = 1


Query: 1   MTATSTTILSVGATESLNSKLNSFFLSKSTSLRINSHETLHSLCCHKADSSLHFDLESSF 60
           M ATS TILS+GATESLNSKLNSF LSKS SLRI+SHETL S C  K+DSSL  DLESSF
Sbjct: 88  MAATSATILSIGATESLNSKLNSFSLSKSASLRISSHETLQSFCGLKSDSSLRCDLESSF 147

Query: 61  LGKQSRAALLHHLAPTAQKVNSNAHKNLQ 90
           LGKQSRAAL  HLAP+AQ+VNSNA KNLQ
Sbjct: 148 LGKQSRAALWRHLAPSAQRVNSNACKNLQ 176

[Close]

BLAST of CSPI06G17610 vs. NCBI nr
Match: gi|659101473|ref|XP_008451622.1| (PREDICTED: malate dehydrogenase, chloroplastic-like [Cucumis melo])

HSP 1 Score: 113.6 bits (283), Expect = 2.1e-22
Identity = 66/89 (74.16%), Postives = 70/89 (78.65%), Query Frame = 1


Query: 1  MTATSTTILSVGATESLNSKLNSFFLSKSTSLRINSHETLHSLCCHKADSSLHFDLESSF 60
          M ATS TILS+GATESLN KL+SF  SKS SLRINSHETL S C  KADSSL  D ESSF
Sbjct: 1  MAATSATILSIGATESLNCKLSSFSHSKSASLRINSHETLQSFCGLKADSSLRCDSESSF 60

Query: 61 LGKQSRAALLHHLAPTAQKVNSNAHKNLQ 90
          LGKQS AAL  HLAP+AQ+VN N  KNLQ
Sbjct: 61 LGKQSSAALWRHLAPSAQRVNLNVRKNLQ 89

[Close]

BLAST of CSPI06G17610 vs. NCBI nr
Match: gi|778655959|ref|XP_011660098.1| (PREDICTED: malate dehydrogenase, chloroplastic [Cucumis sativus])

HSP 1 Score: 89.0 bits (219), Expect = 5.6e-15
Identity = 58/89 (65.17%), Postives = 64/89 (71.91%), Query Frame = 1


Query: 1  MTATSTTILSVGATESLNSKLNSFFLSKSTSLRINSHETLHSLCCHKADSSLHFDLESSF 60
          M ATS T LS+GAT SLN+KLN F  SKS S RINS + L S C  KADSSL  D ESSF
Sbjct: 1  MAATSVTSLSIGATASLNTKLNLFSQSKSASPRINSLK-LQSFCGLKADSSLRCDSESSF 60

Query: 61 LGKQSRAALLHHLAPTAQKVNSNAHKNLQ 90
          LGKQS AAL  HLAP+AQ+ N N  K+LQ
Sbjct: 61 LGKQSSAALWRHLAPSAQRENLNLCKSLQ 88

The following BLAST results are available for this feature:

BLAST of CSPI06G17610 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI06G17610 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KGB0_CUCSA	3.1e-49	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G324810 PE=4 SV=1	[more]
A0A0A0KAR9_CUCSA	8.3e-26	79.78	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G394650 PE=4 SV=1	[more]
A0A0A0LSB1_CUCSA	3.9e-15	65.17	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G009760 PE=3 SV=1	[more]

BLAST of CSPI06G17610 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI06G17610 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700192233\|gb\|KGN47437.1\|	4.5e-49	100.00	hypothetical protein Csa_6G324810 [Cucumis sativus]	[more]
gi\|778727919\|ref\|XP_004136050.2\|	1.2e-25	79.78	PREDICTED: malate dehydrogenase, chloroplastic-like [Cucumis sativus]	[more]
gi\|700189663\|gb\|KGN44896.1\|	1.2e-25	79.78	hypothetical protein Csa_7G394650 [Cucumis sativus]	[more]
gi\|659101473\|ref\|XP_008451622.1\|	2.1e-22	74.16	PREDICTED: malate dehydrogenase, chloroplastic-like [Cucumis melo]	[more]
gi\|778655959\|ref\|XP_011660098.1\|	5.6e-15	65.17	PREDICTED: malate dehydrogenase, chloroplastic [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0005975	carbohydrate metabolic process
biological_process	GO:0046487	glyoxylate metabolic process
biological_process	GO:0006108	malate metabolic process
biological_process	GO:0006090	pyruvate metabolic process
biological_process	GO:0019643	reductive tricarboxylic acid cycle
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0030060	L-malate dehydrogenase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI06G17610.1	CSPI06G17610.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI06G17610	Csa6G324810	Cucumber (Chinese Long) v2	cpicuB313

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI06G17610	Cucumber (Gy14) v1	cgycpiB368
CSPI06G17610	Cucurbita moschata (Rifu)	cmocpiB373
CSPI06G17610	Melon (DHL92) v3.5.1	cpimeB435
CSPI06G17610	Watermelon (Charleston Gray)	cpiwcgB504
CSPI06G17610	Watermelon (97103) v1	cpiwmB557
CSPI06G17610	Melon (DHL92) v3.6.1	cpimedB434
CSPI06G17610	Cucumber (Gy14) v2	cgybcpiB287
CSPI06G17610	Cucumber (Chinese Long) v3	cpicucB321
CSPI06G17610	Cucumber (Chinese Long) v3	cpicucB363