Csa6G303790 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa6G303790
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Thioredoxin-related
Location	Chr6 : 14587777 .. 14588106 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCATTTCTTTCCTCCACCGCTTCTCTCTCGATCCCCAGCACTGCCGCTCCGCCGCTAAGTGGACAGCGCTATTAACGCTAACCGCCGCCGTGACCTCCTTCGCTCCGGAGTTCATTTTCACAAATGCAACGTCGCTCCATTCGTCCTTCTCCAGATCGTGTGGCCGCGATGGCTACATCAGGATCCCACTCGACCTTCCCGGCGATGTTCTGTGCTTGCCGGCGAACATGGTGAATTGGTCCAGTTTTGATTTCTTTGTACCTACGGTTTTTGCGGCTCTCGGAGTCGGCGTTTCGGCTTGTTTCGTTAGATCCTTGGGATTGTGA

mRNA sequence

ATGGCCATTTCTTTCCTCCACCGCTTCTCTCTCGATCCCCAGCACTGCCGCTCCGCCGCTAAGTGGACAGCGCTATTAACGCTAACCGCCGCCGTGACCTCCTTCGCTCCGGAGTTCATTTTCACAAATGCAACGTCGCTCCATTCGTCCTTCTCCAGATCGTGTGGCCGCGATGGCTACATCAGGATCCCACTCGACCTTCCCGGCGATGTTCTGTGCTTGCCGGCGAACATGGTGAATTGGTCCAGTTTTGATTTCTTTGTACCTACGGTTTTTGCGGCTCTCGGAGTCGGCGTTTCGGCTTGTTTCGTTAGATCCTTGGGATTGTGA

Coding sequence (CDS)

ATGGCCATTTCTTTCCTCCACCGCTTCTCTCTCGATCCCCAGCACTGCCGCTCCGCCGCTAAGTGGACAGCGCTATTAACGCTAACCGCCGCCGTGACCTCCTTCGCTCCGGAGTTCATTTTCACAAATGCAACGTCGCTCCATTCGTCCTTCTCCAGATCGTGTGGCCGCGATGGCTACATCAGGATCCCACTCGACCTTCCCGGCGATGTTCTGTGCTTGCCGGCGAACATGGTGAATTGGTCCAGTTTTGATTTCTTTGTACCTACGGTTTTTGCGGCTCTCGGAGTCGGCGTTTCGGCTTGTTTCGTTAGATCCTTGGGATTGTGA

Protein sequence

MAISFLHRFSLDPQHCRSAAKWTALLTLTAAVTSFAPEFIFTNATSLHSSFSRSCGRDGYIRIPLDLPGDVLCLPANMVNWSSFDFFVPTVFAALGVGVSACFVRSLGL*

Homology

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BLAST of Csa6G303790 vs. TrEMBL
Match: A0A0A0KEV4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G303790 PE=4 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 6.1e-56
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 1


Query: 1   MAISFLHRFSLDPQHCRSAAKWTALLTLTAAVTSFAPEFIFTNATSLHSSFSRSCGRDGY 60
           MAISFLHRFSLDPQHCRSAAKWTALLTLTAAVTSFAPEFIFTNATSLHSSFSRSCGRDGY
Sbjct: 1   MAISFLHRFSLDPQHCRSAAKWTALLTLTAAVTSFAPEFIFTNATSLHSSFSRSCGRDGY 60

Query: 61  IRIPLDLPGDVLCLPANMVNWSSFDFFVPTVFAALGVGVSACFVRSLGL 110
           IRIPLDLPGDVLCLPANMVNWSSFDFFVPTVFAALGVGVSACFVRSLGL
Sbjct: 61  IRIPLDLPGDVLCLPANMVNWSSFDFFVPTVFAALGVGVSACFVRSLGL 109

[Close]

BLAST of Csa6G303790 vs. TrEMBL
Match: A0A0D2PX77_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G108400 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 3.4e-22
Identity = 57/97 (58.76%), Postives = 67/97 (69.07%), Query Frame = 1


Query: 13  PQHCRSAAKWTALLTLTAAVTSFAPEFIFTNATSLHSSFSRSCGRDGYIRIPLDLPGDVL 72
           PQ  R A  WT +LTL  ++ SF PE  F +A S  SSFSRSC  +G++RIPLD P + L
Sbjct: 5   PQLLR-ALTWTVVLTLMVSIASFVPEMAFVSAVSPSSSFSRSCNSEGFVRIPLDFPREKL 64

Query: 73  CLPANMVNWSSFDFFVPTVFAALGVGVSACFVRSLGL 110
           CLPA+ V  S  DFFVPT+FAAL V  SAC VRSLGL
Sbjct: 65  CLPAHTVKRSKIDFFVPTIFAALVVAASACVVRSLGL 100

[Close]

BLAST of Csa6G303790 vs. TrEMBL
Match: A0A067FZY6_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g038613mg PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 4.4e-22
Identity = 59/91 (64.84%), Postives = 66/91 (72.53%), Query Frame = 1


Query: 19  AAKWTALLTLTAAVTSFAPEFIFTNATSLHSSFSRSCGRDGYIRIPLDLPGDVLCLPANM 78
           AA WT LLTLT A+ SFAPEF F +A S  SSFS+SC  DG +RIPLD P + +CLP+ M
Sbjct: 24  AATWTILLTLTVALASFAPEFAFVSAISPSSSFSKSCHADGSVRIPLDFPRESVCLPSYM 83

Query: 79  VNWSSFDFFVPTVFAALGVGVSACFVRSLGL 110
           V  S  DFFVPTVFAAL V  SA  VRSLGL
Sbjct: 84  VRRSKMDFFVPTVFAALVVAGSAFAVRSLGL 114

[Close]

BLAST of Csa6G303790 vs. TrEMBL
Match: V4SGP4_9ROSI (Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v10030058mg PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 4.4e-22
Identity = 59/91 (64.84%), Postives = 66/91 (72.53%), Query Frame = 1


Query: 19  AAKWTALLTLTAAVTSFAPEFIFTNATSLHSSFSRSCGRDGYIRIPLDLPGDVLCLPANM 78
           AA WT LLTLT A+ SFAPEF F +A S  SSFS+SC  DG +RIPLD P + +CLP+ M
Sbjct: 10  AATWTILLTLTVALASFAPEFAFVSAISPSSSFSKSCHADGSVRIPLDFPRESVCLPSYM 69

Query: 79  VNWSSFDFFVPTVFAALGVGVSACFVRSLGL 110
           V  S  DFFVPTVFAAL V  SA  VRSLGL
Sbjct: 70  VRRSKMDFFVPTVFAALVVAGSAFAVRSLGL 100

[Close]

BLAST of Csa6G303790 vs. TrEMBL
Match: M5W1U5_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa019291mg PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 1.8e-20
Identity = 52/91 (57.14%), Postives = 67/91 (73.63%), Query Frame = 1


Query: 19  AAKWTALLTLTAAVTSFAPEFIFTNATSLHSSFSRSCGRDGYIRIPLDLPGDVLCLPANM 78
           AA WT LLTLT AV SF+PE  F ++ S  SSFSR+C  +G +R+P D+PGD+LCLPA++
Sbjct: 23  AATWTTLLTLTVAVASFSPEVAFVSSISSTSSFSRACDSEGSVRVPSDVPGDILCLPAHL 82

Query: 79  VNWSSFDFFVPTVFAALGVGVSACFVRSLGL 110
            + SS DF VP VFAA+ V  SA  VR++GL
Sbjct: 83  FSKSSIDFIVPPVFAAVVVAGSAFLVRAVGL 113

[Close]

BLAST of Csa6G303790 vs. TAIR10
Match: AT2G37530.1 (AT2G37530.1 unknown protein)

HSP 1 Score: 99.4 bits (246), Expect = 1.5e-21
Identity = 56/111 (50.45%), Postives = 64/111 (57.66%), Query Frame = 1


Query: 1   MAISFLHRFSLDPQHCRSAAKWTALLTLTAAVTSFAPEFIFTNATSLHSS--FSRSCGRD 60
           M  S  HRF+    H    A WT  LTLT A+ S APEF F +A    SS  FSR CG  
Sbjct: 5   MFSSLTHRFAWRIPHFVYGATWTLFLTLTVAIISLAPEFAFVSAIFPSSSEVFSRRCGSY 64

Query: 61  GYIRIPLDLPGDVLCLPANMVNWSSFDFFVPTVFAALGVGVSACFVRSLGL 110
             I +PLDLP +VLCLPAN+   S  D  VP VFAA+ V +SA  VR++GL
Sbjct: 65  AAILVPLDLPSEVLCLPANLFRRSKMDLVVPPVFAAIVVALSAVVVRTMGL 115

[Close]

BLAST of Csa6G303790 vs. TAIR10
Match: AT1G07795.1 (AT1G07795.1 unknown protein)

HSP 1 Score: 90.9 bits (224), Expect = 5.3e-19
Identity = 46/89 (51.69%), Postives = 57/89 (64.04%), Query Frame = 1


Query: 19  AAKWTALLTLTAAVTSFAPEFIFTNATSLHSSFSRSCGR-DGYIRIPLDLPGDVLCLPAN 78
           AA WT LL  T AV SFAPE  F       S+ S SCG  DG+++IP+D  G+ +C+P+N
Sbjct: 26  AATWTVLLMFTVAVASFAPEMAFV------STVSSSCGGGDGFVKIPMDFAGESICVPSN 85

Query: 79  MVNWSSFDFFVPTVFAALGVGVSACFVRS 107
           MV  S FD FVP++FAA+ V  SAC +RS
Sbjct: 86  MVKRSRFDLFVPSIFAAVMVTASACLIRS 108

[Close]

BLAST of Csa6G303790 vs. TAIR10
Match: AT2G28725.1 (AT2G28725.1 unknown protein)

HSP 1 Score: 74.3 bits (181), Expect = 5.1e-14
Identity = 39/87 (44.83%), Postives = 50/87 (57.47%), Query Frame = 1


Query: 20  AKWTALLTLTAAVTSFAPEFIFTNATSLHSSFSRSCGRDGYIRIPLDLPGDVLCLPANMV 79
           A WT LL +T A+ SFAPE  F +     S        DG++RIP+DLPG++L LP+ MV
Sbjct: 19  ATWTILLMITVALASFAPEMAFVSKLKSSS--------DGFVRIPMDLPGEMLILPSEMV 78

Query: 80  NWSSFDFFVPTVFAALGVGVSACFVRS 107
             S  D F+PT+FA + V  S   +RS
Sbjct: 79  KNSYLDVFLPTIFAGVMVIASVSLLRS 97

[Close]

BLAST of Csa6G303790 vs. NCBI nr
Match: gi|778714557|ref|XP_011657255.1| (PREDICTED: uncharacterized protein LOC105435838 [Cucumis sativus])

HSP 1 Score: 224.6 bits (571), Expect = 8.7e-56
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 1


Query: 1   MAISFLHRFSLDPQHCRSAAKWTALLTLTAAVTSFAPEFIFTNATSLHSSFSRSCGRDGY 60
           MAISFLHRFSLDPQHCRSAAKWTALLTLTAAVTSFAPEFIFTNATSLHSSFSRSCGRDGY
Sbjct: 1   MAISFLHRFSLDPQHCRSAAKWTALLTLTAAVTSFAPEFIFTNATSLHSSFSRSCGRDGY 60

Query: 61  IRIPLDLPGDVLCLPANMVNWSSFDFFVPTVFAALGVGVSACFVRSLGL 110
           IRIPLDLPGDVLCLPANMVNWSSFDFFVPTVFAALGVGVSACFVRSLGL
Sbjct: 61  IRIPLDLPGDVLCLPANMVNWSSFDFFVPTVFAALGVGVSACFVRSLGL 109

[Close]

BLAST of Csa6G303790 vs. NCBI nr
Match: gi|659095073|ref|XP_008448381.1| (PREDICTED: uncharacterized protein LOC103490587 [Cucumis melo])

HSP 1 Score: 204.5 bits (519), Expect = 9.4e-50
Identity = 101/109 (92.66%), Postives = 102/109 (93.58%), Query Frame = 1


Query: 1   MAISFLHRFSLDPQHCRSAAKWTALLTLTAAVTSFAPEFIFTNATSLHSSFSRSCGRDGY 60
           M ISFLHRFSLDP HCR+AAKWTALLTLTAAV SFAPEFIF NATSLHSSFSRSC RDGY
Sbjct: 1   MPISFLHRFSLDPPHCRTAAKWTALLTLTAAVASFAPEFIFANATSLHSSFSRSCRRDGY 60

Query: 61  IRIPLDLPGDVLCLPANMVNWSSFDFFVPTVFAALGVGVSACFVRSLGL 110
           IRIPLDLPGDVLCLPANMVN SS DFFVPTVFAALGVGVSACFVRSLGL
Sbjct: 61  IRIPLDLPGDVLCLPANMVNRSSLDFFVPTVFAALGVGVSACFVRSLGL 109

[Close]

BLAST of Csa6G303790 vs. NCBI nr
Match: gi|823123195|ref|XP_012474502.1| (PREDICTED: uncharacterized protein LOC105791127 [Gossypium raimondii])

HSP 1 Score: 112.5 bits (280), Expect = 4.8e-22
Identity = 57/97 (58.76%), Postives = 67/97 (69.07%), Query Frame = 1


Query: 13  PQHCRSAAKWTALLTLTAAVTSFAPEFIFTNATSLHSSFSRSCGRDGYIRIPLDLPGDVL 72
           PQ  R A  WT +LTL  ++ SF PE  F +A S  SSFSRSC  +G++RIPLD P + L
Sbjct: 5   PQLLR-ALTWTVVLTLMVSIASFVPEMAFVSAVSPSSSFSRSCNSEGFVRIPLDFPREKL 64

Query: 73  CLPANMVNWSSFDFFVPTVFAALGVGVSACFVRSLGL 110
           CLPA+ V  S  DFFVPT+FAAL V  SAC VRSLGL
Sbjct: 65  CLPAHTVKRSKIDFFVPTIFAALVVAASACVVRSLGL 100

[Close]

BLAST of Csa6G303790 vs. NCBI nr
Match: gi|567864252|ref|XP_006424775.1| (hypothetical protein CICLE_v10030058mg, partial [Citrus clementina])

HSP 1 Score: 112.1 bits (279), Expect = 6.3e-22
Identity = 59/91 (64.84%), Postives = 66/91 (72.53%), Query Frame = 1


Query: 19  AAKWTALLTLTAAVTSFAPEFIFTNATSLHSSFSRSCGRDGYIRIPLDLPGDVLCLPANM 78
           AA WT LLTLT A+ SFAPEF F +A S  SSFS+SC  DG +RIPLD P + +CLP+ M
Sbjct: 10  AATWTILLTLTVALASFAPEFAFVSAISPSSSFSKSCHADGSVRIPLDFPRESVCLPSYM 69

Query: 79  VNWSSFDFFVPTVFAALGVGVSACFVRSLGL 110
           V  S  DFFVPTVFAAL V  SA  VRSLGL
Sbjct: 70  VRRSKMDFFVPTVFAALVVAGSAFAVRSLGL 100

[Close]

BLAST of Csa6G303790 vs. NCBI nr
Match: gi|568870955|ref|XP_006488659.1| (PREDICTED: uncharacterized protein LOC102613217 [Citrus sinensis])

HSP 1 Score: 112.1 bits (279), Expect = 6.3e-22
Identity = 59/91 (64.84%), Postives = 66/91 (72.53%), Query Frame = 1


Query: 19  AAKWTALLTLTAAVTSFAPEFIFTNATSLHSSFSRSCGRDGYIRIPLDLPGDVLCLPANM 78
           AA WT LLTLT A+ SFAPEF F +A S  SSFS+SC  DG +RIPLD P + +CLP+ M
Sbjct: 24  AATWTILLTLTVALASFAPEFAFVSAISPSSSFSKSCHADGSVRIPLDFPRESVCLPSYM 83

Query: 79  VNWSSFDFFVPTVFAALGVGVSACFVRSLGL 110
           V  S  DFFVPTVFAAL V  SA  VRSLGL
Sbjct: 84  VRRSKMDFFVPTVFAALVVAGSAFAVRSLGL 114

The following BLAST results are available for this feature:

BLAST of Csa6G303790 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KEV4_CUCSA	6.1e-56	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G303790 PE=4 SV=1	[more]
A0A0D2PX77_GOSRA	3.4e-22	58.76	Uncharacterized protein OS=Gossypium raimondii GN=B456_001G108400 PE=4 SV=1	[more]
A0A067FZY6_CITSI	4.4e-22	64.84	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g038613mg PE=4 SV=1	[more]
V4SGP4_9ROSI	4.4e-22	64.84	Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v10030058mg PE=...	[more]
M5W1U5_PRUPE	1.8e-20	57.14	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa019291mg PE=4 SV=1	[more]

BLAST of Csa6G303790 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G37530.1	1.5e-21	50.45	unknown protein	[more]
AT1G07795.1	5.3e-19	51.69	unknown protein	[more]
AT2G28725.1	5.1e-14	44.83	unknown protein	[more]

BLAST of Csa6G303790 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778714557\|ref\|XP_011657255.1\|	8.7e-56	100.00	PREDICTED: uncharacterized protein LOC105435838 [Cucumis sativus]	[more]
gi\|659095073\|ref\|XP_008448381.1\|	9.4e-50	92.66	PREDICTED: uncharacterized protein LOC103490587 [Cucumis melo]	[more]
gi\|823123195\|ref\|XP_012474502.1\|	4.8e-22	58.76	PREDICTED: uncharacterized protein LOC105791127 [Gossypium raimondii]	[more]
gi\|567864252\|ref\|XP_006424775.1\|	6.3e-22	64.84	hypothetical protein CICLE_v10030058mg, partial [Citrus clementina]	[more]
gi\|568870955\|ref\|XP_006488659.1\|	6.3e-22	64.84	PREDICTED: uncharacterized protein LOC102613217 [Citrus sinensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa6G303790.1	Csa6G303790.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34658	FAMILY NOT NAMED	coord: 1..109 score: 1.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa6G303790	Cla018227	Watermelon (97103) v1	cuwmB509
Csa6G303790	Cla013287	Watermelon (97103) v1	cuwmB528
Csa6G303790	MELO3C013683	Melon (DHL92) v3.5.1	cumeB431
Csa6G303790	MELO3C003112	Melon (DHL92) v3.5.1	cumeB505
Csa6G303790	ClCG02G020370	Watermelon (Charleston Gray)	cuwcgB455
Csa6G303790	ClCG04G008370	Watermelon (Charleston Gray)	cuwcgB469
Csa6G303790	Lsi01G014080	Bottle gourd (USVL1VR-Ls)	culsiB433
Csa6G303790	Lsi10G013560	Bottle gourd (USVL1VR-Ls)	culsiB408
Csa6G303790	MELO3C003112.2	Melon (DHL92) v3.6.1	cumedB485
Csa6G303790	MELO3C013683.2	Melon (DHL92) v3.6.1	cumedB410
Csa6G303790	Cla97C02G046330	Watermelon (97103) v2	cuwmbB445
Csa6G303790	Cla97C04G075080	Watermelon (97103) v2	cuwmbB459
Csa6G303790	Bhi10G000546	Wax gourd	cuwgoB598
Csa6G303790	CSPI06G16820	Wild cucumber (PI 183967)	cpicuB313
Csa6G303790	CSPI04G14450	Wild cucumber (PI 183967)	cpicuB200
Csa6G303790	Cucsa.379950	Cucumber (Gy14) v1	cgycuB533
Csa6G303790	Cucsa.066020	Cucumber (Gy14) v1	cgycuB058
Csa6G303790	CmaCh20G004210	Cucurbita maxima (Rimu)	cmacuB564
Csa6G303790	CmoCh20G004590	Cucurbita moschata (Rifu)	cmocuB554

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Csa6G303790	Csa4G294400	Cucumber (Chinese Long) v2	cucuB145

The following block(s) are covering this gene:


Gene	Organism	Block
Csa6G303790	Cucurbita maxima (Rimu)	cmacuB230
Csa6G303790	Bottle gourd (USVL1VR-Ls)	culsiB440
Csa6G303790	Cucumber (Gy14) v2	cgybcuB281