Cla018227 (gene) Watermelon (97103) v1

Overview
NameCla018227
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionThioredoxin-related (AHRD V1 *-*- B6SR54_MAIZE)
LocationChr4 : 19981596 .. 19981946 (-)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCCGATTTCTATACCACCGTCTCAGATCGCGGTGGCCACTGCTCGTCTACTCCGCCTCCTGGACCATTCTCCTGACGCTCACCGTCGCCGCCGCCTCCTTCGCGCCGGAGCTCGCCTTCGCGTCGGCTATTTCGCCGTCCTCGTCTTTTGCGGCCGAGTGTAAGTCCGATGGTTTGGTTAGGGTTCCGATGGATATTTCGGGAGATGTTCTTTGCGTTCCGGATCGTTTGTTTAGGAAATCCGGAATTGATCTGATTGTTCCTCCTATTTTCGCCGCAGTTGTAGTGGCTGGTTCGGCTTGCTTTGTTAGGGCTTTGGGCCTTTGGGCCGACGACGATGCCCTCTGA

mRNA sequence

ATGATCCGATTTCTATACCACCGTCTCAGATCGCGGTGGCCACTGCTCGTCTACTCCGCCTCCTGGACCATTCTCCTGACGCTCACCGTCGCCGCCGCCTCCTTCGCGCCGGAGCTCGCCTTCGCGTCGGCTATTTCGCCGTCCTCGTCTTTTGCGGCCGAGTGTAAGTCCGATGGTTTGGTTAGGGTTCCGATGGATATTTCGGGAGATGTTCTTTGCGTTCCGGATCGTTTGTTTAGGAAATCCGGAATTGATCTGATTGTTCCTCCTATTTTCGCCGCAGTTGTAGTGGCTGGTTCGGCTTGCTTTGTTAGGGCTTTGGGCCTTTGGGCCGACGACGATGCCCTCTGA

Coding sequence (CDS)

ATGATCCGATTTCTATACCACCGTCTCAGATCGCGGTGGCCACTGCTCGTCTACTCCGCCTCCTGGACCATTCTCCTGACGCTCACCGTCGCCGCCGCCTCCTTCGCGCCGGAGCTCGCCTTCGCGTCGGCTATTTCGCCGTCCTCGTCTTTTGCGGCCGAGTGTAAGTCCGATGGTTTGGTTAGGGTTCCGATGGATATTTCGGGAGATGTTCTTTGCGTTCCGGATCGTTTGTTTAGGAAATCCGGAATTGATCTGATTGTTCCTCCTATTTTCGCCGCAGTTGTAGTGGCTGGTTCGGCTTGCTTTGTTAGGGCTTTGGGCCTTTGGGCCGACGACGATGCCCTCTGA

Protein sequence

MIRFLYHRLRSRWPLLVYSASWTILLTLTVAAASFAPELAFASAISPSSSFAAECKSDGLVRVPMDISGDVLCVPDRLFRKSGIDLIVPPIFAAVVVAGSACFVRALGLWADDDAL
Homology
[Close]
BLAST of Cla018227 vs. TrEMBL
Match: A0A0A0L0V5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G294400 PE=4 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 1.6e-54
Identity = 109/114 (95.61%), Postives = 112/114 (98.25%), Query Frame = 1 

Query: 1   MIRFLYHRLRSRWPLLVYSASWTILLTLTVAAASFAPELAFASAISPSSSFAAECKSDGL 60
           M+RFLY RLRSRWPLLV+SASWT+LLTLTVAAASFAPELAFASAISPSSSFAAECKSDGL
Sbjct: 1   MLRFLYRRLRSRWPLLVFSASWTLLLTLTVAAASFAPELAFASAISPSSSFAAECKSDGL 60

Query: 61  VRVPMDISGDVLCVPDRLFRKSGIDLIVPPIFAAVVVAGSACFVRALGLWADDD 115
           VRVPMDI GDVLCVPDRLFRKSGIDLIVPPIFAAVVVAGSACFVRALGLWADDD
Sbjct: 61  VRVPMDIPGDVLCVPDRLFRKSGIDLIVPPIFAAVVVAGSACFVRALGLWADDD 114

[Close]
BLAST of Cla018227 vs. TrEMBL
Match: F6HQU3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0040g03390 PE=4 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 9.0e-34
Identity = 70/105 (66.67%), Postives = 85/105 (80.95%), Query Frame = 1 

Query: 9   LRSRWPLLVYSASWTILLTLTVAAASFAPELAFASAISPSSSFAAECKSDGLVRVPMDIS 68
           L SRWPLL+Y+A+WT LL+ TVA ASF PE AF  AISPSSSF+  C ++G +RVPMD+ 
Sbjct: 13  LTSRWPLLLYAAAWTALLSATVAVASFLPEAAFVWAISPSSSFSRACDAEGFIRVPMDLP 72

Query: 69  GDVLCVPDRLFRKSGIDLIVPPIFAAVVVAGSACFVRALGLWADD 114
           G+VLC+P  LF K  +DL+VPP+FAAVVVAGSAC VRA+GLW DD
Sbjct: 73  GEVLCLPAHLFAKFSMDLLVPPVFAAVVVAGSACLVRAMGLWEDD 117

[Close]
BLAST of Cla018227 vs. TrEMBL
Match: A5BFD9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_029717 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 1.2e-33
Identity = 70/105 (66.67%), Postives = 85/105 (80.95%), Query Frame = 1 

Query: 9   LRSRWPLLVYSASWTILLTLTVAAASFAPELAFASAISPSSSFAAECKSDGLVRVPMDIS 68
           L SRWPLL+Y+A+WT LL+ TVA ASF PE AF  AISPSSSF+  C ++G +RVPMD+ 
Sbjct: 13  LTSRWPLLLYAAAWTALLSATVAVASFLPEAAFVWAISPSSSFSRACDAEGFIRVPMDLP 72

Query: 69  GDVLCVPDRLFRKSGIDLIVPPIFAAVVVAGSACFVRALGLWADD 114
           G+VLC+P  LF K  +DL+VPP+FAAVVVAGSAC VRA+GLW DD
Sbjct: 73  GEVLCLPAHLFAKFXMDLLVPPVFAAVVVAGSACLVRAMGLWEDD 117

[Close]
BLAST of Cla018227 vs. TrEMBL
Match: M5W1U5_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa019291mg PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 1.3e-32
Identity = 70/106 (66.04%), Postives = 85/106 (80.19%), Query Frame = 1 

Query: 9   LRSRWPLLVYSASWTILLTLTVAAASFAPELAFASAISPSSSFAAECKSDGLVRVPMDIS 68
           L  RWP+LVY+A+WT LLTLTVA ASF+PE+AF S+IS +SSF+  C S+G VRVP D+ 
Sbjct: 13  LSLRWPVLVYAATWTTLLTLTVAVASFSPEVAFVSSISSTSSFSRACDSEGSVRVPSDVP 72

Query: 69  GDVLCVPDRLFRKSGIDLIVPPIFAAVVVAGSACFVRALGLWADDD 115
           GD+LC+P  LF KS ID IVPP+FAAVVVAGSA  VRA+GLW  D+
Sbjct: 73  GDILCLPAHLFSKSSIDFIVPPVFAAVVVAGSAFLVRAVGLWETDE 118

[Close]
BLAST of Cla018227 vs. TrEMBL
Match: A0A067KKS3_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09041 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 1.7e-32
Identity = 70/110 (63.64%), Postives = 88/110 (80.00%), Query Frame = 1 

Query: 5   LYHRLRSRWPLLVYSASWTILLTLTVAAASFAPELAFASAISPSSSFAAECKSDGLVRVP 64
           L HR+  RWPLL+Y+A WT LLT TVA ASF+PE+AF SAIS SSSF+ EC+ +G VRVP
Sbjct: 9   LRHRVLIRWPLLLYAAKWTALLTATVAVASFSPEMAFVSAISMSSSFSRECEVEGTVRVP 68

Query: 65  MDISGDVLCVPDRLFRKSGIDLIVPPIFAAVVVAGSACFVRALGLWADDD 115
           +D+ G+++C+P  LF +S IDLIVPP+FAAVVVAGSA  +RA GLW D +
Sbjct: 69  VDMPGEIVCLPAHLFVRSKIDLIVPPVFAAVVVAGSAWAIRATGLWEDHE 118

[Close]
BLAST of Cla018227 vs. NCBI nr
Match: gi|449448912|ref|XP_004142209.1| (PREDICTED: uncharacterized protein LOC101207834 [Cucumis sativus])

HSP 1 Score: 219.9 bits (559), Expect = 2.3e-54
Identity = 109/114 (95.61%), Postives = 112/114 (98.25%), Query Frame = 1 

Query: 1   MIRFLYHRLRSRWPLLVYSASWTILLTLTVAAASFAPELAFASAISPSSSFAAECKSDGL 60
           M+RFLY RLRSRWPLLV+SASWT+LLTLTVAAASFAPELAFASAISPSSSFAAECKSDGL
Sbjct: 1   MLRFLYRRLRSRWPLLVFSASWTLLLTLTVAAASFAPELAFASAISPSSSFAAECKSDGL 60

Query: 61  VRVPMDISGDVLCVPDRLFRKSGIDLIVPPIFAAVVVAGSACFVRALGLWADDD 115
           VRVPMDI GDVLCVPDRLFRKSGIDLIVPPIFAAVVVAGSACFVRALGLWADDD
Sbjct: 61  VRVPMDIPGDVLCVPDRLFRKSGIDLIVPPIFAAVVVAGSACFVRALGLWADDD 114

[Close]
BLAST of Cla018227 vs. NCBI nr
Match: gi|225439727|ref|XP_002273819.1| (PREDICTED: uncharacterized protein LOC100241385 [Vitis vinifera])

HSP 1 Score: 151.0 bits (380), Expect = 1.3e-33
Identity = 70/105 (66.67%), Postives = 85/105 (80.95%), Query Frame = 1 

Query: 9   LRSRWPLLVYSASWTILLTLTVAAASFAPELAFASAISPSSSFAAECKSDGLVRVPMDIS 68
           L SRWPLL+Y+A+WT LL+ TVA ASF PE AF  AISPSSSF+  C ++G +RVPMD+ 
Sbjct: 13  LTSRWPLLLYAAAWTALLSATVAVASFLPEAAFVWAISPSSSFSRACDAEGFIRVPMDLP 72

Query: 69  GDVLCVPDRLFRKSGIDLIVPPIFAAVVVAGSACFVRALGLWADD 114
           G+VLC+P  LF K  +DL+VPP+FAAVVVAGSAC VRA+GLW DD
Sbjct: 73  GEVLCLPAHLFAKFSMDLLVPPVFAAVVVAGSACLVRAMGLWEDD 117

[Close]
BLAST of Cla018227 vs. NCBI nr
Match: gi|147782827|emb|CAN76818.1| (hypothetical protein VITISV_029717 [Vitis vinifera])

HSP 1 Score: 150.6 bits (379), Expect = 1.7e-33
Identity = 70/105 (66.67%), Postives = 85/105 (80.95%), Query Frame = 1 

Query: 9   LRSRWPLLVYSASWTILLTLTVAAASFAPELAFASAISPSSSFAAECKSDGLVRVPMDIS 68
           L SRWPLL+Y+A+WT LL+ TVA ASF PE AF  AISPSSSF+  C ++G +RVPMD+ 
Sbjct: 13  LTSRWPLLLYAAAWTALLSATVAVASFLPEAAFVWAISPSSSFSRACDAEGFIRVPMDLP 72

Query: 69  GDVLCVPDRLFRKSGIDLIVPPIFAAVVVAGSACFVRALGLWADD 114
           G+VLC+P  LF K  +DL+VPP+FAAVVVAGSAC VRA+GLW DD
Sbjct: 73  GEVLCLPAHLFAKFXMDLLVPPVFAAVVVAGSACLVRAMGLWEDD 117

[Close]
BLAST of Cla018227 vs. NCBI nr
Match: gi|645220684|ref|XP_008241329.1| (PREDICTED: uncharacterized protein LOC103339758 [Prunus mume])

HSP 1 Score: 148.3 bits (373), Expect = 8.4e-33
Identity = 69/104 (66.35%), Postives = 85/104 (81.73%), Query Frame = 1 

Query: 11  SRWPLLVYSASWTILLTLTVAAASFAPELAFASAISPSSSFAAECKSDGLVRVPMDISGD 70
           SRWP+L+Y+A+WT LLTLTVA ASF+PE+AF S+IS +SSF+  C S+G VRVP D+ GD
Sbjct: 15  SRWPVLIYAATWTTLLTLTVAVASFSPEVAFVSSISSTSSFSRACDSEGYVRVPSDVPGD 74

Query: 71  VLCVPDRLFRKSGIDLIVPPIFAAVVVAGSACFVRALGLWADDD 115
           +LC+P  LF KS ID IVPP+FAAVVVAGSA  VRA+GLW  D+
Sbjct: 75  ILCLPAHLFSKSSIDFIVPPVFAAVVVAGSAFLVRAVGLWETDE 118

[Close]
BLAST of Cla018227 vs. NCBI nr
Match: gi|595832647|ref|XP_007206513.1| (hypothetical protein PRUPE_ppa019291mg [Prunus persica])

HSP 1 Score: 147.1 bits (370), Expect = 1.9e-32
Identity = 70/106 (66.04%), Postives = 85/106 (80.19%), Query Frame = 1 

Query: 9   LRSRWPLLVYSASWTILLTLTVAAASFAPELAFASAISPSSSFAAECKSDGLVRVPMDIS 68
           L  RWP+LVY+A+WT LLTLTVA ASF+PE+AF S+IS +SSF+  C S+G VRVP D+ 
Sbjct: 13  LSLRWPVLVYAATWTTLLTLTVAVASFSPEVAFVSSISSTSSFSRACDSEGSVRVPSDVP 72

Query: 69  GDVLCVPDRLFRKSGIDLIVPPIFAAVVVAGSACFVRALGLWADDD 115
           GD+LC+P  LF KS ID IVPP+FAAVVVAGSA  VRA+GLW  D+
Sbjct: 73  GDILCLPAHLFSKSSIDFIVPPVFAAVVVAGSAFLVRAVGLWETDE 118

The following BLAST results are available for this feature:
BLAST of Cla018227 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L0V5_CUCSA1.6e-5495.61Uncharacterized protein OS=Cucumis sativus GN=Csa_4G294400 PE=4 SV=1[more]
F6HQU3_VITVI9.0e-3466.67Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0040g03390 PE=4 SV=... [more]
A5BFD9_VITVI1.2e-3366.67Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_029717 PE=4 SV=1[more]
M5W1U5_PRUPE1.3e-3266.04Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa019291mg PE=4 SV=1[more]
A0A067KKS3_JATCU1.7e-3263.64Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09041 PE=4 SV=1[more]
BLAST of Cla018227 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449448912|ref|XP_004142209.1|2.3e-5495.61PREDICTED: uncharacterized protein LOC101207834 [Cucumis sativus][more]
gi|225439727|ref|XP_002273819.1|1.3e-3366.67PREDICTED: uncharacterized protein LOC100241385 [Vitis vinifera][more]
gi|147782827|emb|CAN76818.1|1.7e-3366.67hypothetical protein VITISV_029717 [Vitis vinifera][more]
gi|645220684|ref|XP_008241329.1|8.4e-3366.35PREDICTED: uncharacterized protein LOC103339758 [Prunus mume][more]
gi|595832647|ref|XP_007206513.1|1.9e-3266.04hypothetical protein PRUPE_ppa019291mg [Prunus persica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0016020 membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla018227Cla018227.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34658FAMILY NOT NAMEDcoord: 1..116
score: 1.9

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla018227Cla97C04G075080Watermelon (97103) v2wmwmbB291
Cla018227Cla97C02G046330Watermelon (97103) v2wmwmbB288
Cla018227Csa6G303790Cucumber (Chinese Long) v2cuwmB509
Cla018227Csa4G294400Cucumber (Chinese Long) v2cuwmB338
Cla018227MELO3C003112Melon (DHL92) v3.5.1mewmB583
Cla018227MELO3C013683Melon (DHL92) v3.5.1mewmB106
Cla018227ClCG02G020370Watermelon (Charleston Gray)wcgwmB196
Cla018227ClCG04G008370Watermelon (Charleston Gray)wcgwmB255
Cla018227CSPI04G14450Wild cucumber (PI 183967)cpiwmB345
Cla018227CSPI06G16820Wild cucumber (PI 183967)cpiwmB528
Cla018227Cucsa.066020Cucumber (Gy14) v1cgywmB064
Cla018227Cucsa.379950Cucumber (Gy14) v1cgywmB685
Cla018227CmaCh07G009700Cucurbita maxima (Rimu)cmawmB835
Cla018227CmaCh20G004210Cucurbita maxima (Rimu)cmawmB522
Cla018227CmoCh07G010220Cucurbita moschata (Rifu)cmowmB825
Cla018227CmoCh20G004590Cucurbita moschata (Rifu)cmowmB512
Cla018227Lsi01G014080Bottle gourd (USVL1VR-Ls)lsiwmB152
Cla018227Lsi10G013560Bottle gourd (USVL1VR-Ls)lsiwmB063
Cla018227Cp4.1LG19g04410Cucurbita pepo (Zucchini)cpewmB485
Cla018227MELO3C013683.2Melon (DHL92) v3.6.1medwmB104
Cla018227MELO3C003112.2Melon (DHL92) v3.6.1medwmB571
Cla018227Carg24360Silver-seed gourdcarwmB0468
Cla018227CsaV3_6G022260Cucumber (Chinese Long) v3cucwmB534
Cla018227CsaV3_4G024780Cucumber (Chinese Long) v3cucwmB355
Cla018227Bhi10G000546Wax gourdwgowmB376
Cla018227Bhi03G001548Wax gourdwgowmB449
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cla018227Cla013287Watermelon (97103) v1wmwmB153
The following block(s) are covering this gene:
GeneOrganismBlock
Cla018227Watermelon (97103) v1wmwmB026
Cla018227Watermelon (97103) v1wmwmB050
Cla018227Watermelon (97103) v1wmwmB085
Cla018227Watermelon (97103) v1wmwmB106
Cla018227Cucumber (Gy14) v1cgywmB309
Cla018227Cucumber (Gy14) v1cgywmB338
Cla018227Cucurbita maxima (Rimu)cmawmB246
Cla018227Cucurbita maxima (Rimu)cmawmB581
Cla018227Cucurbita maxima (Rimu)cmawmB633
Cla018227Cucurbita maxima (Rimu)cmawmB806
Cla018227Cucurbita moschata (Rifu)cmowmB236
Cla018227Cucurbita moschata (Rifu)cmowmB575
Cla018227Cucurbita moschata (Rifu)cmowmB624
Cla018227Cucurbita moschata (Rifu)cmowmB717
Cla018227Cucurbita moschata (Rifu)cmowmB797
Cla018227Melon (DHL92) v3.5.1mewmB035
Cla018227Melon (DHL92) v3.5.1mewmB069
Cla018227Melon (DHL92) v3.5.1mewmB379
Cla018227Watermelon (Charleston Gray)wcgwmB034
Cla018227Watermelon (Charleston Gray)wcgwmB074
Cla018227Watermelon (Charleston Gray)wcgwmB386
Cla018227Cucumber (Chinese Long) v2cuwmB064
Cla018227Cucumber (Chinese Long) v2cuwmB265
Cla018227Cucumber (Chinese Long) v2cuwmB423
Cla018227Cucumber (Chinese Long) v2cuwmB424
Cla018227Cucurbita pepo (Zucchini)cpewmB086
Cla018227Cucurbita pepo (Zucchini)cpewmB286
Cla018227Cucurbita pepo (Zucchini)cpewmB618
Cla018227Cucurbita pepo (Zucchini)cpewmB721
Cla018227Cucurbita pepo (Zucchini)cpewmB848
Cla018227Bottle gourd (USVL1VR-Ls)lsiwmB209
Cla018227Bottle gourd (USVL1VR-Ls)lsiwmB211
Cla018227Bottle gourd (USVL1VR-Ls)lsiwmB267
Cla018227Bottle gourd (USVL1VR-Ls)lsiwmB330
Cla018227Cucumber (Gy14) v2cgybwmB250
Cla018227Cucumber (Gy14) v2cgybwmB314
Cla018227Cucumber (Gy14) v2cgybwmB396
Cla018227Cucumber (Gy14) v2cgybwmB397
Cla018227Melon (DHL92) v3.6.1medwmB034
Cla018227Melon (DHL92) v3.6.1medwmB068
Cla018227Melon (DHL92) v3.6.1medwmB374
Cla018227Silver-seed gourdcarwmB0151
Cla018227Silver-seed gourdcarwmB0300
Cla018227Silver-seed gourdcarwmB0325
Cla018227Silver-seed gourdcarwmB0933
Cla018227Silver-seed gourdcarwmB0999
Cla018227Cucumber (Chinese Long) v3cucwmB072
Cla018227Cucumber (Chinese Long) v3cucwmB450
Cla018227Cucumber (Chinese Long) v3cucwmB275
Cla018227Cucumber (Chinese Long) v3cucwmB448
Cla018227Watermelon (97103) v2wmwmbB285
Cla018227Watermelon (97103) v2wmwmbB290
Cla018227Watermelon (97103) v2wmwmbB302
Cla018227Watermelon (97103) v2wmwmbB304
Cla018227Wax gourdwgowmB051