Csa6G220980 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa6G220980
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionPentatricopeptide repeat-containing protein At3g18110, chloroplastic
LocationChr6 : 13053014 .. 13053568 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTACCATGTTGTTCCAGGATGCATCATTGCAAGGTTTTCCAGAATCTCCAAAATCAGTTGTTCTGATCACTGGAACAGCAGAATATAACATGATTTCACTCAATAGCACACTGAAAGTATGTCTTTGGGAGATGGGATCTCCTTTTCTACCTTGTAGAACACGTGGAGGTCTTCTTATAGCAAAAGCTCACTCTCTCAGGATGTGGCTAAAAGACTCCTCTTTTTGTTTGGACCTTGAGTTGAAAGATGCCCCAGCTCTTCCGGAATTTAATTCGATGAAGGTAATTGATGGATGCTTCATAAGACGAGGTCTTGTTCCTGCATTCAAGGACATAACTGAAAGATTGGGATTTGTGAGGCCTAAGAAATTCTCTAGGTTGGCTTTACTCCCTGATGAAAAGAGGGATAAGGTCATTAAAGCTGATTTAGAAGGTAGGAAAGAGAAGCTTGAAAAAGTAACACAACTTATCAAGTCAGGGAAGGTGAAGAGGATAATGAAGATTAAAAAGAGGGCCTACTATCGTAGACTCGATGCTCTAAAGAAAAAATAG

mRNA sequence

ATGTCTACCATGTTGTTCCAGGATGCATCATTGCAAGGTTTTCCAGAATCTCCAAAATCAGTTGTTCTGATCACTGGAACAGCAGAATATAACATGATTTCACTCAATAGCACACTGAAAGTATGTCTTTGGGAGATGGGATCTCCTTTTCTACCTTGTAGAACACGTGGAGGTCTTCTTATAGCAAAAGCTCACTCTCTCAGGATGTGGCTAAAAGACTCCTCTTTTTGTTTGGACCTTGAGTTGAAAGATGCCCCAGCTCTTCCGGAATTTAATTCGATGAAGGTAATTGATGGATGCTTCATAAGACGAGGTCTTGTTCCTGCATTCAAGGACATAACTGAAAGATTGGGATTTGTGAGGCCTAAGAAATTCTCTAGGTTGGCTTTACTCCCTGATGAAAAGAGGGATAAGGTCATTAAAGCTGATTTAGAAGGTAGGAAAGAGAAGCTTGAAAAAGTAACACAACTTATCAAGTCAGGGAAGGTGAAGAGGATAATGAAGATTAAAAAGAGGGCCTACTATCGTAGACTCGATGCTCTAAAGAAAAAATAG

Coding sequence (CDS)

ATGTCTACCATGTTGTTCCAGGATGCATCATTGCAAGGTTTTCCAGAATCTCCAAAATCAGTTGTTCTGATCACTGGAACAGCAGAATATAACATGATTTCACTCAATAGCACACTGAAAGTATGTCTTTGGGAGATGGGATCTCCTTTTCTACCTTGTAGAACACGTGGAGGTCTTCTTATAGCAAAAGCTCACTCTCTCAGGATGTGGCTAAAAGACTCCTCTTTTTGTTTGGACCTTGAGTTGAAAGATGCCCCAGCTCTTCCGGAATTTAATTCGATGAAGGTAATTGATGGATGCTTCATAAGACGAGGTCTTGTTCCTGCATTCAAGGACATAACTGAAAGATTGGGATTTGTGAGGCCTAAGAAATTCTCTAGGTTGGCTTTACTCCCTGATGAAAAGAGGGATAAGGTCATTAAAGCTGATTTAGAAGGTAGGAAAGAGAAGCTTGAAAAAGTAACACAACTTATCAAGTCAGGGAAGGTGAAGAGGATAATGAAGATTAAAAAGAGGGCCTACTATCGTAGACTCGATGCTCTAAAGAAAAAATAG

Protein sequence

MSTMLFQDASLQGFPESPKSVVLITGTAEYNMISLNSTLKVCLWEMGSPFLPCRTRGGLLIAKAHSLRMWLKDSSFCLDLELKDAPALPEFNSMKVIDGCFIRRGLVPAFKDITERLGFVRPKKFSRLALLPDEKRDKVIKADLEGRKEKLEKVTQLIKSGKVKRIMKIKKRAYYRRLDALKKK*
Homology
[Close]
BLAST of Csa6G220980 vs. Swiss-Prot
Match: PP241_ARATH (Pentatricopeptide repeat-containing protein At3g18110, chloroplastic OS=Arabidopsis thaliana GN=EMB1270 PE=2 SV=2)

HSP 1 Score: 241.5 bits (615), Expect = 7.3e-63
Identity = 118/149 (79.19%), Postives = 130/149 (87.25%), Query Frame = 1 

Query: 7    QDASLQGFPESPKSVVLITGTAEYNMISLNSTLKVCLWEMGSPFLPCRTRGGLLIAKAHS 66
            QDASL+G+PESPKSVVLITGTAEYN ISL+ TLK CLWEMGSPFLPC+TR GLL+AKAHS
Sbjct: 1270 QDASLEGYPESPKSVVLITGTAEYNGISLDKTLKACLWEMGSPFLPCKTRTGLLVAKAHS 1329

Query: 67   LRMWLKDSSFCLDLELKDAPALPEFNSMKVIDGCFIRRGLVPAFKDITERL-GFVRPKKF 126
            LRMWLKDS FC DLELKD+ +LPE NSM +IDGCFIRRGLVPAF  I ERL GFV PKKF
Sbjct: 1330 LRMWLKDSPFCFDLELKDSVSLPESNSMDLIDGCFIRRGLVPAFNHIKERLGGFVSPKKF 1389

Query: 127  SRLALLPDEKRDKVIKADLEGRKEKLEKV 155
            SRLALLPDE R++VIK D+EG ++KLEK+
Sbjct: 1390 SRLALLPDEMRERVIKTDIEGHRQKLEKM 1418

[Close]
BLAST of Csa6G220980 vs. TrEMBL
Match: A0A0A0KHH7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G220980 PE=4 SV=1)

HSP 1 Score: 366.3 bits (939), Expect = 2.2e-98
Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 1 

Query: 1   MSTMLFQDASLQGFPESPKSVVLITGTAEYNMISLNSTLKVCLWEMGSPFLPCRTRGGLL 60
           MSTMLFQDASLQGFPESPKSVVLITGTAEYNMISLNSTLKVCLWEMGSPFLPCRTRGGLL
Sbjct: 1   MSTMLFQDASLQGFPESPKSVVLITGTAEYNMISLNSTLKVCLWEMGSPFLPCRTRGGLL 60

Query: 61  IAKAHSLRMWLKDSSFCLDLELKDAPALPEFNSMKVIDGCFIRRGLVPAFKDITERLGFV 120
           IAKAHSLRMWLKDSSFCLDLELKDAPALPEFNSMKVIDGCFIRRGLVPAFKDITERLGFV
Sbjct: 61  IAKAHSLRMWLKDSSFCLDLELKDAPALPEFNSMKVIDGCFIRRGLVPAFKDITERLGFV 120

Query: 121 RPKKFSRLALLPDEKRDKVIKADLEGRKEKLEKVTQLIKSGKVKRIMKIKKRAYYRRLDA 180
           RPKKFSRLALLPDEKRDKVIKADLEGRKEKLEKVTQLIKSGKVKRIMKIKKRAYYRRLDA
Sbjct: 121 RPKKFSRLALLPDEKRDKVIKADLEGRKEKLEKVTQLIKSGKVKRIMKIKKRAYYRRLDA 180

Query: 181 LKKK 185
           LKKK
Sbjct: 181 LKKK 184

[Close]
BLAST of Csa6G220980 vs. TrEMBL
Match: W9RV15_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_024135 PE=4 SV=1)

HSP 1 Score: 268.5 bits (685), Expect = 6.2e-69
Identity = 129/165 (78.18%), Postives = 150/165 (90.91%), Query Frame = 1 

Query: 7    QDASLQGFPESPKSVVLITGTAEYNMISLNSTLKVCLWEMGSPFLPCRTRGGLLIAKAHS 66
            QDASLQG+PESPKSVVLITGT+EYN ISLNSTLK CLWEMGSPFLPCRTR GLL+AKAHS
Sbjct: 1307 QDASLQGYPESPKSVVLITGTSEYNSISLNSTLKACLWEMGSPFLPCRTRTGLLVAKAHS 1366

Query: 67   LRMWLKDSSFCLDLELKDAPALPEFNSMKVIDGCFIRRGLVPAFKDITERLGFVRPKKFS 126
            LR+WLKDS FCLDLELKDAP+LPE+NSM++++GCF+RRGLVPAFK++TERLG VRPKKFS
Sbjct: 1367 LRLWLKDSPFCLDLELKDAPSLPEYNSMQLMEGCFLRRGLVPAFKEVTERLGIVRPKKFS 1426

Query: 127  RLALLPDEKRDKVIKADLEGRKEKLEKVTQLIKSGKVKRIMKIKK 172
            RLA+L DEKR K I+AD+EGRK+KLEK+    K+G + R+ KIKK
Sbjct: 1427 RLAMLSDEKRTKAIEADIEGRKQKLEKIK---KNGGLGRMRKIKK 1468

[Close]
BLAST of Csa6G220980 vs. TrEMBL
Match: A0A162ATH0_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_006500 PE=4 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 1.6e-64
Identity = 123/150 (82.00%), Postives = 137/150 (91.33%), Query Frame = 1 

Query: 7    QDASLQGFPESPKSVVLITGTAEYNMISLNSTLKVCLWEMGSPFLPCRTRGGLLIAKAHS 66
            QDASL GFPESPKSVVLITGTAEYN +SLNST+K  LWEMGSPFLPC+TR GLLIAKAHS
Sbjct: 1218 QDASLNGFPESPKSVVLITGTAEYNQVSLNSTIKAFLWEMGSPFLPCKTRSGLLIAKAHS 1277

Query: 67   LRMWLKDSSFCLDLELKDAPALPEFNSMKVIDGCFIRRGLVPAFKDITERLGFVRPKKFS 126
            LRMWLKDS FC DLELK+A +LPE NSM++++GC+IRRGLVPAFKDITERLG VRPKKFS
Sbjct: 1278 LRMWLKDSPFCFDLELKNASSLPEENSMQLLEGCYIRRGLVPAFKDITERLGLVRPKKFS 1337

Query: 127  RLALLPDEKRDKVIKADLEGRKEKLEKVTQ 157
            RLALL DEKRDKVI+AD+ GRKE LEKV++
Sbjct: 1338 RLALLSDEKRDKVIEADIAGRKEMLEKVSK 1367

[Close]
BLAST of Csa6G220980 vs. TrEMBL
Match: A0A059DKK7_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A02953 PE=4 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 2.3e-63
Identity = 120/166 (72.29%), Postives = 147/166 (88.55%), Query Frame = 1 

Query: 7    QDASLQGFPESPKSVVLITGTAEYNMISLNSTLKVCLWEMGSPFLPCRTRGGLLIAKAHS 66
            QDASLQG+PESPKSVVLITGTAEYN++SLNSTLK  LWEMGSPFLPC+TR GLL+AKAHS
Sbjct: 1280 QDASLQGYPESPKSVVLITGTAEYNLVSLNSTLKAFLWEMGSPFLPCKTRTGLLVAKAHS 1339

Query: 67   LRMWLKDSSFCLDLELKDAPALPEFNSMKVIDGCFIRRGLVPAFKDITERLGFVRPKKFS 126
            LRMWLK+S FCLDLEL+DAP+LPEFNSM++IDGCF+RRG+V AFKDIT RLG + PKKFS
Sbjct: 1340 LRMWLKESPFCLDLELRDAPSLPEFNSMQLIDGCFMRRGIVLAFKDITGRLGVISPKKFS 1399

Query: 127  RLALLPDEKRDKVIKADLEGRKEKLEKVTQLIKSGKVKRIMKIKKR 173
            RLALL D++RDK I+AD+EG KEK +K+ + +K  + ++  K++K+
Sbjct: 1400 RLALLSDDRRDKAIQADIEGAKEKQDKMKK-VKLRRTEKEEKLQKK 1444

[Close]
BLAST of Csa6G220980 vs. TrEMBL
Match: A0A0K9QNS9_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_158580 PE=4 SV=1)

HSP 1 Score: 243.4 bits (620), Expect = 2.1e-61
Identity = 122/174 (70.11%), Postives = 146/174 (83.91%), Query Frame = 1 

Query: 5    LFQDASLQGFPESPKSVVLITGTAEYNMISLNSTLKVCLWEMGSPFLPCRTRGGLLIAKA 64
            L QDASL+G PESPKSVVLITGTAEYNM+SLNSTLK  LWEMGSPFLPCRTR G+LIAKA
Sbjct: 1297 LMQDASLEGSPESPKSVVLITGTAEYNMVSLNSTLKAYLWEMGSPFLPCRTRSGVLIAKA 1356

Query: 65   HSLRMWLKDSSFCLDLELKDAPALPEFNSMKVIDGCFIRRGLVPAFKDITERLGFVRPKK 124
            HSLRMWLKDS FC DLELK+A ALP+ NSM++++GCF+RRGLVPAF+DI  RLG VRPKK
Sbjct: 1357 HSLRMWLKDSPFCFDLELKNAHALPQSNSMQLMEGCFMRRGLVPAFRDIAGRLGVVRPKK 1416

Query: 125  FSRLALLPDEKRDKVIKADLEGRKEKLEKVTQLIKSGKV-KRIMKIKKRAYYRR 178
            F+RLALL DEKR+K I+AD++G K+KL+K+    K G + KR +  +K  + R+
Sbjct: 1417 FARLALLSDEKREKAIQADIDGSKDKLDKMKS--KGGVIMKRKLGHQKNKFIRK 1468

[Close]
BLAST of Csa6G220980 vs. TAIR10
Match: AT3G18110.1 (AT3G18110.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 241.5 bits (615), Expect = 4.1e-64
Identity = 118/149 (79.19%), Postives = 130/149 (87.25%), Query Frame = 1 

Query: 7    QDASLQGFPESPKSVVLITGTAEYNMISLNSTLKVCLWEMGSPFLPCRTRGGLLIAKAHS 66
            QDASL+G+PESPKSVVLITGTAEYN ISL+ TLK CLWEMGSPFLPC+TR GLL+AKAHS
Sbjct: 1270 QDASLEGYPESPKSVVLITGTAEYNGISLDKTLKACLWEMGSPFLPCKTRTGLLVAKAHS 1329

Query: 67   LRMWLKDSSFCLDLELKDAPALPEFNSMKVIDGCFIRRGLVPAFKDITERL-GFVRPKKF 126
            LRMWLKDS FC DLELKD+ +LPE NSM +IDGCFIRRGLVPAF  I ERL GFV PKKF
Sbjct: 1330 LRMWLKDSPFCFDLELKDSVSLPESNSMDLIDGCFIRRGLVPAFNHIKERLGGFVSPKKF 1389

Query: 127  SRLALLPDEKRDKVIKADLEGRKEKLEKV 155
            SRLALLPDE R++VIK D+EG ++KLEK+
Sbjct: 1390 SRLALLPDEMRERVIKTDIEGHRQKLEKM 1418

[Close]
BLAST of Csa6G220980 vs. NCBI nr
Match: gi|700192027|gb|KGN47231.1| (hypothetical protein Csa_6G220980 [Cucumis sativus])

HSP 1 Score: 366.3 bits (939), Expect = 3.1e-98
Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 1 

Query: 1   MSTMLFQDASLQGFPESPKSVVLITGTAEYNMISLNSTLKVCLWEMGSPFLPCRTRGGLL 60
           MSTMLFQDASLQGFPESPKSVVLITGTAEYNMISLNSTLKVCLWEMGSPFLPCRTRGGLL
Sbjct: 1   MSTMLFQDASLQGFPESPKSVVLITGTAEYNMISLNSTLKVCLWEMGSPFLPCRTRGGLL 60

Query: 61  IAKAHSLRMWLKDSSFCLDLELKDAPALPEFNSMKVIDGCFIRRGLVPAFKDITERLGFV 120
           IAKAHSLRMWLKDSSFCLDLELKDAPALPEFNSMKVIDGCFIRRGLVPAFKDITERLGFV
Sbjct: 61  IAKAHSLRMWLKDSSFCLDLELKDAPALPEFNSMKVIDGCFIRRGLVPAFKDITERLGFV 120

Query: 121 RPKKFSRLALLPDEKRDKVIKADLEGRKEKLEKVTQLIKSGKVKRIMKIKKRAYYRRLDA 180
           RPKKFSRLALLPDEKRDKVIKADLEGRKEKLEKVTQLIKSGKVKRIMKIKKRAYYRRLDA
Sbjct: 121 RPKKFSRLALLPDEKRDKVIKADLEGRKEKLEKVTQLIKSGKVKRIMKIKKRAYYRRLDA 180

Query: 181 LKKK 185
           LKKK
Sbjct: 181 LKKK 184

[Close]
BLAST of Csa6G220980 vs. NCBI nr
Match: gi|778714106|ref|XP_011657187.1| (PREDICTED: pentatricopeptide repeat-containing protein At3g18110, chloroplastic isoform X1 [Cucumis sativus])

HSP 1 Score: 355.1 bits (910), Expect = 7.2e-95
Identity = 178/178 (100.00%), Postives = 178/178 (100.00%), Query Frame = 1 

Query: 7    QDASLQGFPESPKSVVLITGTAEYNMISLNSTLKVCLWEMGSPFLPCRTRGGLLIAKAHS 66
            QDASLQGFPESPKSVVLITGTAEYNMISLNSTLKVCLWEMGSPFLPCRTRGGLLIAKAHS
Sbjct: 1293 QDASLQGFPESPKSVVLITGTAEYNMISLNSTLKVCLWEMGSPFLPCRTRGGLLIAKAHS 1352

Query: 67   LRMWLKDSSFCLDLELKDAPALPEFNSMKVIDGCFIRRGLVPAFKDITERLGFVRPKKFS 126
            LRMWLKDSSFCLDLELKDAPALPEFNSMKVIDGCFIRRGLVPAFKDITERLGFVRPKKFS
Sbjct: 1353 LRMWLKDSSFCLDLELKDAPALPEFNSMKVIDGCFIRRGLVPAFKDITERLGFVRPKKFS 1412

Query: 127  RLALLPDEKRDKVIKADLEGRKEKLEKVTQLIKSGKVKRIMKIKKRAYYRRLDALKKK 185
            RLALLPDEKRDKVIKADLEGRKEKLEKVTQLIKSGKVKRIMKIKKRAYYRRLDALKKK
Sbjct: 1413 RLALLPDEKRDKVIKADLEGRKEKLEKVTQLIKSGKVKRIMKIKKRAYYRRLDALKKK 1470

[Close]
BLAST of Csa6G220980 vs. NCBI nr
Match: gi|659127668|ref|XP_008463825.1| (PREDICTED: pentatricopeptide repeat-containing protein At3g18110, chloroplastic [Cucumis melo])

HSP 1 Score: 339.0 bits (868), Expect = 5.3e-90
Identity = 170/178 (95.51%), Postives = 173/178 (97.19%), Query Frame = 1 

Query: 7    QDASLQGFPESPKSVVLITGTAEYNMISLNSTLKVCLWEMGSPFLPCRTRGGLLIAKAHS 66
            QDASLQGFPESPKSVVLITGTAEYNMISLNSTLKVCLWEMGSPFLPCRTR GLLIAKAHS
Sbjct: 1290 QDASLQGFPESPKSVVLITGTAEYNMISLNSTLKVCLWEMGSPFLPCRTRSGLLIAKAHS 1349

Query: 67   LRMWLKDSSFCLDLELKDAPALPEFNSMKVIDGCFIRRGLVPAFKDITERLGFVRPKKFS 126
            LRMWLKDSSFCLDLELKDAPALPEFNSMKVI+GCFIRRGLVPAFKDIT RLGFVRPKKFS
Sbjct: 1350 LRMWLKDSSFCLDLELKDAPALPEFNSMKVINGCFIRRGLVPAFKDITGRLGFVRPKKFS 1409

Query: 127  RLALLPDEKRDKVIKADLEGRKEKLEKVTQLIKSGKVKRIMKIKKRAYYRRLDALKKK 185
            RLALLPDEKRDKVI+ADLEGRKEKLEKV QLI+SGK KRI KIKKRAYYRRLDALKKK
Sbjct: 1410 RLALLPDEKRDKVIEADLEGRKEKLEKVKQLIESGKAKRITKIKKRAYYRRLDALKKK 1467

[Close]
BLAST of Csa6G220980 vs. NCBI nr
Match: gi|645219013|ref|XP_008233573.1| (PREDICTED: pentatricopeptide repeat-containing protein At3g18110, chloroplastic-like [Prunus mume])

HSP 1 Score: 279.3 bits (713), Expect = 5.0e-72
Identity = 133/171 (77.78%), Postives = 155/171 (90.64%), Query Frame = 1 

Query: 7    QDASLQGFPESPKSVVLITGTAEYNMISLNSTLKVCLWEMGSPFLPCRTRGGLLIAKAHS 66
            QDASL+G+PESPKSVVLITGT+EYNM+SLNSTLK CLWEMGSPFLPC+TR GLL+AKAHS
Sbjct: 1316 QDASLEGYPESPKSVVLITGTSEYNMVSLNSTLKACLWEMGSPFLPCKTRSGLLVAKAHS 1375

Query: 67   LRMWLKDSSFCLDLELKDAPALPEFNSMKVIDGCFIRRGLVPAFKDITERLGFVRPKKFS 126
            LRMWLKDS FCLDLELKDAPALPE NS+++IDGCF+RRGLVPAFK+ITERLG VRPKKF+
Sbjct: 1376 LRMWLKDSPFCLDLELKDAPALPESNSIQLIDGCFLRRGLVPAFKEITERLGLVRPKKFA 1435

Query: 127  RLALLPDEKRDKVIKADLEGRKEKLEKVTQLIKSGKVKRIMKIKKRAYYRR 178
            RLALL DEKR+KVI++D+EGRKEKLEK+ +     +V RI K++KR Y R+
Sbjct: 1436 RLALLSDEKREKVIQSDIEGRKEKLEKMKENDNPRRVSRIKKLRKRKYVRQ 1486

[Close]
BLAST of Csa6G220980 vs. NCBI nr
Match: gi|645280074|ref|XP_008245022.1| (PREDICTED: pentatricopeptide repeat-containing protein At3g18110, chloroplastic-like [Prunus mume])

HSP 1 Score: 278.9 bits (712), Expect = 6.6e-72
Identity = 133/170 (78.24%), Postives = 154/170 (90.59%), Query Frame = 1 

Query: 7    QDASLQGFPESPKSVVLITGTAEYNMISLNSTLKVCLWEMGSPFLPCRTRGGLLIAKAHS 66
            QDASL+G+PESPKSVVLITGT+EYNM+SLNSTLK CLWEMGSPFLPC+TR GLL+AKAHS
Sbjct: 1316 QDASLEGYPESPKSVVLITGTSEYNMVSLNSTLKACLWEMGSPFLPCKTRSGLLVAKAHS 1375

Query: 67   LRMWLKDSSFCLDLELKDAPALPEFNSMKVIDGCFIRRGLVPAFKDITERLGFVRPKKFS 126
            LRMWLKDS FCLDLELKDAPALPE NS+++IDGCF+RRGLVPAFK+ITERLG VRPKKF+
Sbjct: 1376 LRMWLKDSPFCLDLELKDAPALPESNSIQLIDGCFLRRGLVPAFKEITERLGLVRPKKFA 1435

Query: 127  RLALLPDEKRDKVIKADLEGRKEKLEKVTQLIKSGKVKRIMKIKKRAYYR 177
            RLALL DEKR+KVI++D+EGRKEKLEK+ +     +V RI K++KR Y R
Sbjct: 1436 RLALLSDEKREKVIQSDIEGRKEKLEKMKENDNPRRVSRIKKLRKRKYVR 1485

The following BLAST results are available for this feature:
BLAST of Csa6G220980 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PP241_ARATH7.3e-6379.19Pentatricopeptide repeat-containing protein At3g18110, chloroplastic OS=Arabidop... [more]
BLAST of Csa6G220980 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KHH7_CUCSA2.2e-98100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G220980 PE=4 SV=1[more]
W9RV15_9ROSA6.2e-6978.18Uncharacterized protein OS=Morus notabilis GN=L484_024135 PE=4 SV=1[more]
A0A162ATH0_DAUCA1.6e-6482.00Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_006500 PE=4 SV=1[more]
A0A059DKK7_EUCGR2.3e-6372.29Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A02953 PE=4 SV=1[more]
A0A0K9QNS9_SPIOL2.1e-6170.11Uncharacterized protein OS=Spinacia oleracea GN=SOVF_158580 PE=4 SV=1[more]
BLAST of Csa6G220980 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G18110.14.1e-6479.19 Pentatricopeptide repeat (PPR) superfamily protein[more]
BLAST of Csa6G220980 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700192027|gb|KGN47231.1|3.1e-98100.00hypothetical protein Csa_6G220980 [Cucumis sativus][more]
gi|778714106|ref|XP_011657187.1|7.2e-95100.00PREDICTED: pentatricopeptide repeat-containing protein At3g18110, chloroplastic ... [more]
gi|659127668|ref|XP_008463825.1|5.3e-9095.51PREDICTED: pentatricopeptide repeat-containing protein At3g18110, chloroplastic ... [more]
gi|645219013|ref|XP_008233573.1|5.0e-7277.78PREDICTED: pentatricopeptide repeat-containing protein At3g18110, chloroplastic-... [more]
gi|645280074|ref|XP_008245022.1|6.6e-7278.24PREDICTED: pentatricopeptide repeat-containing protein At3g18110, chloroplastic-... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0005975 carbohydrate metabolic process
biological_process GO:0009793 embryo development ending in seed dormancy
biological_process GO:0090305 nucleic acid phosphodiester bond hydrolysis
biological_process GO:0009451 RNA modification
cellular_component GO:0005575 cellular_component
cellular_component GO:0043231 intracellular membrane-bounded organelle
molecular_function GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds
molecular_function GO:0008568 microtubule-severing ATPase activity
molecular_function GO:0004519 endonuclease activity
molecular_function GO:0003723 RNA binding
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU109016cucumber EST collection version 3.0transcribed_cluster
CU157334cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa6G220980.1Csa6G220980.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU157334CU157334transcribed_cluster
CU109016CU109016transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa6G220980Cla013397Watermelon (97103) v1cuwmB520
Csa6G220980Lsi10G014660Bottle gourd (USVL1VR-Ls)culsiB419
Csa6G220980MELO3C025691.2Melon (DHL92) v3.6.1cumedB413
Csa6G220980Cla97C02G045200Watermelon (97103) v2cuwmbB436
Csa6G220980Bhi10G000668Wax gourdcuwgoB611
Csa6G220980CSPI06G15190Wild cucumber (PI 183967)cpicuB314
Csa6G220980CsGy6G015120Cucumber (Gy14) v2cgybcuB287
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa6G220980Melon (DHL92) v3.5.1cumeB433