CSPI06G15190 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI06G15190
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionPentatricopeptide repeat-containing protein, putative
LocationChr6 : 13359669 .. 13362512 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTACCATGTTGTTCCAGGATGCATCATTGCAAGGTTTTCCAGAATCTCCAAAATCAGTTGTTCTGATCACTGGAACAGCAGAATATAACATGATTTCACTCAATAGCACACTGAAAGTATGTCTTTGGGAGATGGGATCTCCTTTTCTACCTTGTAGAACACGTGGAGGTCTTCTTATAGCAAAAGCTCACTCTCTCAGGATGTGGCTAAAAGACTCCTCTTTTTGTTTGGACCTTGAGTTGAAAGATGCCCCAGCTCTTCCGGAATTTAATTCGATGAAGGTAATTGATGGATGCTTCATAAGACGAGGTCTTGTTCCTGCATTCAAGGACATAACTGAAAGATTGGGATTTGTGAGGCCTAAGAAATTCTCTAGGTTGGCTTTACTCCCTGATGAAAAGAGGGATAAGGTCATTAAAGCTGATTTAGAAGGTAGGAAAGAGAAGCTTGAAAAAGTAACACAACTTATCAAGTCAGGGAAGGTGAAGAGGATAATGAAGATTAAAAAGAGGGCCTACTATCGTAGACTCGATGCTCTAAAGAAAAAATAGAAAACTTTAGATGGTATAGATTATGGTAATCAAGTTATTCGTTTCTTGGCCCCTTATCATTGCTAGCCATGAACGACAACTTCAACATTACTTTCAAATTCCAACAAAGTACCCTCTCTACACAACTTGGCGTTGATACAAAACTTGTGCCATTTATTTTCATACAGTTGATCCTCTTGCAAGCTGAAGAATTGAAAAAACAAAAAGGTTTGAATTTCTTTATTTCTTTTATTTTAAATCAATTGAAGAACCATCATTTCCTGCATAGGATAGTTGAACATTTTTTCTTGGTTGAATGAACAATGCTCAATCATCATTTTTTTAATTAACTTATAATAGTTGCATTCACTTATAAATTTCTTTGTTTAGTTACCCATTTTGTAAATCAAGCCATTTTTTTTATGACTAAAGAAAGTAGTTTTTGTTTTTGGACTTTGACTAAGAGTTCGGATGTCTTTTTAAGACCTCATAGTCCAATTCTTTTTCAATACAATTTTTCGAAGAAATAGTTTGAGTGAGCTCGTTATGGATTAACATTTTCATGATGATTAAAAGAATCATGGGATTCATCTTTTCCTTATGATGTTCTGGCACAGAATTTCTCTAATTGTAATACCCTGTTTAACGATTCGTTGTTTCAGGTTATGTATTCCTCAGCAATGTGTTCTCTCTCATGATGATTAAAAGAATCATGGGATTCATCTGTTCCTTATTGTTTCTGGCACAGAATTTCTCTAATTGTAATACCCTGTTTAACGATTTGTTGTTTCAGGTTATGTATTCCTCAGCAATGTATTCTCACTAAGAGCTTGCCAAAATTATATCAGAACATCATTCATGAGACCATTATACCATGTGCTATACGTTGGAGGAAAAATGAAAGGACCTTTATGATCTTTATAGGTATATGAGTTACTTCTCTCATTATCAATTGGTTTTGAGATGGAACCTATGTTAATTTATAGTATAATCCATCTTGTCAGACAAGGATTTGTACCATTTCATTGTTCTGCACTAGAGAAAGTAAGTTCTCAATTAAATTTTCTTCTTTACTATTTTATTTTACACTGTCATGGTTGCCTATTAAAACTGTCTTCTTTGGTTAGAGCTGCTATTTTTTTGGAATTAGTGGTTTTTTTGTTTTTTTTGTTTTTTTTTTTTTGTGTATAGGTTTTTAATTCTAAATTTTGAGTAGATACCCATCTTTTAGCAAAATGTTTAGGTCCAGTTTGGTAATCAATTTATTTTGAAAATTAAGTTTCCACTTTCTACTTATCCAAACACTAAAATAAAGTAGTTTCTGAAAACTTGTTTTTGTTTTTAGATTTTGATGAAGAACTCAAATGTTTCATTAAGGAAAGTGAATACCATGGTATGGAATTTGGGAGAAAATGAACATAAAATTCAAAACACAAAATGATTATCAAATGGGGCCTTGGCTATCCACTGTATTTGTCACTAGTTACTGAGATTTTCATTCATTTAGTTCCTGTTGCTAGATATCATAATTCATGCTTTTTGCAAGTCATGGATGCTCCCGGTCGTACCTGTTGTTTGCTCTCAATATATTTATTTATTTGGTCAGGCTCAGGTATTGTTTCTGATCTTTATTCGTGATAATATCAGTTGAAATCTGGAAGACGACATTGTGAAATATTTGGGACGATGGTAGGGGATCATTTGTTTGCATGGTAAAGTTGCAATCAAGGGGCAACCACAGGTACGTCTCTTGCAGAGAAGAAATCATAGAGATTTTTCCAGAAGCTCAGTTGAGCCAATGCTACTGATATAATCTAGAATATGTTCTCCGCCTTTACTTAATTTCTTTGTAAGTAAGCGGTGAAGTGATCCTAATTGTATGCGCATTCACACAACAGGCACTTCAAGCGGCAGTCAAACGCAGGCATGGATGAAACGAACTCGTATATTGGGTTCTGCTCCTTTCAGTTCTTTTAGAGAAGGAAAGACGGATGCTCAACTAAGCTCCCTATGTTCTTCTGCTTGCAGTTGATTGTTGGCGGTATATTTTGGTCAACCTCTACCTGCTTCCAAACATAAAAACTAAAATGTGCTCAACTTAGAAGGCCTTTGACTCCGTGTTTGAGTGTAGGAGTTGAAAAATGTGAAGTTGTGAACTCAATTTTCTGTTGGTTCAAGGACTTCATGGACCTTACACCAGGTGTACATAAGTAGGATTGAATCCATAAATTATGGATCAATTCAAAGTCTAGGGTTGACAAAAACTGAAGAAATATTTAGACAAATCACTTAGTTTAGACATGATTTTCC

mRNA sequence

ATGTCTACCATGTTGTTCCAGGATGCATCATTGCAAGGTTTTCCAGAATCTCCAAAATCAGTTGTTCTGATCACTGGAACAGCAGAATATAACATGATTTCACTCAATAGCACACTGAAAGTATGTCTTTGGGAGATGGGATCTCCTTTTCTACCTTGTAGAACACGTGGAGGTCTTCTTATAGCAAAAGCTCACTCTCTCAGGATGTGGCTAAAAGACTCCTCTTTTTGTTTGGACCTTGAGTTGAAAGATGCCCCAGCTCTTCCGGAATTTAATTCGATGAAGGTAATTGATGGATGCTTCATAAGACGAGGTCTTGTTCCTGCATTCAAGGACATAACTGAAAGATTGGGATTTGTGAGGCCTAAGAAATTCTCTAGGTTGGCTTTACTCCCTGATGAAAAGAGGGATAAGGTCATTAAAGCTGATTTAGAAGGTAGGAAAGAGAAGCTTGAAAAAGTAACACAACTTATCAAGTCAGGGAAGGTGAAGAGGATAATGAAGATTAAAAAGAGGGCCTACTATCGTAGACTCGATGCTCTAAAGAAAAAATAG

Coding sequence (CDS)

ATGTCTACCATGTTGTTCCAGGATGCATCATTGCAAGGTTTTCCAGAATCTCCAAAATCAGTTGTTCTGATCACTGGAACAGCAGAATATAACATGATTTCACTCAATAGCACACTGAAAGTATGTCTTTGGGAGATGGGATCTCCTTTTCTACCTTGTAGAACACGTGGAGGTCTTCTTATAGCAAAAGCTCACTCTCTCAGGATGTGGCTAAAAGACTCCTCTTTTTGTTTGGACCTTGAGTTGAAAGATGCCCCAGCTCTTCCGGAATTTAATTCGATGAAGGTAATTGATGGATGCTTCATAAGACGAGGTCTTGTTCCTGCATTCAAGGACATAACTGAAAGATTGGGATTTGTGAGGCCTAAGAAATTCTCTAGGTTGGCTTTACTCCCTGATGAAAAGAGGGATAAGGTCATTAAAGCTGATTTAGAAGGTAGGAAAGAGAAGCTTGAAAAAGTAACACAACTTATCAAGTCAGGGAAGGTGAAGAGGATAATGAAGATTAAAAAGAGGGCCTACTATCGTAGACTCGATGCTCTAAAGAAAAAATAG
Homology
[Close]
BLAST of CSPI06G15190 vs. Swiss-Prot
Match: PP241_ARATH (Pentatricopeptide repeat-containing protein At3g18110, chloroplastic OS=Arabidopsis thaliana GN=EMB1270 PE=2 SV=2)

HSP 1 Score: 241.9 bits (616), Expect = 5.6e-63
Identity = 118/149 (79.19%), Postives = 132/149 (88.59%), Query Frame = 1 

Query: 7    QDASLQGFPESPKSVVLITGTAEYNMISLNSTLKVCLWEMGSPFLPCRTRGGLLIAKAHS 66
            QDASL+G+PESPKSVVLITGTAEYN ISL+ TLK CLWEMGSPFLPC+TR GLL+AKAHS
Sbjct: 1270 QDASLEGYPESPKSVVLITGTAEYNGISLDKTLKACLWEMGSPFLPCKTRTGLLVAKAHS 1329

Query: 67   LRMWLKDSSFCLDLELKDAPALPEFNSMKVIDGCFIRRGLVPAFKDITERL-GFVRPKKF 126
            LRMWLKDS FC DLELKD+ +LPE NSM +IDGCFIRRGLVPAF  I ERL GFV PKKF
Sbjct: 1330 LRMWLKDSPFCFDLELKDSVSLPESNSMDLIDGCFIRRGLVPAFNHIKERLGGFVSPKKF 1389

Query: 127  SRLALLPDEKRDKVIKADLEGRKEKLEKV 155
            SRLALLPDE R++VIK D+EG ++KLEK+
Sbjct: 1390 SRLALLPDEMRERVIKTDIEGHRQKLEKM 1418

[Close]
BLAST of CSPI06G15190 vs. TrEMBL
Match: A0A0A0KHH7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G220980 PE=4 SV=1)

HSP 1 Score: 362.1 bits (928), Expect = 4.1e-97
Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 1 

Query: 1   MSTMLFQDASLQGFPESPKSVVLITGTAEYNMISLNSTLKVCLWEMGSPFLPCRTRGGLL 60
           MSTMLFQDASLQGFPESPKSVVLITGTAEYNMISLNSTLKVCLWEMGSPFLPCRTRGGLL
Sbjct: 1   MSTMLFQDASLQGFPESPKSVVLITGTAEYNMISLNSTLKVCLWEMGSPFLPCRTRGGLL 60

Query: 61  IAKAHSLRMWLKDSSFCLDLELKDAPALPEFNSMKVIDGCFIRRGLVPAFKDITERLGFV 120
           IAKAHSLRMWLKDSSFCLDLELKDAPALPEFNSMKVIDGCFIRRGLVPAFKDITERLGFV
Sbjct: 61  IAKAHSLRMWLKDSSFCLDLELKDAPALPEFNSMKVIDGCFIRRGLVPAFKDITERLGFV 120

Query: 121 RPKKFSRLALLPDEKRDKVIKADLEGRKEKLEKVTQLIKSGKVKRIMKIKKRAYYRRLDA 180
           RPKKFSRLALLPDEKRDKVIKADLEGRKEKLEKVTQLIKSGKVKRIMKIKKRAYYRRLDA
Sbjct: 121 RPKKFSRLALLPDEKRDKVIKADLEGRKEKLEKVTQLIKSGKVKRIMKIKKRAYYRRLDA 180

Query: 181 LKKK 185
           LKKK
Sbjct: 181 LKKK 184

[Close]
BLAST of CSPI06G15190 vs. TrEMBL
Match: M5WF65_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa023974mg PE=4 SV=1)

HSP 1 Score: 276.2 bits (705), Expect = 3.0e-71
Identity = 133/169 (78.70%), Postives = 153/169 (90.53%), Query Frame = 1 

Query: 8    DASLQGFPESPKSVVLITGTAEYNMISLNSTLKVCLWEMGSPFLPCRTRGGLLIAKAHSL 67
            DASL+G+PESPKSVVLITGT+EYNM+SLNSTLK CLWEMGSPFLPC+TR GLL+AKAHSL
Sbjct: 1167 DASLEGYPESPKSVVLITGTSEYNMVSLNSTLKACLWEMGSPFLPCKTRSGLLVAKAHSL 1226

Query: 68   RMWLKDSSFCLDLELKDAPALPEFNSMKVIDGCFIRRGLVPAFKDITERLGFVRPKKFSR 127
            RMWLKDS FCLDLELKDAPALPE NSM++IDGCF+RRGLVPAFK+ITERLG VRPKKF+R
Sbjct: 1227 RMWLKDSPFCLDLELKDAPALPESNSMQLIDGCFLRRGLVPAFKEITERLGLVRPKKFAR 1286

Query: 128  LALLPDEKRDKVIKADLEGRKEKLEKVTQLIKSGKVKRIMKIKKRAYYR 177
            LALL DEKR+KVI++D+EGRKEKLEK+ +     +V RI K++KR Y R
Sbjct: 1287 LALLSDEKREKVIQSDIEGRKEKLEKMKENDNPRRVSRIKKLRKRKYVR 1335

[Close]
BLAST of CSPI06G15190 vs. TrEMBL
Match: A0A0D2QFV8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G050800 PE=4 SV=1)

HSP 1 Score: 271.9 bits (694), Expect = 5.6e-70
Identity = 130/171 (76.02%), Postives = 153/171 (89.47%), Query Frame = 1 

Query: 7    QDASLQGFPESPKSVVLITGTAEYNMISLNSTLKVCLWEMGSPFLPCRTRGGLLIAKAHS 66
            QDASLQG+PESPKSVVLITGT+EYNM+SLNSTLK CLWEMGSPFLPC+TR GLL+AKAHS
Sbjct: 1284 QDASLQGYPESPKSVVLITGTSEYNMVSLNSTLKACLWEMGSPFLPCKTRSGLLVAKAHS 1343

Query: 67   LRMWLKDSSFCLDLELKDAPALPEFNSMKVIDGCFIRRGLVPAFKDITERLGFVRPKKFS 126
            LRMWLKDS FCLDLELK+AP+LPE NSM++I+GCFIRRGLVPAFKDITERLG VRPKKF+
Sbjct: 1344 LRMWLKDSPFCLDLELKNAPSLPELNSMQLIEGCFIRRGLVPAFKDITERLGLVRPKKFA 1403

Query: 127  RLALLPDEKRDKVIKADLEGRKEKLEKVTQLIKSGKVKRIMKIKKRAYYRR 178
            RLALL DEKR+K I+AD+EG KEKLEK+   + S + + + +++KR + RR
Sbjct: 1404 RLALLSDEKREKAIEADIEGGKEKLEKLKSKVGSKRTRVVKQLRKRKFIRR 1454

[Close]
BLAST of CSPI06G15190 vs. TrEMBL
Match: A0A0D2MJG1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G050800 PE=4 SV=1)

HSP 1 Score: 271.9 bits (694), Expect = 5.6e-70
Identity = 130/171 (76.02%), Postives = 153/171 (89.47%), Query Frame = 1 

Query: 7    QDASLQGFPESPKSVVLITGTAEYNMISLNSTLKVCLWEMGSPFLPCRTRGGLLIAKAHS 66
            QDASLQG+PESPKSVVLITGT+EYNM+SLNSTLK CLWEMGSPFLPC+TR GLL+AKAHS
Sbjct: 1255 QDASLQGYPESPKSVVLITGTSEYNMVSLNSTLKACLWEMGSPFLPCKTRSGLLVAKAHS 1314

Query: 67   LRMWLKDSSFCLDLELKDAPALPEFNSMKVIDGCFIRRGLVPAFKDITERLGFVRPKKFS 126
            LRMWLKDS FCLDLELK+AP+LPE NSM++I+GCFIRRGLVPAFKDITERLG VRPKKF+
Sbjct: 1315 LRMWLKDSPFCLDLELKNAPSLPELNSMQLIEGCFIRRGLVPAFKDITERLGLVRPKKFA 1374

Query: 127  RLALLPDEKRDKVIKADLEGRKEKLEKVTQLIKSGKVKRIMKIKKRAYYRR 178
            RLALL DEKR+K I+AD+EG KEKLEK+   + S + + + +++KR + RR
Sbjct: 1375 RLALLSDEKREKAIEADIEGGKEKLEKLKSKVGSKRTRVVKQLRKRKFIRR 1425

[Close]
BLAST of CSPI06G15190 vs. TrEMBL
Match: A5AVZ0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_005527 PE=4 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 1.8e-68
Identity = 134/171 (78.36%), Postives = 152/171 (88.89%), Query Frame = 1 

Query: 6    FQDASLQGFPESPKSVVLITGTAEYNMISLNSTLKVCLWEMGSPFLPCRTRGGLLIAKAH 65
            +QDASLQG+P SPKSVVLITGTAEYNM+SLNSTLK  LWEMGSPFLPC+TR GLL+AKAH
Sbjct: 1316 WQDASLQGYPLSPKSVVLITGTAEYNMVSLNSTLKAFLWEMGSPFLPCKTRSGLLVAKAH 1375

Query: 66   SLRMWLKDSSFCLDLELKDAPALPEFNSMKVIDGCFIRRGLVPAFKDITERLGFVRPKKF 125
            SLRMWLKDSSFCLDLELKDAP+LPE NSM++++GCF+RRGLVPAFKDITERLG VRPKKF
Sbjct: 1376 SLRMWLKDSSFCLDLELKDAPSLPESNSMQLMEGCFLRRGLVPAFKDITERLGDVRPKKF 1435

Query: 126  SRLALLPDEKRDKVIKADLEGRKEKLEKVTQLIKSGKVKRIMKIKKRAYYR 177
            +RLALLPDEKRDKVI+AD+EG KEKLEK+    K   VKR  K+ +R + R
Sbjct: 1436 ARLALLPDEKRDKVIRADIEGGKEKLEKMK---KKVGVKRRRKLVRRKFIR 1483

[Close]
BLAST of CSPI06G15190 vs. TAIR10
Match: AT3G18110.1 (AT3G18110.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 241.9 bits (616), Expect = 3.1e-64
Identity = 118/149 (79.19%), Postives = 132/149 (88.59%), Query Frame = 1 

Query: 7    QDASLQGFPESPKSVVLITGTAEYNMISLNSTLKVCLWEMGSPFLPCRTRGGLLIAKAHS 66
            QDASL+G+PESPKSVVLITGTAEYN ISL+ TLK CLWEMGSPFLPC+TR GLL+AKAHS
Sbjct: 1270 QDASLEGYPESPKSVVLITGTAEYNGISLDKTLKACLWEMGSPFLPCKTRTGLLVAKAHS 1329

Query: 67   LRMWLKDSSFCLDLELKDAPALPEFNSMKVIDGCFIRRGLVPAFKDITERL-GFVRPKKF 126
            LRMWLKDS FC DLELKD+ +LPE NSM +IDGCFIRRGLVPAF  I ERL GFV PKKF
Sbjct: 1330 LRMWLKDSPFCFDLELKDSVSLPESNSMDLIDGCFIRRGLVPAFNHIKERLGGFVSPKKF 1389

Query: 127  SRLALLPDEKRDKVIKADLEGRKEKLEKV 155
            SRLALLPDE R++VIK D+EG ++KLEK+
Sbjct: 1390 SRLALLPDEMRERVIKTDIEGHRQKLEKM 1418

[Close]
BLAST of CSPI06G15190 vs. NCBI nr
Match: gi|700192027|gb|KGN47231.1| (hypothetical protein Csa_6G220980 [Cucumis sativus])

HSP 1 Score: 362.1 bits (928), Expect = 5.9e-97
Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 1 

Query: 1   MSTMLFQDASLQGFPESPKSVVLITGTAEYNMISLNSTLKVCLWEMGSPFLPCRTRGGLL 60
           MSTMLFQDASLQGFPESPKSVVLITGTAEYNMISLNSTLKVCLWEMGSPFLPCRTRGGLL
Sbjct: 1   MSTMLFQDASLQGFPESPKSVVLITGTAEYNMISLNSTLKVCLWEMGSPFLPCRTRGGLL 60

Query: 61  IAKAHSLRMWLKDSSFCLDLELKDAPALPEFNSMKVIDGCFIRRGLVPAFKDITERLGFV 120
           IAKAHSLRMWLKDSSFCLDLELKDAPALPEFNSMKVIDGCFIRRGLVPAFKDITERLGFV
Sbjct: 61  IAKAHSLRMWLKDSSFCLDLELKDAPALPEFNSMKVIDGCFIRRGLVPAFKDITERLGFV 120

Query: 121 RPKKFSRLALLPDEKRDKVIKADLEGRKEKLEKVTQLIKSGKVKRIMKIKKRAYYRRLDA 180
           RPKKFSRLALLPDEKRDKVIKADLEGRKEKLEKVTQLIKSGKVKRIMKIKKRAYYRRLDA
Sbjct: 121 RPKKFSRLALLPDEKRDKVIKADLEGRKEKLEKVTQLIKSGKVKRIMKIKKRAYYRRLDA 180

Query: 181 LKKK 185
           LKKK
Sbjct: 181 LKKK 184

[Close]
BLAST of CSPI06G15190 vs. NCBI nr
Match: gi|778714106|ref|XP_011657187.1| (PREDICTED: pentatricopeptide repeat-containing protein At3g18110, chloroplastic isoform X1 [Cucumis sativus])

HSP 1 Score: 351.3 bits (900), Expect = 1.0e-93
Identity = 178/178 (100.00%), Postives = 178/178 (100.00%), Query Frame = 1 

Query: 7    QDASLQGFPESPKSVVLITGTAEYNMISLNSTLKVCLWEMGSPFLPCRTRGGLLIAKAHS 66
            QDASLQGFPESPKSVVLITGTAEYNMISLNSTLKVCLWEMGSPFLPCRTRGGLLIAKAHS
Sbjct: 1293 QDASLQGFPESPKSVVLITGTAEYNMISLNSTLKVCLWEMGSPFLPCRTRGGLLIAKAHS 1352

Query: 67   LRMWLKDSSFCLDLELKDAPALPEFNSMKVIDGCFIRRGLVPAFKDITERLGFVRPKKFS 126
            LRMWLKDSSFCLDLELKDAPALPEFNSMKVIDGCFIRRGLVPAFKDITERLGFVRPKKFS
Sbjct: 1353 LRMWLKDSSFCLDLELKDAPALPEFNSMKVIDGCFIRRGLVPAFKDITERLGFVRPKKFS 1412

Query: 127  RLALLPDEKRDKVIKADLEGRKEKLEKVTQLIKSGKVKRIMKIKKRAYYRRLDALKKK 185
            RLALLPDEKRDKVIKADLEGRKEKLEKVTQLIKSGKVKRIMKIKKRAYYRRLDALKKK
Sbjct: 1413 RLALLPDEKRDKVIKADLEGRKEKLEKVTQLIKSGKVKRIMKIKKRAYYRRLDALKKK 1470

[Close]
BLAST of CSPI06G15190 vs. NCBI nr
Match: gi|659127668|ref|XP_008463825.1| (PREDICTED: pentatricopeptide repeat-containing protein At3g18110, chloroplastic [Cucumis melo])

HSP 1 Score: 335.1 bits (858), Expect = 7.7e-89
Identity = 170/178 (95.51%), Postives = 173/178 (97.19%), Query Frame = 1 

Query: 7    QDASLQGFPESPKSVVLITGTAEYNMISLNSTLKVCLWEMGSPFLPCRTRGGLLIAKAHS 66
            QDASLQGFPESPKSVVLITGTAEYNMISLNSTLKVCLWEMGSPFLPCRTR GLLIAKAHS
Sbjct: 1290 QDASLQGFPESPKSVVLITGTAEYNMISLNSTLKVCLWEMGSPFLPCRTRSGLLIAKAHS 1349

Query: 67   LRMWLKDSSFCLDLELKDAPALPEFNSMKVIDGCFIRRGLVPAFKDITERLGFVRPKKFS 126
            LRMWLKDSSFCLDLELKDAPALPEFNSMKVI+GCFIRRGLVPAFKDIT RLGFVRPKKFS
Sbjct: 1350 LRMWLKDSSFCLDLELKDAPALPEFNSMKVINGCFIRRGLVPAFKDITGRLGFVRPKKFS 1409

Query: 127  RLALLPDEKRDKVIKADLEGRKEKLEKVTQLIKSGKVKRIMKIKKRAYYRRLDALKKK 185
            RLALLPDEKRDKVI+ADLEGRKEKLEKV QLI+SGK KRI KIKKRAYYRRLDALKKK
Sbjct: 1410 RLALLPDEKRDKVIEADLEGRKEKLEKVKQLIESGKAKRITKIKKRAYYRRLDALKKK 1467

[Close]
BLAST of CSPI06G15190 vs. NCBI nr
Match: gi|645280074|ref|XP_008245022.1| (PREDICTED: pentatricopeptide repeat-containing protein At3g18110, chloroplastic-like [Prunus mume])

HSP 1 Score: 276.6 bits (706), Expect = 3.3e-71
Identity = 133/170 (78.24%), Postives = 154/170 (90.59%), Query Frame = 1 

Query: 7    QDASLQGFPESPKSVVLITGTAEYNMISLNSTLKVCLWEMGSPFLPCRTRGGLLIAKAHS 66
            QDASL+G+PESPKSVVLITGT+EYNM+SLNSTLK CLWEMGSPFLPC+TR GLL+AKAHS
Sbjct: 1316 QDASLEGYPESPKSVVLITGTSEYNMVSLNSTLKACLWEMGSPFLPCKTRSGLLVAKAHS 1375

Query: 67   LRMWLKDSSFCLDLELKDAPALPEFNSMKVIDGCFIRRGLVPAFKDITERLGFVRPKKFS 126
            LRMWLKDS FCLDLELKDAPALPE NS+++IDGCF+RRGLVPAFK+ITERLG VRPKKF+
Sbjct: 1376 LRMWLKDSPFCLDLELKDAPALPESNSIQLIDGCFLRRGLVPAFKEITERLGLVRPKKFA 1435

Query: 127  RLALLPDEKRDKVIKADLEGRKEKLEKVTQLIKSGKVKRIMKIKKRAYYR 177
            RLALL DEKR+KVI++D+EGRKEKLEK+ +     +V RI K++KR Y R
Sbjct: 1436 RLALLSDEKREKVIQSDIEGRKEKLEKMKENDNPRRVSRIKKLRKRKYVR 1485

[Close]
BLAST of CSPI06G15190 vs. NCBI nr
Match: gi|645219013|ref|XP_008233573.1| (PREDICTED: pentatricopeptide repeat-containing protein At3g18110, chloroplastic-like [Prunus mume])

HSP 1 Score: 276.6 bits (706), Expect = 3.3e-71
Identity = 133/171 (77.78%), Postives = 155/171 (90.64%), Query Frame = 1 

Query: 7    QDASLQGFPESPKSVVLITGTAEYNMISLNSTLKVCLWEMGSPFLPCRTRGGLLIAKAHS 66
            QDASL+G+PESPKSVVLITGT+EYNM+SLNSTLK CLWEMGSPFLPC+TR GLL+AKAHS
Sbjct: 1316 QDASLEGYPESPKSVVLITGTSEYNMVSLNSTLKACLWEMGSPFLPCKTRSGLLVAKAHS 1375

Query: 67   LRMWLKDSSFCLDLELKDAPALPEFNSMKVIDGCFIRRGLVPAFKDITERLGFVRPKKFS 126
            LRMWLKDS FCLDLELKDAPALPE NS+++IDGCF+RRGLVPAFK+ITERLG VRPKKF+
Sbjct: 1376 LRMWLKDSPFCLDLELKDAPALPESNSIQLIDGCFLRRGLVPAFKEITERLGLVRPKKFA 1435

Query: 127  RLALLPDEKRDKVIKADLEGRKEKLEKVTQLIKSGKVKRIMKIKKRAYYRR 178
            RLALL DEKR+KVI++D+EGRKEKLEK+ +     +V RI K++KR Y R+
Sbjct: 1436 RLALLSDEKREKVIQSDIEGRKEKLEKMKENDNPRRVSRIKKLRKRKYVRQ 1486

The following BLAST results are available for this feature:
BLAST of CSPI06G15190 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PP241_ARATH5.6e-6379.19Pentatricopeptide repeat-containing protein At3g18110, chloroplastic OS=Arabidop... [more]
BLAST of CSPI06G15190 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KHH7_CUCSA4.1e-97100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G220980 PE=4 SV=1[more]
M5WF65_PRUPE3.0e-7178.70Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa023974mg PE=4 SV=1[more]
A0A0D2QFV8_GOSRA5.6e-7076.02Uncharacterized protein OS=Gossypium raimondii GN=B456_003G050800 PE=4 SV=1[more]
A0A0D2MJG1_GOSRA5.6e-7076.02Uncharacterized protein OS=Gossypium raimondii GN=B456_003G050800 PE=4 SV=1[more]
A5AVZ0_VITVI1.8e-6878.36Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_005527 PE=4 SV=1[more]
BLAST of CSPI06G15190 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G18110.13.1e-6479.19 Pentatricopeptide repeat (PPR) superfamily protein[more]
BLAST of CSPI06G15190 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700192027|gb|KGN47231.1|5.9e-97100.00hypothetical protein Csa_6G220980 [Cucumis sativus][more]
gi|778714106|ref|XP_011657187.1|1.0e-93100.00PREDICTED: pentatricopeptide repeat-containing protein At3g18110, chloroplastic ... [more]
gi|659127668|ref|XP_008463825.1|7.7e-8995.51PREDICTED: pentatricopeptide repeat-containing protein At3g18110, chloroplastic ... [more]
gi|645280074|ref|XP_008245022.1|3.3e-7178.24PREDICTED: pentatricopeptide repeat-containing protein At3g18110, chloroplastic-... [more]
gi|645219013|ref|XP_008233573.1|3.3e-7177.78PREDICTED: pentatricopeptide repeat-containing protein At3g18110, chloroplastic-... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0005975 carbohydrate metabolic process
biological_process GO:0009793 embryo development ending in seed dormancy
biological_process GO:0090305 nucleic acid phosphodiester bond hydrolysis
biological_process GO:0009451 RNA modification
cellular_component GO:0005575 cellular_component
cellular_component GO:0043231 intracellular membrane-bounded organelle
molecular_function GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds
molecular_function GO:0008568 microtubule-severing ATPase activity
molecular_function GO:0004519 endonuclease activity
molecular_function GO:0003723 RNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI06G15190.1CSPI06G15190.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI06G15190Cla013397Watermelon (97103) v1cpiwmB537
CSPI06G15190Csa6G220980Cucumber (Chinese Long) v2cpicuB314
CSPI06G15190Lsi10G014660Bottle gourd (USVL1VR-Ls)cpilsiB422
CSPI06G15190MELO3C025691.2Melon (DHL92) v3.6.1cpimedB422
CSPI06G15190CsaV3_6G018920Cucumber (Chinese Long) v3cpicucB370
CSPI06G15190Cla97C02G045200Watermelon (97103) v2cpiwmbB460
CSPI06G15190Bhi10G000668Wax gourdcpiwgoB616
CSPI06G15190CsGy6G015120Cucumber (Gy14) v2cgybcpiB293
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI06G15190Melon (DHL92) v3.5.1cpimeB427