Csa6G206350 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa6G206350
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Inosine triphosphate pyrophosphatase; contains IPR002637 (Ham1-like protein)
Location	Chr6 : 12829869 .. 12830356 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGTTTTTGGAGTTTGATCCAATCTCCTGATCAAAAATTTGAGGAATTCGATTCCAAAATGGCGACAAGAATTGGATTGGTGCTTCCTTCTAGCCGGTGACGTTTTGTGACCGGCAACGCCAAGAAGCTCGAGGAAGTTTGAGCAATATTGGGAAATTCAATTCCTTTTCGTTCTCTCAAGCTTGACTTGACGAAGTTGCAAGGCGAGCCAGAAGATATATCGAAAGAGAAGCTCGGTTGGCTGCTATTCAGGTTAATGGGTCGGTTCTGGTGGAAGATACATGCCTCTGCTTCAATGCTTTGAAGGGTCTTCCTAGGTTATTGCTTGGGGCTGGAGAAATTGGGGAAACACAGAAACAAGCTAGTACTTCTGTCGCTGGTGGACTACTCCATTTGTATCTTGTTATGCTGCTACCATTAGAGTTGGAGAAAGAGTTAATCCATATGATTATCATTCAACTGTAAGAGCTCTCAATTCCAAAGGCC

mRNA sequence

ATGTGTTTTTGGAGTTTGATCCAATCTCCTGATCAAAAATTTGAGGAATTCGATTCCAAAATGGCGACAAGAATTGGATTGGTGCTTCCTTCTAGCCGGCGAGCCAGAAGATATATCGAAAGAGAAGCTCGGTTGGCTGCTATTCAGGTTAATGGGTCGGTTCTGGTGGAAGATACATGCCTCTGCTTCAATGCTTTGAAGGGTCTTCCTAGGTTATTGCTTGGGGCTGGAGAAATTGGGGAAACACAGAAACAAGCTAGTACTTCTGTCGCTGGTGGACTACTCCATTTGTATCTTGTTATGCTGCTACCATTAGAGTTGGAGAAAGAGTTAATCCATATGATTATCATTCAACTGTAA

Coding sequence (CDS)

ATGTGTTTTTGGAGTTTGATCCAATCTCCTGATCAAAAATTTGAGGAATTCGATTCCAAAATGGCGACAAGAATTGGATTGGTGCTTCCTTCTAGCCGGCGAGCCAGAAGATATATCGAAAGAGAAGCTCGGTTGGCTGCTATTCAGGTTAATGGGTCGGTTCTGGTGGAAGATACATGCCTCTGCTTCAATGCTTTGAAGGGTCTTCCTAGGTTATTGCTTGGGGCTGGAGAAATTGGGGAAACACAGAAACAAGCTAGTACTTCTGTCGCTGGTGGACTACTCCATTTGTATCTTGTTATGCTGCTACCATTAGAGTTGGAGAAAGAGTTAATCCATATGATTATCATTCAACTGTAA

Protein sequence

MCFWSLIQSPDQKFEEFDSKMATRIGLVLPSSRRARRYIEREARLAAIQVNGSVLVEDTCLCFNALKGLPRLLLGAGEIGETQKQASTSVAGGLLHLYLVMLLPLELEKELIHMIIIQL*

Homology

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BLAST of Csa6G206350 vs. Swiss-Prot
Match: ITPA_MAIZE (Inosine triphosphate pyrophosphatase OS=Zea mays PE=2 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 4.3e-08
Identity = 31/45 (68.89%), Postives = 32/45 (71.11%), Query Frame = 1


Query: 27 LVLPSSRRARRYIERE-ARLAAIQVNGSVLVEDTCLCFNALKGLP 71
          L LP  +    YI +E AR+AA QVNG VLVEDTCLCFNALKGLP
Sbjct: 40 LDLPELQGEPEYISKEKARIAASQVNGPVLVEDTCLCFNALKGLP 84

[Close]

BLAST of Csa6G206350 vs. Swiss-Prot
Match: ITPA_VITVI (Inosine triphosphate pyrophosphatase OS=Vitis vinifera GN=VIT_05s0051g00580 PE=2 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 7.4e-08
Identity = 27/31 (87.10%), Postives = 28/31 (90.32%), Query Frame = 1


Query: 40 EREARLAAIQVNGSVLVEDTCLCFNALKGLP 71
          + +ARLAAIQVNG VLVEDTCLCFNALKGLP
Sbjct: 59 KEKARLAAIQVNGPVLVEDTCLCFNALKGLP 89

[Close]

BLAST of Csa6G206350 vs. Swiss-Prot
Match: ITPA_ARATH (Inosine triphosphate pyrophosphatase OS=Arabidopsis thaliana GN=At4g13720 PE=2 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 4.8e-07
Identity = 25/31 (80.65%), Postives = 28/31 (90.32%), Query Frame = 1


Query: 40 EREARLAAIQVNGSVLVEDTCLCFNALKGLP 71
          + +ARLAA+QV+G VLVEDTCLCFNALKGLP
Sbjct: 58 KEKARLAALQVDGPVLVEDTCLCFNALKGLP 88

[Close]

BLAST of Csa6G206350 vs. Swiss-Prot
Match: ITPA_SORBI (Inosine triphosphate pyrophosphatase OS=Sorghum bicolor GN=Sb01g020160 PE=2 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 6.3e-07
Identity = 25/31 (80.65%), Postives = 26/31 (83.87%), Query Frame = 1


Query: 40 EREARLAAIQVNGSVLVEDTCLCFNALKGLP 71
          + +AR+AA QVNG VLVEDTCLCFNALKGLP
Sbjct: 54 KEKARMAASQVNGPVLVEDTCLCFNALKGLP 84

[Close]

BLAST of Csa6G206350 vs. Swiss-Prot
Match: ITPA_ORYSJ (Inosine triphosphate pyrophosphatase OS=Oryza sativa subsp. japonica GN=Os10g0457500 PE=2 SV=2)

HSP 1 Score: 55.1 bits (131), Expect = 6.3e-07
Identity = 25/31 (80.65%), Postives = 26/31 (83.87%), Query Frame = 1


Query: 40 EREARLAAIQVNGSVLVEDTCLCFNALKGLP 71
          + +AR+AA QVNG VLVEDTCLCFNALKGLP
Sbjct: 58 KEKARMAASQVNGPVLVEDTCLCFNALKGLP 88

[Close]

BLAST of Csa6G206350 vs. TrEMBL
Match: A0A0A0KFK7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G206350 PE=4 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 1.1e-58
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 1


Query: 1   MCFWSLIQSPDQKFEEFDSKMATRIGLVLPSSRRARRYIEREARLAAIQVNGSVLVEDTC 60
           MCFWSLIQSPDQKFEEFDSKMATRIGLVLPSSRRARRYIEREARLAAIQVNGSVLVEDTC
Sbjct: 1   MCFWSLIQSPDQKFEEFDSKMATRIGLVLPSSRRARRYIEREARLAAIQVNGSVLVEDTC 60

Query: 61  LCFNALKGLPRLLLGAGEIGETQKQASTSVAGGLLHLYLVMLLPLELEKELIHMIIIQL 120
           LCFNALKGLPRLLLGAGEIGETQKQASTSVAGGLLHLYLVMLLPLELEKELIHMIIIQL
Sbjct: 61  LCFNALKGLPRLLLGAGEIGETQKQASTSVAGGLLHLYLVMLLPLELEKELIHMIIIQL 119

[Close]

BLAST of Csa6G206350 vs. TrEMBL
Match: A0A096Q2W1_MAIZE (Uncharacterized protein OS=Zea mays GN=pco148511 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 4.8e-06
Identity = 31/45 (68.89%), Postives = 34/45 (75.56%), Query Frame = 1


Query: 27 LVLPSSRRARRYIERE-ARLAAIQVNGSVLVEDTCLCFNALKGLP 71
          L LP  +    YI +E AR+AA QVNG VLVEDTCLCFNALKGLP
Sbjct: 40 LDLPELQGEPEYISKEKARIAASQVNGPVLVEDTCLCFNALKGLP 84

[Close]

BLAST of Csa6G206350 vs. TrEMBL
Match: R0FB22_9BRAS (Uncharacterized protein (Fragment) OS=Capsella rubella GN=CARUB_v100058091mg PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 8.2e-06
Identity = 27/33 (81.82%), Postives = 30/33 (90.91%), Query Frame = 1


Query: 40 EREARLAAIQVNGSVLVEDTCLCFNALKGLPRL 73
          + +ARLAA+QVNG VLVEDTCLCFNALKGLP L
Sbjct: 56 KEKARLAALQVNGPVLVEDTCLCFNALKGLPGL 88

[Close]

BLAST of Csa6G206350 vs. TrEMBL
Match: A5AZ69_VITVI (Inosine triphosphate pyrophosphatase OS=Vitis vinifera GN=VITISV_004933 PE=3 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 8.2e-06
Identity = 27/31 (87.10%), Postives = 29/31 (93.55%), Query Frame = 1


Query: 40 EREARLAAIQVNGSVLVEDTCLCFNALKGLP 71
          + +ARLAAIQVNG VLVEDTCLCFNALKGLP
Sbjct: 59 KEKARLAAIQVNGPVLVEDTCLCFNALKGLP 89

[Close]

BLAST of Csa6G206350 vs. TrEMBL
Match: A0A067EY21_CITSI (Inosine triphosphate pyrophosphatase OS=Citrus sinensis GN=CISIN_1g028718mg PE=3 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 8.2e-06
Identity = 27/31 (87.10%), Postives = 29/31 (93.55%), Query Frame = 1


Query: 40 EREARLAAIQVNGSVLVEDTCLCFNALKGLP 71
          + +ARLAAIQVNG VLVEDTCLCFNALKGLP
Sbjct: 58 KEKARLAAIQVNGPVLVEDTCLCFNALKGLP 88

[Close]

BLAST of Csa6G206350 vs. TAIR10
Match: AT4G13720.1 (AT4G13720.1 Inosine triphosphate pyrophosphatase family protein)

HSP 1 Score: 55.5 bits (132), Expect = 2.7e-08
Identity = 25/31 (80.65%), Postives = 28/31 (90.32%), Query Frame = 1


Query: 40 EREARLAAIQVNGSVLVEDTCLCFNALKGLP 71
          + +ARLAA+QV+G VLVEDTCLCFNALKGLP
Sbjct: 58 KEKARLAALQVDGPVLVEDTCLCFNALKGLP 88

[Close]

BLAST of Csa6G206350 vs. NCBI nr
Match: gi|700192008|gb|KGN47212.1| (hypothetical protein Csa_6G206350 [Cucumis sativus])

HSP 1 Score: 233.8 bits (595), Expect = 1.6e-58
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 1


Query: 1   MCFWSLIQSPDQKFEEFDSKMATRIGLVLPSSRRARRYIEREARLAAIQVNGSVLVEDTC 60
           MCFWSLIQSPDQKFEEFDSKMATRIGLVLPSSRRARRYIEREARLAAIQVNGSVLVEDTC
Sbjct: 1   MCFWSLIQSPDQKFEEFDSKMATRIGLVLPSSRRARRYIEREARLAAIQVNGSVLVEDTC 60

Query: 61  LCFNALKGLPRLLLGAGEIGETQKQASTSVAGGLLHLYLVMLLPLELEKELIHMIIIQL 120
           LCFNALKGLPRLLLGAGEIGETQKQASTSVAGGLLHLYLVMLLPLELEKELIHMIIIQL
Sbjct: 61  LCFNALKGLPRLLLGAGEIGETQKQASTSVAGGLLHLYLVMLLPLELEKELIHMIIIQL 119

[Close]

BLAST of Csa6G206350 vs. NCBI nr
Match: gi|226508376|ref|NP_001150363.1| (inosine triphosphate pyrophosphatase [Zea mays])

HSP 1 Score: 58.9 bits (141), Expect = 6.9e-06
Identity = 31/45 (68.89%), Postives = 34/45 (75.56%), Query Frame = 1


Query: 27 LVLPSSRRARRYIERE-ARLAAIQVNGSVLVEDTCLCFNALKGLP 71
          L LP  +    YI +E AR+AA QVNG VLVEDTCLCFNALKGLP
Sbjct: 40 LDLPELQGEPEYISKEKARIAASQVNGPVLVEDTCLCFNALKGLP 84

[Close]

BLAST of Csa6G206350 vs. NCBI nr
Match: gi|414871223|tpg|DAA49780.1| (TPA: hypothetical protein ZEAMMB73_946257 [Zea mays])

HSP 1 Score: 58.9 bits (141), Expect = 6.9e-06
Identity = 31/45 (68.89%), Postives = 34/45 (75.56%), Query Frame = 1


Query: 27 LVLPSSRRARRYIERE-ARLAAIQVNGSVLVEDTCLCFNALKGLP 71
          L LP  +    YI +E AR+AA QVNG VLVEDTCLCFNALKGLP
Sbjct: 40 LDLPELQGEPEYISKEKARIAASQVNGPVLVEDTCLCFNALKGLP 84

The following BLAST results are available for this feature:

BLAST of Csa6G206350 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ITPA_MAIZE	4.3e-08	68.89	Inosine triphosphate pyrophosphatase OS=Zea mays PE=2 SV=1	[more]
ITPA_VITVI	7.4e-08	87.10	Inosine triphosphate pyrophosphatase OS=Vitis vinifera GN=VIT_05s0051g00580 PE=2...	[more]
ITPA_ARATH	4.8e-07	80.65	Inosine triphosphate pyrophosphatase OS=Arabidopsis thaliana GN=At4g13720 PE=2 S...	[more]
ITPA_SORBI	6.3e-07	80.65	Inosine triphosphate pyrophosphatase OS=Sorghum bicolor GN=Sb01g020160 PE=2 SV=1	[more]
ITPA_ORYSJ	6.3e-07	80.65	Inosine triphosphate pyrophosphatase OS=Oryza sativa subsp. japonica GN=Os10g045...	[more]

BLAST of Csa6G206350 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KFK7_CUCSA	1.1e-58	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G206350 PE=4 SV=1	[more]
A0A096Q2W1_MAIZE	4.8e-06	68.89	Uncharacterized protein OS=Zea mays GN=pco148511 PE=4 SV=1	[more]
R0FB22_9BRAS	8.2e-06	81.82	Uncharacterized protein (Fragment) OS=Capsella rubella GN=CARUB_v100058091mg PE=...	[more]
A5AZ69_VITVI	8.2e-06	87.10	Inosine triphosphate pyrophosphatase OS=Vitis vinifera GN=VITISV_004933 PE=3 SV=...	[more]
A0A067EY21_CITSI	8.2e-06	87.10	Inosine triphosphate pyrophosphatase OS=Citrus sinensis GN=CISIN_1g028718mg PE=3...	[more]

BLAST of Csa6G206350 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G13720.1	2.7e-08	80.65	Inosine triphosphate pyrophosphatase family protein	[more]

BLAST of Csa6G206350 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700192008\|gb\|KGN47212.1\|	1.6e-58	100.00	hypothetical protein Csa_6G206350 [Cucumis sativus]	[more]
gi\|226508376\|ref\|NP_001150363.1\|	6.9e-06	68.89	inosine triphosphate pyrophosphatase [Zea mays]	[more]
gi\|414871223\|tpg\|DAA49780.1\|	6.9e-06	68.89	TPA: hypothetical protein ZEAMMB73_946257 [Zea mays]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa6G206350.1	Csa6G206350.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa6G206350	Cucurbita maxima (Rimu)	cmacuB381
Csa6G206350	Cucurbita maxima (Rimu)	cmacuB558
Csa6G206350	Cucurbita maxima (Rimu)	cmacuB907
Csa6G206350	Cucurbita moschata (Rifu)	cmocuB549
Csa6G206350	Melon (DHL92) v3.5.1	cumeB419
Csa6G206350	Watermelon (Charleston Gray)	cuwcgB446
Csa6G206350	Watermelon (97103) v1	cuwmB520
Csa6G206350	Cucurbita pepo (Zucchini)	cpecuB153
Csa6G206350	Cucurbita pepo (Zucchini)	cpecuB295
Csa6G206350	Bottle gourd (USVL1VR-Ls)	culsiB419
Csa6G206350	Cucumber (Gy14) v2	cgybcuB287
Csa6G206350	Melon (DHL92) v3.6.1	cumedB434
Csa6G206350	Silver-seed gourd	carcuB0080
Csa6G206350	Silver-seed gourd	carcuB0374
Csa6G206350	Watermelon (97103) v2	cuwmbB436
Csa6G206350	Wax gourd	cuwgoB611