Csa6G124110 (gene) Cucumber (Chinese Long) v2
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGACGAAACCCTTGCACACCCAAACCCTAGATCTGCTTGCCGTCACTCACCGTCGTTCAAAGCCGCCTCTCCTCGCGGTCATGTTTTTATTTATGGTATGTTAAAATCCGCTTGTACAAAATCTTCTGATATTCTACTTTTATTTTTGTAGAATTCTGGTAAAATTGCACCATTGGATGAGATCATCAAAATGAAGGAGCAGTATCGATTTGGTGTTTTGTTGGATGAAAGCAACTCTTTTGGCGTACATGGCTGTACTTGA ATGACGAAACCCTTGCACACCCAAACCCTAGATCTGCTTGCCGTCACTCACCGTCGTTCAAAGCCGCCTCTCCTCGCGGTCATGTTTTTATTTATGAATTCTGGTAAAATTGCACCATTGGATGAGATCATCAAAATGAAGGAGCAGTATCGATTTGGTGTTTTGTTGGATGAAAGCAACTCTTTTGGCGTACATGGCTGTACTTGA ATGACGAAACCCTTGCACACCCAAACCCTAGATCTGCTTGCCGTCACTCACCGTCGTTCAAAGCCGCCTCTCCTCGCGGTCATGTTTTTATTTATGAATTCTGGTAAAATTGCACCATTGGATGAGATCATCAAAATGAAGGAGCAGTATCGATTTGGTGTTTTGTTGGATGAAAGCAACTCTTTTGGCGTACATGGCTGTACTTGA MTKPLHTQTLDLLAVTHRRSKPPLLAVMFLFMNSGKIAPLDEIIKMKEQYRFGVLLDESNSFGVHGCT*
BLAST of Csa6G124110 vs. Swiss-Prot
Match: LCB1_ARATH (Long chain base biosynthesis protein 1 OS=Arabidopsis thaliana GN=LCB1 PE=1 SV=1) HSP 1 Score: 63.5 bits (153), Expect = 1.0e-09 Identity = 32/60 (53.33%), Postives = 42/60 (70.00%), Query Frame = 1
BLAST of Csa6G124110 vs. Swiss-Prot
Match: LCB1B_ORYSJ (Long chain base biosynthesis protein 1b OS=Oryza sativa subsp. japonica GN=Os02g0806900 PE=2 SV=1) HSP 1 Score: 57.8 bits (138), Expect = 5.6e-08 Identity = 29/60 (48.33%), Postives = 43/60 (71.67%), Query Frame = 1
BLAST of Csa6G124110 vs. Swiss-Prot
Match: LCB1A_ORYSJ (Long chain base biosynthesis protein 1a OS=Oryza sativa subsp. japonica GN=Os03g0252800 PE=2 SV=1) HSP 1 Score: 57.8 bits (138), Expect = 5.6e-08 Identity = 29/60 (48.33%), Postives = 43/60 (71.67%), Query Frame = 1
BLAST of Csa6G124110 vs. Swiss-Prot
Match: LCB1C_ORYSJ (Long chain base biosynthesis protein 1c OS=Oryza sativa subsp. japonica GN=Os10g0189600 PE=2 SV=2) HSP 1 Score: 57.4 bits (137), Expect = 7.2e-08 Identity = 25/42 (59.52%), Postives = 34/42 (80.95%), Query Frame = 1
BLAST of Csa6G124110 vs. Swiss-Prot
Match: SPTC1_DICDI (Serine palmitoyltransferase 1 OS=Dictyostelium discoideum GN=sptA PE=3 SV=1) HSP 1 Score: 51.2 bits (121), Expect = 5.2e-06 Identity = 23/39 (58.97%), Postives = 29/39 (74.36%), Query Frame = 1
BLAST of Csa6G124110 vs. TrEMBL
Match: A0A0A0KG23_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G124110 PE=4 SV=1) HSP 1 Score: 140.2 bits (352), Expect = 9.5e-31 Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 1
BLAST of Csa6G124110 vs. TrEMBL
Match: A0A0A0LKR2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G356100 PE=4 SV=1) HSP 1 Score: 71.6 bits (174), Expect = 4.1e-10 Identity = 38/62 (61.29%), Postives = 45/62 (72.58%), Query Frame = 1
BLAST of Csa6G124110 vs. TrEMBL
Match: A0A0J8BH19_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_1g016420 PE=4 SV=1) HSP 1 Score: 67.0 bits (162), Expect = 1.0e-08 Identity = 32/62 (51.61%), Postives = 47/62 (75.81%), Query Frame = 1
BLAST of Csa6G124110 vs. TrEMBL
Match: D7TB41_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0130g00350 PE=4 SV=1) HSP 1 Score: 66.2 bits (160), Expect = 1.7e-08 Identity = 34/62 (54.84%), Postives = 47/62 (75.81%), Query Frame = 1
BLAST of Csa6G124110 vs. TrEMBL
Match: A0A0D2Q2Z2_GOSRA (Uncharacterized protein (Fragment) OS=Gossypium raimondii GN=B456_002G090700 PE=4 SV=1) HSP 1 Score: 65.9 bits (159), Expect = 2.3e-08 Identity = 35/63 (55.56%), Postives = 47/63 (74.60%), Query Frame = 1
BLAST of Csa6G124110 vs. TAIR10
Match: AT4G36480.1 (AT4G36480.1 long-chain base1) HSP 1 Score: 63.5 bits (153), Expect = 5.7e-11 Identity = 32/60 (53.33%), Postives = 42/60 (70.00%), Query Frame = 1
BLAST of Csa6G124110 vs. NCBI nr
Match: gi|700191492|gb|KGN46696.1| (hypothetical protein Csa_6G124110 [Cucumis sativus]) HSP 1 Score: 140.2 bits (352), Expect = 1.4e-30 Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 1
BLAST of Csa6G124110 vs. NCBI nr
Match: gi|449450243|ref|XP_004142873.1| (PREDICTED: long chain base biosynthesis protein 1 [Cucumis sativus]) HSP 1 Score: 71.6 bits (174), Expect = 5.9e-10 Identity = 38/62 (61.29%), Postives = 45/62 (72.58%), Query Frame = 1
BLAST of Csa6G124110 vs. NCBI nr
Match: gi|659087711|ref|XP_008444597.1| (PREDICTED: long chain base biosynthesis protein 1 isoform X1 [Cucumis melo]) HSP 1 Score: 71.6 bits (174), Expect = 5.9e-10 Identity = 38/62 (61.29%), Postives = 45/62 (72.58%), Query Frame = 1
BLAST of Csa6G124110 vs. NCBI nr
Match: gi|659087713|ref|XP_008444598.1| (PREDICTED: long chain base biosynthesis protein 1 isoform X2 [Cucumis melo]) HSP 1 Score: 71.6 bits (174), Expect = 5.9e-10 Identity = 38/62 (61.29%), Postives = 45/62 (72.58%), Query Frame = 1
BLAST of Csa6G124110 vs. NCBI nr
Match: gi|727547502|ref|XP_010446789.1| (PREDICTED: long chain base biosynthesis protein 1-like [Camelina sativa]) HSP 1 Score: 67.0 bits (162), Expect = 1.5e-08 Identity = 33/62 (53.23%), Postives = 46/62 (74.19%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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