CSPI06G10040 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI06G10040
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionLong chain base biosynthesis protein 1
LocationChr6 : 8664489 .. 8664751 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACGAAACCCTTGCACACCCAAACCCTAGATCTGCTTGCCGTCACTCATCGTCGTTCAAAGCCGCCTCTCCTCGCGGTCATGTTTTTATTTATGGTATGTTAAAATCCGCTTGTACAAAATCTTCTGATATTCCACTTTTATTTTTGTAGAATTCTGGTAAAATTGCACCATTGGATGAGATCATCAAATTGAAGGAGCAGTATCGATTTGGTGTTTTGTTGGATGAAAGCAACTCTTTTGGCGTACATGGCTGTACTTGA

mRNA sequence

ATGACGAAACCCTTGCACACCCAAACCCTAGATCTGCTTGCCGTCACTCATCGTCGTTCAAAGCCGCCTCTCCTCGCGGTCATGTTTTTATTTATGAATTCTGGTAAAATTGCACCATTGGATGAGATCATCAAATTGAAGGAGCAGTATCGATTTGGTGTTTTGTTGGATGAAAGCAACTCTTTTGGCGTACATGGCTGTACTTGA

Coding sequence (CDS)

ATGACGAAACCCTTGCACACCCAAACCCTAGATCTGCTTGCCGTCACTCATCGTCGTTCAAAGCCGCCTCTCCTCGCGGTCATGTTTTTATTTATGAATTCTGGTAAAATTGCACCATTGGATGAGATCATCAAATTGAAGGAGCAGTATCGATTTGGTGTTTTGTTGGATGAAAGCAACTCTTTTGGCGTACATGGCTGTACTTGA
Homology
[Close]
BLAST of CSPI06G10040 vs. Swiss-Prot
Match: LCB1_ARATH (Long chain base biosynthesis protein 1 OS=Arabidopsis thaliana GN=LCB1 PE=1 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 2.7e-10
Identity = 33/60 (55.00%), Postives = 44/60 (73.33%), Query Frame = 1 

Query: 9   TLDLLAVTHRRSKP--PLLAVMFLFMNSGKIAPLDEIIKLKEQYRFGVLLDESNSFGVHG 67
           TL+ +   ++RSK     +    ++ NSG+IAPLDEI+KLKE+YRF V+LDESNSFGV G
Sbjct: 231 TLEKIMTKYKRSKNLRRYIVAEAVYQNSGQIAPLDEIVKLKEKYRFRVILDESNSFGVLG 290

[Close]
BLAST of CSPI06G10040 vs. Swiss-Prot
Match: LCB1A_ORYSJ (Long chain base biosynthesis protein 1a OS=Oryza sativa subsp. japonica GN=Os03g0252800 PE=2 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 1.5e-08
Identity = 30/60 (50.00%), Postives = 45/60 (75.00%), Query Frame = 1 

Query: 9   TLDLLAVTHRRSKP--PLLAVMFLFMNSGKIAPLDEIIKLKEQYRFGVLLDESNSFGVHG 67
           TL+ L   ++R++     + V  ++ NSG+IAPLDEI++LKE+YRF V+L+ES+SFGV G
Sbjct: 233 TLEKLTRGNKRAEKIRRYIVVESIYQNSGQIAPLDEIVRLKEKYRFRVILEESHSFGVLG 292

[Close]
BLAST of CSPI06G10040 vs. Swiss-Prot
Match: LCB1C_ORYSJ (Long chain base biosynthesis protein 1c OS=Oryza sativa subsp. japonica GN=Os10g0189600 PE=2 SV=2)

HSP 1 Score: 59.7 bits (143), Expect = 1.5e-08
Identity = 26/42 (61.90%), Postives = 36/42 (85.71%), Query Frame = 1 

Query: 25  LAVMFLFMNSGKIAPLDEIIKLKEQYRFGVLLDESNSFGVHG 67
           + V  ++ NSG+IAPLDEI++LKE+YRF V+L+ES+SFGV G
Sbjct: 252 IVVEAIYQNSGQIAPLDEIVRLKEKYRFRVILEESHSFGVLG 293

[Close]
BLAST of CSPI06G10040 vs. Swiss-Prot
Match: LCB1B_ORYSJ (Long chain base biosynthesis protein 1b OS=Oryza sativa subsp. japonica GN=Os02g0806900 PE=2 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 1.5e-08
Identity = 30/60 (50.00%), Postives = 45/60 (75.00%), Query Frame = 1 

Query: 9   TLDLLAVTHRRSKP--PLLAVMFLFMNSGKIAPLDEIIKLKEQYRFGVLLDESNSFGVHG 67
           TL+ L   ++R++     + V  ++ NSG+IAPLDEI++LKE+YRF V+L+ES+SFGV G
Sbjct: 233 TLEKLTHGNKRTEKIRRYIVVEAIYQNSGQIAPLDEIVRLKEKYRFRVILEESHSFGVLG 292

[Close]
BLAST of CSPI06G10040 vs. Swiss-Prot
Match: SPTC1_DICDI (Serine palmitoyltransferase 1 OS=Dictyostelium discoideum GN=sptA PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 8.0e-07
Identity = 23/39 (58.97%), Postives = 31/39 (79.49%), Query Frame = 1 

Query: 30  LFMNSGKIAPLDEIIKLKEQYRFGVLLDESNSFGVHGCT 69
           L+ NSG IAPL +I+K KEQY+F +++DES+S GV G T
Sbjct: 245 LYYNSGTIAPLPQILKFKEQYKFRLIMDESHSVGVLGST 283

[Close]
BLAST of CSPI06G10040 vs. TrEMBL
Match: A0A0A0KG23_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G124110 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 1.2e-30
Identity = 67/68 (98.53%), Postives = 68/68 (100.00%), Query Frame = 1 

Query: 1  MTKPLHTQTLDLLAVTHRRSKPPLLAVMFLFMNSGKIAPLDEIIKLKEQYRFGVLLDESN 60
          MTKPLHTQTLDLLAVTHRRSKPPLLAVMFLFMNSGKIAPLDEIIK+KEQYRFGVLLDESN
Sbjct: 1  MTKPLHTQTLDLLAVTHRRSKPPLLAVMFLFMNSGKIAPLDEIIKMKEQYRFGVLLDESN 60

Query: 61 SFGVHGCT 69
          SFGVHGCT
Sbjct: 61 SFGVHGCT 68

[Close]
BLAST of CSPI06G10040 vs. TrEMBL
Match: A0A0A0LKR2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G356100 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 8.3e-11
Identity = 39/62 (62.90%), Postives = 45/62 (72.58%), Query Frame = 1 

Query: 9   TLDLLAVTHRRSKP--PLLAVMFLFMNSGKIAPLDEIIKLKEQYRFGVLLDESNSFGVHG 68
           TL+     + R+K     + V  ++ NSGKIAPLDEIIKLKEQYRF VLLDESNSFGV G
Sbjct: 231 TLEKTTAGNERAKKLRRYIVVEAVYQNSGKIAPLDEIIKLKEQYRFRVLLDESNSFGVLG 290

[Close]
BLAST of CSPI06G10040 vs. TrEMBL
Match: A0A0J8BH19_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_1g016420 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 2.1e-09
Identity = 33/62 (53.23%), Postives = 47/62 (75.81%), Query Frame = 1 

Query: 9   TLDLLAVTHRRSKP--PLLAVMFLFMNSGKIAPLDEIIKLKEQYRFGVLLDESNSFGVHG 68
           TL+ + + ++R K     + +  ++ NSG+IAPLDEIIKLKE+YRF +L+DESNSFGV G
Sbjct: 231 TLEKITIENKRPKQIRRYIVIEGVYQNSGQIAPLDEIIKLKEKYRFRLLMDESNSFGVLG 290

[Close]
BLAST of CSPI06G10040 vs. TrEMBL
Match: D7TB41_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0130g00350 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 3.5e-09
Identity = 35/62 (56.45%), Postives = 47/62 (75.81%), Query Frame = 1 

Query: 9   TLDLLAVTHRRSKP--PLLAVMFLFMNSGKIAPLDEIIKLKEQYRFGVLLDESNSFGVHG 68
           TL+ + + ++R+K     + V  ++ NSG+IAPLDEII+LKE+YRF VLLDESNSFGV G
Sbjct: 231 TLEKITLENKRAKKLRRYIVVEAVYQNSGQIAPLDEIIRLKEKYRFRVLLDESNSFGVLG 290

[Close]
BLAST of CSPI06G10040 vs. TrEMBL
Match: M5XCL8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa004977mg PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.0e-08
Identity = 34/60 (56.67%), Postives = 46/60 (76.67%), Query Frame = 1 

Query: 9   TLDLLAVTHRRSKP--PLLAVMFLFMNSGKIAPLDEIIKLKEQYRFGVLLDESNSFGVHG 67
           TL+ + V ++R+K     + V  ++ NSG+IAPLDEI+KLKE+YRF V+LDESNSFGV G
Sbjct: 231 TLEKITVKNQRAKKLRRYIVVEAVYQNSGQIAPLDEIVKLKEKYRFRVVLDESNSFGVLG 290

[Close]
BLAST of CSPI06G10040 vs. TAIR10
Match: AT4G36480.1 (AT4G36480.1 long-chain base1)

HSP 1 Score: 65.5 bits (158), Expect = 1.5e-11
Identity = 33/60 (55.00%), Postives = 44/60 (73.33%), Query Frame = 1 

Query: 9   TLDLLAVTHRRSKP--PLLAVMFLFMNSGKIAPLDEIIKLKEQYRFGVLLDESNSFGVHG 67
           TL+ +   ++RSK     +    ++ NSG+IAPLDEI+KLKE+YRF V+LDESNSFGV G
Sbjct: 231 TLEKIMTKYKRSKNLRRYIVAEAVYQNSGQIAPLDEIVKLKEKYRFRVILDESNSFGVLG 290

[Close]
BLAST of CSPI06G10040 vs. NCBI nr
Match: gi|700191492|gb|KGN46696.1| (hypothetical protein Csa_6G124110 [Cucumis sativus])

HSP 1 Score: 139.8 bits (351), Expect = 1.8e-30
Identity = 67/68 (98.53%), Postives = 68/68 (100.00%), Query Frame = 1 

Query: 1  MTKPLHTQTLDLLAVTHRRSKPPLLAVMFLFMNSGKIAPLDEIIKLKEQYRFGVLLDESN 60
          MTKPLHTQTLDLLAVTHRRSKPPLLAVMFLFMNSGKIAPLDEIIK+KEQYRFGVLLDESN
Sbjct: 1  MTKPLHTQTLDLLAVTHRRSKPPLLAVMFLFMNSGKIAPLDEIIKMKEQYRFGVLLDESN 60

Query: 61 SFGVHGCT 69
          SFGVHGCT
Sbjct: 61 SFGVHGCT 68

[Close]
BLAST of CSPI06G10040 vs. NCBI nr
Match: gi|449450243|ref|XP_004142873.1| (PREDICTED: long chain base biosynthesis protein 1 [Cucumis sativus])

HSP 1 Score: 73.9 bits (180), Expect = 1.2e-10
Identity = 39/62 (62.90%), Postives = 45/62 (72.58%), Query Frame = 1 

Query: 9   TLDLLAVTHRRSKP--PLLAVMFLFMNSGKIAPLDEIIKLKEQYRFGVLLDESNSFGVHG 68
           TL+     + R+K     + V  ++ NSGKIAPLDEIIKLKEQYRF VLLDESNSFGV G
Sbjct: 231 TLEKTTAGNERAKKLRRYIVVEAVYQNSGKIAPLDEIIKLKEQYRFRVLLDESNSFGVLG 290

[Close]
BLAST of CSPI06G10040 vs. NCBI nr
Match: gi|659087713|ref|XP_008444598.1| (PREDICTED: long chain base biosynthesis protein 1 isoform X2 [Cucumis melo])

HSP 1 Score: 73.9 bits (180), Expect = 1.2e-10
Identity = 39/62 (62.90%), Postives = 45/62 (72.58%), Query Frame = 1 

Query: 9   TLDLLAVTHRRSKP--PLLAVMFLFMNSGKIAPLDEIIKLKEQYRFGVLLDESNSFGVHG 68
           TL+     + R+K     + V  ++ NSGKIAPLDEIIKLKEQYRF VLLDESNSFGV G
Sbjct: 143 TLEKTTAGNERAKKLRRYIVVEAVYQNSGKIAPLDEIIKLKEQYRFRVLLDESNSFGVLG 202

[Close]
BLAST of CSPI06G10040 vs. NCBI nr
Match: gi|659087711|ref|XP_008444597.1| (PREDICTED: long chain base biosynthesis protein 1 isoform X1 [Cucumis melo])

HSP 1 Score: 73.9 bits (180), Expect = 1.2e-10
Identity = 39/62 (62.90%), Postives = 45/62 (72.58%), Query Frame = 1 

Query: 9   TLDLLAVTHRRSKP--PLLAVMFLFMNSGKIAPLDEIIKLKEQYRFGVLLDESNSFGVHG 68
           TL+     + R+K     + V  ++ NSGKIAPLDEIIKLKEQYRF VLLDESNSFGV G
Sbjct: 231 TLEKTTAGNERAKKLRRYIVVEAVYQNSGKIAPLDEIIKLKEQYRFRVLLDESNSFGVLG 290

[Close]
BLAST of CSPI06G10040 vs. NCBI nr
Match: gi|727547502|ref|XP_010446789.1| (PREDICTED: long chain base biosynthesis protein 1-like [Camelina sativa])

HSP 1 Score: 69.3 bits (168), Expect = 2.9e-09
Identity = 34/62 (54.84%), Postives = 46/62 (74.19%), Query Frame = 1 

Query: 9   TLDLLAVTHRRSKP--PLLAVMFLFMNSGKIAPLDEIIKLKEQYRFGVLLDESNSFGVHG 68
           TL+ +   ++RSK     +    ++ NSG+IAPLDEI+KLKE+YRF V+LDESNSFGV G
Sbjct: 231 TLEKIMTKYKRSKNLRRYIVAEGVYQNSGQIAPLDEIVKLKEKYRFRVILDESNSFGVLG 290

The following BLAST results are available for this feature:
BLAST of CSPI06G10040 vs. Swiss-Prot
Match NameE-valueIdentityDescription
LCB1_ARATH2.7e-1055.00Long chain base biosynthesis protein 1 OS=Arabidopsis thaliana GN=LCB1 PE=1 SV=1[more]
LCB1A_ORYSJ1.5e-0850.00Long chain base biosynthesis protein 1a OS=Oryza sativa subsp. japonica GN=Os03g... [more]
LCB1C_ORYSJ1.5e-0861.90Long chain base biosynthesis protein 1c OS=Oryza sativa subsp. japonica GN=Os10g... [more]
LCB1B_ORYSJ1.5e-0850.00Long chain base biosynthesis protein 1b OS=Oryza sativa subsp. japonica GN=Os02g... [more]
SPTC1_DICDI8.0e-0758.97Serine palmitoyltransferase 1 OS=Dictyostelium discoideum GN=sptA PE=3 SV=1[more]
BLAST of CSPI06G10040 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KG23_CUCSA1.2e-3098.53Uncharacterized protein OS=Cucumis sativus GN=Csa_6G124110 PE=4 SV=1[more]
A0A0A0LKR2_CUCSA8.3e-1162.90Uncharacterized protein OS=Cucumis sativus GN=Csa_2G356100 PE=4 SV=1[more]
A0A0J8BH19_BETVU2.1e-0953.23Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_1g016420 PE=4 S... [more]
D7TB41_VITVI3.5e-0956.45Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0130g00350 PE=4 SV=... [more]
M5XCL8_PRUPE1.0e-0856.67Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa004977mg PE=4 SV=1[more]
BLAST of CSPI06G10040 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G36480.11.5e-1155.00 long-chain base1[more]
BLAST of CSPI06G10040 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700191492|gb|KGN46696.1|1.8e-3098.53hypothetical protein Csa_6G124110 [Cucumis sativus][more]
gi|449450243|ref|XP_004142873.1|1.2e-1062.90PREDICTED: long chain base biosynthesis protein 1 [Cucumis sativus][more]
gi|659087713|ref|XP_008444598.1|1.2e-1062.90PREDICTED: long chain base biosynthesis protein 1 isoform X2 [Cucumis melo][more]
gi|659087711|ref|XP_008444597.1|1.2e-1062.90PREDICTED: long chain base biosynthesis protein 1 isoform X1 [Cucumis melo][more]
gi|727547502|ref|XP_010446789.1|2.9e-0954.84PREDICTED: long chain base biosynthesis protein 1-like [Camelina sativa][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR015421PyrdxlP-dep_Trfase_major
IPR015424PyrdxlP-dep_Trfase
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009058 biosynthetic process
biological_process GO:0044763 single-organism cellular process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003824 catalytic activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI06G10040.1CSPI06G10040.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015421Pyridoxal phosphate-dependent transferase, major region, subdomain 1GENE3DG3DSA:3.40.640.10coord: 19..66
score: 5.1
IPR015424Pyridoxal phosphate-dependent transferaseunknownSSF53383PLP-dependent transferasescoord: 18..67
score: 2.
NoneNo IPR availablePANTHERPTHR13693CLASS II AMINOTRANSFERASE/8-AMINO-7-OXONONANOATE SYNTHASEcoord: 30..64
score: 1.2
NoneNo IPR availablePANTHERPTHR13693:SF2SERINE PALMITOYLTRANSFERASE 1coord: 30..64
score: 1.2

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI06G10040Csa6G124110Cucumber (Chinese Long) v2cpicuB314
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI06G10040Cucumber (Chinese Long) v3cpicucB364
CSPI06G10040Watermelon (97103) v2cpiwmbB455
CSPI06G10040Watermelon (97103) v2cpiwmbB459
CSPI06G10040Wax gourdcpiwgoB605
CSPI06G10040Wax gourdcpiwgoB617
CSPI06G10040Wax gourdcpiwgoB624
CSPI06G10040Cucumber (Gy14) v1cgycpiB156
CSPI06G10040Cucurbita maxima (Rimu)cmacpiB641
CSPI06G10040Cucurbita moschata (Rifu)cmocpiB561
CSPI06G10040Cucurbita moschata (Rifu)cmocpiB633
CSPI06G10040Melon (DHL92) v3.5.1cpimeB419
CSPI06G10040Melon (DHL92) v3.5.1cpimeB442
CSPI06G10040Watermelon (Charleston Gray)cpiwcgB467
CSPI06G10040Watermelon (Charleston Gray)cpiwcgB477
CSPI06G10040Watermelon (97103) v1cpiwmB538
CSPI06G10040Cucurbita pepo (Zucchini)cpecpiB289
CSPI06G10040Bottle gourd (USVL1VR-Ls)cpilsiB411
CSPI06G10040Bottle gourd (USVL1VR-Ls)cpilsiB425
CSPI06G10040Bottle gourd (USVL1VR-Ls)cpilsiB426
CSPI06G10040Melon (DHL92) v3.6.1cpimedB414
CSPI06G10040Melon (DHL92) v3.6.1cpimedB440
CSPI06G10040Cucumber (Gy14) v2cgybcpiB288
CSPI06G10040Silver-seed gourdcarcpiB0372