Csa6G113600 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa6G113600
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	ATFP4-like protein
Location	Chr6 : 7881351 .. 7882015 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGGTAGCTGCGTTGTTAAATACTATTTTAATCTATGAGTTTCTTTGTTTTCTTATCGGGAGTTTTTAAAATCTAAGTCAGAATTATCATAAGAAGAAGAAATGTTTTGCTCTTAAGATTTTGATCACACGTGATTTTTGAAATGGCACCAGCAAGAAACAAAAAAATAAAATAGACTACTTTTAACTTAGATCGTGTCTTTGCAGCAAAAGATAGTGATTCAAGTGTCCATGAAAAGGGGGCCCAAGTACCGCAGCAAAGCCTTGAAGATTGCAGCATCTGTCAAAGGTAATTAAAAACTATTGCATATATATATATATATTTATAACATAACTATAATCTATATTGATATAACTAATTAGTTTACAATGGAAATTACAGGGAGCATTGAGACAATTAGCTTGGTAGGAGACCATAAAGATAAAGTGGAGGTAGTTGGAGATTTAGATCCCATAGAACTCACTGAATTGCTAAGGAAGGGTTTCGGTTCCGCACAGTTGGAGTCAGTGAGCGCAGTTGAAGATAAAGAGAAAAAGAAAGATAAAGACGATGGCATAACATGGACATGCTCGTGGGGAGTGCCTCATCATTCATCTTATTGCTATTGCTACAACCTTCGCCCCTACCCTTCCCATTCCATATGGTGATTTATGCTTCCCACC

mRNA sequence

ATGAAGCAAAAGATAGTGATTCAAGTGTCCATGAAAAGGGGGCCCAAGTACCGCAGCAAAGCCTTGAAGATTGCAGCATCTGTCAAAGGGAGCATTGAGACAATTAGCTTGGTAGGAGACCATAAAGATAAAGTGGAGGTAGTTGGAGATTTAGATCCCATAGAACTCACTGAATTGCTAAGGAAGGGTTTCGGTTCCGCACAGTTGGAGTCAGTGAGCGCAGTTGAAGATAAAGAGAAAAAGAAAGATAAAGACGATGGCATAACATGGACATGCTCGTGGGGAGTGCCTCATCATTCATCTTATTGCTATTGCTACAACCTTCGCCCCTACCCTTCCCATTCCATATGGTGA

Coding sequence (CDS)

ATGAAGCAAAAGATAGTGATTCAAGTGTCCATGAAAAGGGGGCCCAAGTACCGCAGCAAAGCCTTGAAGATTGCAGCATCTGTCAAAGGGAGCATTGAGACAATTAGCTTGGTAGGAGACCATAAAGATAAAGTGGAGGTAGTTGGAGATTTAGATCCCATAGAACTCACTGAATTGCTAAGGAAGGGTTTCGGTTCCGCACAGTTGGAGTCAGTGAGCGCAGTTGAAGATAAAGAGAAAAAGAAAGATAAAGACGATGGCATAACATGGACATGCTCGTGGGGAGTGCCTCATCATTCATCTTATTGCTATTGCTACAACCTTCGCCCCTACCCTTCCCATTCCATATGGTGA

Protein sequence

MKQKIVIQVSMKRGPKYRSKALKIAASVKGSIETISLVGDHKDKVEVVGDLDPIELTELLRKGFGSAQLESVSAVEDKEKKKDKDDGITWTCSWGVPHHSSYCYCYNLRPYPSHSIW*

Homology

[Close]

BLAST of Csa6G113600 vs. TrEMBL
Match: A0A0A0KAU7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G113600 PE=4 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 1.0e-61
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 1


Query: 1   MKQKIVIQVSMKRGPKYRSKALKIAASVKGSIETISLVGDHKDKVEVVGDLDPIELTELL 60
           MKQKIVIQVSMKRGPKYRSKALKIAASVKGSIETISLVGDHKDKVEVVGDLDPIELTELL
Sbjct: 1   MKQKIVIQVSMKRGPKYRSKALKIAASVKGSIETISLVGDHKDKVEVVGDLDPIELTELL 60

Query: 61  RKGFGSAQLESVSAVEDKEKKKDKDDGITWTCSWGVPHHSSYCYCYNLRPYPSHSIW 118
           RKGFGSAQLESVSAVEDKEKKKDKDDGITWTCSWGVPHHSSYCYCYNLRPYPSHSIW
Sbjct: 61  RKGFGSAQLESVSAVEDKEKKKDKDDGITWTCSWGVPHHSSYCYCYNLRPYPSHSIW 117

[Close]

BLAST of Csa6G113600 vs. TrEMBL
Match: A0A059A2R2_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K01377 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 3.6e-14
Identity = 55/128 (42.97%), Postives = 77/128 (60.16%), Query Frame = 1


Query: 1   MKQKIVIQVSMK-----------RGPKYRSKALKIAASVKGSIETISLVGDHKDKVEVVG 60
           MKQK+VI VSMK           R P   SKALK+A   +G +++++LVGD +D++EV G
Sbjct: 1   MKQKVVINVSMKDHATRFFCFSPRNP--HSKALKLAGGFQG-VQSVALVGD-QDRIEVTG 60

Query: 61  DLDPIELTELLRKGFGSAQLESVSAVEDKEKKKDKD---DGITWTCSWGVPHHSSYCYCY 115
           D+D + LT LLRK  G A++ +VS +++K+KK+ KD     I W    GVPH       Y
Sbjct: 61  DVDAVNLTTLLRKKVGFAKIVTVSKLDEKDKKESKDKEAPPIVWPYIGGVPHRE---IAY 120

[Close]

BLAST of Csa6G113600 vs. TrEMBL
Match: B9SF21_RICCO (Metal ion binding protein, putative OS=Ricinus communis GN=RCOM_1213020 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 2.3e-13
Identity = 61/121 (50.41%), Postives = 74/121 (61.16%), Query Frame = 1


Query: 1   MKQKIVIQVSMKRGPKYRSKALKIAASVKGSIETISLVGDHKDKVEVVGD-LDPIELTEL 60
           MKQK+VI+VSM  G K RSKALKIA SV G +E+ SL G  K ++EVVGD +D +EL  +
Sbjct: 1   MKQKVVIRVSMN-GQKSRSKALKIAVSVSG-VESASLGGQDKSQIEVVGDGVDAVELATM 60

Query: 61  LRKGFGSAQLESVSAV-EDKEKKKD--KDDGITWTCSW-----GVPHHSSYCYCYNLRPY 113
           LRK  G A+L SVSAV E KE+KK+  KDD       W     GVP +       N  P 
Sbjct: 61  LRKNVGHAELVSVSAVGEKKEEKKEEKKDDPKVQHMVWPYYGGGVPSYGYEVKGCNQYPD 119

[Close]

BLAST of Csa6G113600 vs. TrEMBL
Match: A0A0D2QTX7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G164100 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 3.1e-13
Identity = 47/85 (55.29%), Postives = 63/85 (74.12%), Query Frame = 1


Query: 1  MKQKIVIQVSMKRGPKYRSKALKIAASVKGSIETISLVGDHKDKVEVVGD-LDPIELTEL 60
          MKQK+V++V+MK G K RSKALKI   + G +E+ SL GD K ++EV GD +D ++LT L
Sbjct: 1  MKQKMVVKVTMK-GEKSRSKALKIVVGLSG-VESASLKGDDKSQIEVTGDGVDAVKLTSL 60

Query: 61 LRKGFGSAQLESVSAVEDKEKKKDK 85
          LRKG G A+L SVSA + K+ KKD+
Sbjct: 61 LRKGVGYAELVSVSAADKKDDKKDE 83

[Close]

BLAST of Csa6G113600 vs. TrEMBL
Match: A0A164WBG7_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_021079 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 2.6e-12
Identity = 49/116 (42.24%), Postives = 73/116 (62.93%), Query Frame = 1


Query: 1   MKQKIVIQVSMKRGPKYRSKALKIAASVKGSIETISLVGDHKDKVEVVG-DLDPIELTEL 60
           MKQK+VI+V M    K R+KA+KIAA+  G +E++++ GD KDK+EV+G ++D + L +L
Sbjct: 1   MKQKVVIRVDMSDPKKSRAKAMKIAATFSG-VESVAIKGDDKDKLEVIGEEIDTVVLAKL 60

Query: 61  LRKGFGSAQLESVSAV-EDKEKKKDKDDGITWTCSWGVPHHSSYCYCYNLRPYPSH 115
           LRK  G A L S+  V +DK+ KKD+         +G  +  +Y YC    P PS+
Sbjct: 61  LRKSXGRADLVSIGPVKDDKKDKKDEVKIKPKLQGYGSNYPYNYYYC---EPVPSY 112

[Close]

BLAST of Csa6G113600 vs. TAIR10
Match: AT5G48290.1 (AT5G48290.1 Heavy metal transport/detoxification superfamily protein )

HSP 1 Score: 60.5 bits (145), Expect = 8.3e-10
Identity = 36/88 (40.91%), Postives = 55/88 (62.50%), Query Frame = 1


Query: 1  MKQKIVIQVSMKRGPKYRSKALKIAASVKGSIETISLVGDHKDKVEVVG-DLDPIELTEL 60
          MKQKI+I+V+M    K R+KA+  A   KG +  + + GDH++++EV G ++D I L ++
Sbjct: 1  MKQKILIRVTMT-DDKTRAKAMTKAVQFKG-VSAVEIKGDHRNQIEVTGVEVDMIPLIQI 60

Query: 61 LRKGFGSAQLESVSAVEDKEKKKDKDDG 88
          LRK    A+L SV+ VE  +K+ +K  G
Sbjct: 61 LRKKVAFAELVSVTKVEPPKKEDEKKGG 86

[Close]

BLAST of Csa6G113600 vs. NCBI nr
Match: gi|449444610|ref|XP_004140067.1| (PREDICTED: uncharacterized protein LOC101216311 [Cucumis sativus])

HSP 1 Score: 243.8 bits (621), Expect = 1.5e-61
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 1


Query: 1   MKQKIVIQVSMKRGPKYRSKALKIAASVKGSIETISLVGDHKDKVEVVGDLDPIELTELL 60
           MKQKIVIQVSMKRGPKYRSKALKIAASVKGSIETISLVGDHKDKVEVVGDLDPIELTELL
Sbjct: 1   MKQKIVIQVSMKRGPKYRSKALKIAASVKGSIETISLVGDHKDKVEVVGDLDPIELTELL 60

Query: 61  RKGFGSAQLESVSAVEDKEKKKDKDDGITWTCSWGVPHHSSYCYCYNLRPYPSHSIW 118
           RKGFGSAQLESVSAVEDKEKKKDKDDGITWTCSWGVPHHSSYCYCYNLRPYPSHSIW
Sbjct: 61  RKGFGSAQLESVSAVEDKEKKKDKDDGITWTCSWGVPHHSSYCYCYNLRPYPSHSIW 117

[Close]

BLAST of Csa6G113600 vs. NCBI nr
Match: gi|659094578|ref|XP_008448137.1| (PREDICTED: uncharacterized protein LOC103490424 [Cucumis melo])

HSP 1 Score: 213.4 bits (542), Expect = 2.2e-52
Identity = 105/120 (87.50%), Postives = 112/120 (93.33%), Query Frame = 1


Query: 1   MKQKIVIQVSMKRGPKYRSKALKIAASVKGSIETISLVGDHKDKVEVVGDLDPIELTELL 60
           MKQKIVI+VSMKRGPKYRSKALKIAASVKGSIETISLVGD KDKVEVVGD+DP+ELTELL
Sbjct: 1   MKQKIVIRVSMKRGPKYRSKALKIAASVKGSIETISLVGDDKDKVEVVGDIDPMELTELL 60

Query: 61  RKGFGSAQLESVSAVEDKEKKKD----KDDGITWTCSWGVPHHSSYCYCYNLRPYPSHSI 117
           RKGFGSAQLE+V+AVEDK+K KD    KD GITWTCSWGVPHHSSYCYCYNL PYPS+SI
Sbjct: 61  RKGFGSAQLETVNAVEDKDKDKDKDKNKDGGITWTCSWGVPHHSSYCYCYNLGPYPSYSI 120

[Close]

BLAST of Csa6G113600 vs. NCBI nr
Match: gi|702492055|ref|XP_010036115.1| (PREDICTED: uncharacterized protein LOC104425195 [Eucalyptus grandis])

HSP 1 Score: 85.9 bits (211), Expect = 5.2e-14
Identity = 55/128 (42.97%), Postives = 77/128 (60.16%), Query Frame = 1


Query: 1   MKQKIVIQVSMK-----------RGPKYRSKALKIAASVKGSIETISLVGDHKDKVEVVG 60
           MKQK+VI VSMK           R P   SKALK+A   +G +++++LVGD +D++EV G
Sbjct: 1   MKQKVVINVSMKDHATRFFCFSPRNP--HSKALKLAGGFQG-VQSVALVGD-QDRIEVTG 60

Query: 61  DLDPIELTELLRKGFGSAQLESVSAVEDKEKKKDKD---DGITWTCSWGVPHHSSYCYCY 115
           D+D + LT LLRK  G A++ +VS +++K+KK+ KD     I W    GVPH       Y
Sbjct: 61  DVDAVNLTTLLRKKVGFAKIVTVSKLDEKDKKESKDKEAPPIVWPYIGGVPHRE---IAY 120

[Close]

BLAST of Csa6G113600 vs. NCBI nr
Match: gi|255567218|ref|XP_002524590.1| (PREDICTED: uncharacterized protein LOC8288326 [Ricinus communis])

HSP 1 Score: 83.2 bits (204), Expect = 3.4e-13
Identity = 61/121 (50.41%), Postives = 74/121 (61.16%), Query Frame = 1


Query: 1   MKQKIVIQVSMKRGPKYRSKALKIAASVKGSIETISLVGDHKDKVEVVGD-LDPIELTEL 60
           MKQK+VI+VSM  G K RSKALKIA SV G +E+ SL G  K ++EVVGD +D +EL  +
Sbjct: 1   MKQKVVIRVSMN-GQKSRSKALKIAVSVSG-VESASLGGQDKSQIEVVGDGVDAVELATM 60

Query: 61  LRKGFGSAQLESVSAV-EDKEKKKD--KDDGITWTCSW-----GVPHHSSYCYCYNLRPY 113
           LRK  G A+L SVSAV E KE+KK+  KDD       W     GVP +       N  P 
Sbjct: 61  LRKNVGHAELVSVSAVGEKKEEKKEEKKDDPKVQHMVWPYYGGGVPSYGYEVKGCNQYPD 119

[Close]

BLAST of Csa6G113600 vs. NCBI nr
Match: gi|823189924|ref|XP_012490993.1| (PREDICTED: uncharacterized protein LOC105803388 [Gossypium raimondii])

HSP 1 Score: 82.8 bits (203), Expect = 4.4e-13
Identity = 47/85 (55.29%), Postives = 63/85 (74.12%), Query Frame = 1


Query: 1  MKQKIVIQVSMKRGPKYRSKALKIAASVKGSIETISLVGDHKDKVEVVGD-LDPIELTEL 60
          MKQK+V++V+MK G K RSKALKI   + G +E+ SL GD K ++EV GD +D ++LT L
Sbjct: 1  MKQKMVVKVTMK-GEKSRSKALKIVVGLSG-VESASLKGDDKSQIEVTGDGVDAVKLTSL 60

Query: 61 LRKGFGSAQLESVSAVEDKEKKKDK 85
          LRKG G A+L SVSA + K+ KKD+
Sbjct: 61 LRKGVGYAELVSVSAADKKDDKKDE 83

The following BLAST results are available for this feature:

BLAST of Csa6G113600 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KAU7_CUCSA	1.0e-61	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G113600 PE=4 SV=1	[more]
A0A059A2R2_EUCGR	3.6e-14	42.97	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K01377 PE=4 SV=1	[more]
B9SF21_RICCO	2.3e-13	50.41	Metal ion binding protein, putative OS=Ricinus communis GN=RCOM_1213020 PE=4 SV=...	[more]
A0A0D2QTX7_GOSRA	3.1e-13	55.29	Uncharacterized protein OS=Gossypium raimondii GN=B456_007G164100 PE=4 SV=1	[more]
A0A164WBG7_DAUCA	2.6e-12	42.24	Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_021079 PE=4 SV=1	[more]

BLAST of Csa6G113600 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G48290.1	8.3e-10	40.91	Heavy metal transport/detoxification superfamily protein	[more]

BLAST of Csa6G113600 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449444610\|ref\|XP_004140067.1\|	1.5e-61	100.00	PREDICTED: uncharacterized protein LOC101216311 [Cucumis sativus]	[more]
gi\|659094578\|ref\|XP_008448137.1\|	2.2e-52	87.50	PREDICTED: uncharacterized protein LOC103490424 [Cucumis melo]	[more]
gi\|702492055\|ref\|XP_010036115.1\|	5.2e-14	42.97	PREDICTED: uncharacterized protein LOC104425195 [Eucalyptus grandis]	[more]
gi\|255567218\|ref\|XP_002524590.1\|	3.4e-13	50.41	PREDICTED: uncharacterized protein LOC8288326 [Ricinus communis]	[more]
gi\|823189924\|ref\|XP_012490993.1\|	4.4e-13	55.29	PREDICTED: uncharacterized protein LOC105803388 [Gossypium raimondii]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0032559	adenyl ribonucleotide binding
molecular_function	GO:0043168	anion binding
molecular_function	GO:0032550	purine ribonucleoside binding
molecular_function	GO:0043531	ADP binding
molecular_function	GO:0005524	ATP binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa6G113600.1	Csa6G113600.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR22814	COPPER TRANSPORT PROTEIN ATOX1-RELATED	coord: 1..87 score: 2.9
None	No IPR available	PANTHER	PTHR22814:SF34	COPPER TRANSPORT PROTEIN-RELATED	coord: 1..87 score: 2.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa6G113600	MELO3C013462	Melon (DHL92) v3.5.1	cumeB425
Csa6G113600	ClCG02G010880	Watermelon (Charleston Gray)	cuwcgB457
Csa6G113600	Lsi10G000310	Bottle gourd (USVL1VR-Ls)	culsiB415
Csa6G113600	MELO3C013462.2	Melon (DHL92) v3.6.1	cumedB405
Csa6G113600	Cla97C02G036650	Watermelon (97103) v2	cuwmbB447
Csa6G113600	Bhi10G000992	Wax gourd	cuwgoB608
Csa6G113600	CSPI06G09380	Wild cucumber (PI 183967)	cpicuB314
Csa6G113600	Cucsa.120140	Cucumber (Gy14) v1	cgycuB155
Csa6G113600	CmaCh20G007000	Cucurbita maxima (Rimu)	cmacuB566
Csa6G113600	CmoCh20G006930	Cucurbita moschata (Rifu)	cmocuB557
Csa6G113600	Cp4.1LG16g03680	Cucurbita pepo (Zucchini)	cpecuB285
Csa6G113600	CsGy6G009470	Cucumber (Gy14) v2	cgybcuB282
Csa6G113600	Carg16119	Silver-seed gourd	carcuB0379

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa6G113600	Cucumber (Gy14) v2	cgybcuB148
Csa6G113600	Cucumber (Gy14) v2	cgybcuB321
Csa6G113600	Melon (DHL92) v3.6.1	cumedB442
Csa6G113600	Silver-seed gourd	carcuB0227
Csa6G113600	Silver-seed gourd	carcuB0378
Csa6G113600	Silver-seed gourd	carcuB1079
Csa6G113600	Watermelon (97103) v2	cuwmbB432
Csa6G113600	Wax gourd	cuwgoB561
Csa6G113600	Cucumber (Chinese Long) v2	cucuB126
Csa6G113600	Cucumber (Chinese Long) v2	cucuB171
Csa6G113600	Cucumber (Gy14) v1	cgycuB110
Csa6G113600	Cucurbita maxima (Rimu)	cmacuB141
Csa6G113600	Cucurbita maxima (Rimu)	cmacuB521
Csa6G113600	Cucurbita maxima (Rimu)	cmacuB555
Csa6G113600	Cucurbita moschata (Rifu)	cmocuB130
Csa6G113600	Cucurbita moschata (Rifu)	cmocuB513
Csa6G113600	Cucurbita moschata (Rifu)	cmocuB546
Csa6G113600	Melon (DHL92) v3.5.1	cumeB461
Csa6G113600	Watermelon (Charleston Gray)	cuwcgB443
Csa6G113600	Watermelon (97103) v1	cuwmB516
Csa6G113600	Cucurbita pepo (Zucchini)	cpecuB250
Csa6G113600	Cucurbita pepo (Zucchini)	cpecuB292
Csa6G113600	Cucurbita pepo (Zucchini)	cpecuB689
Csa6G113600	Bottle gourd (USVL1VR-Ls)	culsiB428